Bw119 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bw119 (Body weight QTL 119) Rattus norvegicus

Symbol: Bw119
Name: Body weight QTL 119
RGD ID: 634319
Previously known as: Dmo7p; Niddm48; Non-insulin dependent diabetes mellitus QTL 48
Trait: abdominal fat pad mass   (VT:1000711)    
Measurement Type: abdominal fat pad weight to body weight ratio   (CMO:0000095)    
LOD Score: 5.44
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2727,828,949 - 27,829,089RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0734,147,033 - 34,147,172RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0734,212,196 - 34,212,335RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4730,339,292 - 30,339,432RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.1725,960,193 - 32,024,955RGD
Cross Type: intercross
Strains Crossed: BN OLETF 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN  (IEA)
OLETF  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of "OLETF," a rat model for non-insulin-dependent diabetes mellitus: quantitative trait locus analysis of (OLETF x BN) x OLETF. Watanabe TK, etal., Genomics 1999 Jun 15;58(3):233-9.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307764Elk3ETS transcription factor ELK372776858227831088Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
36715D7Rat3013672782894927829089Ratregion
42822D7Rat21414772782892127829070Ratregion
Position Markers

Flank 1: (D7Rat30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2727,828,949 - 27,829,089 (+)MAPPER
Rnor_6.0734,147,033 - 34,147,172NCBI
Rnor_5.0734,212,196 - 34,212,335UniSTS
RGSC_v3.4730,339,293 - 30,339,432UniSTS
RGSC_v3.4730,339,292 - 30,339,432RGD
RGSC_v3.1730,359,563 - 30,359,703RGD
Celera724,931,369 - 24,931,502UniSTS
RH 3.4 Map7190.3RGD
RH 3.4 Map7190.3UniSTS
RH 2.0 Map7182.2RGD
SHRSP x BN Map720.65RGD
FHH x ACI Map78.92RGD
Cytogenetic Map7q13UniSTS
Peak: (D7Rat30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2727,828,949 - 27,829,089 (+)MAPPER
Rnor_6.0734,147,033 - 34,147,172NCBI
Rnor_5.0734,212,196 - 34,212,335UniSTS
RGSC_v3.4730,339,293 - 30,339,432UniSTS
RGSC_v3.4730,339,292 - 30,339,432RGD
RGSC_v3.1730,359,563 - 30,359,703RGD
Celera724,931,369 - 24,931,502UniSTS
RH 3.4 Map7190.3RGD
RH 3.4 Map7190.3UniSTS
RH 2.0 Map7182.2RGD
SHRSP x BN Map720.65RGD
FHH x ACI Map78.92RGD
Cytogenetic Map7q13UniSTS
Flank 2: (D7Rat30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2727,828,949 - 27,829,089 (+)MAPPER
Rnor_6.0734,147,033 - 34,147,172NCBI
Rnor_5.0734,212,196 - 34,212,335UniSTS
RGSC_v3.4730,339,293 - 30,339,432UniSTS
RGSC_v3.4730,339,292 - 30,339,432RGD
RGSC_v3.1730,359,563 - 30,359,703RGD
Celera724,931,369 - 24,931,502UniSTS
RH 3.4 Map7190.3RGD
RH 3.4 Map7190.3UniSTS
RH 2.0 Map7182.2RGD
SHRSP x BN Map720.65RGD
FHH x ACI Map78.92RGD
Cytogenetic Map7q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Niddm48


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-21 Bw119  Body weight QTL 119  Niddm48  Non-insulin dependent diabetes mellitus QTL 48  Name updated 68913 APPROVED
2013-03-21 Bw119  Body weight QTL 119  Niddm48  Non-insulin dependent diabetes mellitus QTL 48  Symbol updated 68687 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_statistics_details QTL is also significant for abdominal fat weight (LOD = 4.86) and fasting plasma glucose level (LOD = 3.84) 619678