Alc23 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Alc23 (Alcohol consumption QTL 23) Rattus norvegicus

Symbol: Alc23
Name: Alcohol consumption QTL 23
RGD ID: 6478720
Previously known as: forced etahnol
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: ethanol drink intake rate to body weight ratio   (CMO:0001616)    
LOD Score: LRS: 10.8
P Value: 0.00509
Variance: 11.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84155,834,926 - 184,426,481RGD_MAPPER_PIPELINE
Rnor_6.04155,386,197 - 184,226,339RGD_MAPPER_PIPELINERnor6.0
Cross Type: intercross
Strains Crossed: SHR/NCrlAnra LEW/HsdUnibAnra 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. The influence of sex and estrous cycle on QTL for emotionality and ethanol consumption. Izidio GS, etal., Mamm Genome. 2011 Jun;22(5-6):329-40. Epub 2011 Apr 24.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D4Rat206)
Rat AssemblyChrPosition (strand)Source
GRCr84178,334,838 - 178,335,014 (+)Marker Load Pipeline
Rnor_6.04177,886,107 - 177,886,288NCBI
RH 3.4 Map41056.9RGD
RH 3.4 Map41056.9UniSTS
SHRSP x BN Map496.5499UniSTS
SHRSP x BN Map496.5499RGD
FHH x ACI Map4112.37RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross 6218999
qtl_general number of animals used: 97 male F2 rats 6218999
qtl_general software used:Genotype=QTX; behavioral variables=two-way ANOVA 6218999
qtl_general spans 110 cM 6218999
qtl_general measurement method:10% ethanol solution or water was available; total consumption of each solution and body weight was measured 6218999
qtl_statistics LRS: 10.8 6218999