Bp118 QTL Report (Rattus norvegicus)

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QTL Registration

General

QTL: Bp118 (Blood pressure QTL 118) Rattus norvegicus

Symbol:

Bp118

Name:

Blood pressure QTL 118

RGD ID:

631685

Trait:

arterial blood pressure trait (VT:2000000)

Measurement Type:

systolic blood pressure (CMO:0000004)

LOD Score:

3.2

P Value:

Not Available

Variance:

Not Available

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	24,655,225 - 69,655,225	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	3	31,324,797 - 76,324,797	RGD	Rnor5.0
RGSC_v3.4	3	20,229,699 - 65,229,699	RGD	RGSC3.4
RGSC_v3.1	3	20,126,018 - 65,126,018	RGD

Cross Type:

Not Available

Strains Crossed:

WKY/Izm SHRSP/A3Izm

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypertension (IDA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased systemic arterial blood pressure (IAGP)

Experimental Data Annotations Click to see Annotation Detail View

Clinical Measurement

systolic blood pressure (IDA)

Experimental Condition

controlled sodium content diet (IDA)

Measurement Method

tail cuff plethysmography (IDA)

Vertebrate Trait

arterial blood pressure trait (IDA)

Rat Strain

SHRSP/A3Izm (IEA)

WKY/Izm (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Genome-wide searches for blood pressure quantitative trait loci in the stroke-prone spontaneously hypertensive rat of a Japanese colony.	Kato N, etal., J Hypertens 2003 Feb;21(2):295-303.

Region

Markers in Region

The following Markers overlap with this region.

RGD ID

Symbol

Expected Size

Chr

Start

Stop

Species

Match

Position Markers

Peak: (D3Rat110)

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	47,155,167 - 47,155,284	NCBI
Rnor_5.0	3	53,824,739 - 53,824,856	UniSTS
RGSC_v3.4	3	42,729,639 - 42,729,760	RGD
RGSC_v3.4	3	42,729,640 - 42,729,760	UniSTS
RGSC_v3.1	3	42,625,818 - 42,626,218	RGD
SHRSP x BN Map	3	32.8199	UniSTS
SHRSP x BN Map	3	32.8199	RGD

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Bp118

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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QTL: Bp118 (Blood pressure QTL 118) Rattus norvegicus

Mammalian Phenotype