Scl9 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl9 (Serum cholesterol level QTL 9) Rattus norvegicus

Symbol: Scl9
Name: Serum cholesterol level QTL 9
RGD ID: 631517
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21615,726,433 - 21,034,895RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01617,309,396 - 22,744,540RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01617,191,679 - 22,636,409RGDRnor5.0
RGSC_v3.41616,194,598 - 22,671,959RGDRGSC3.4
RGSC_v3.11616,194,596 - 22,671,957RGD
Cross Type: Not Available
Strains Crossed: BC/CpbU LEW/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Measurement Method

Vertebrate Trait

Rat Strain
BC/CpbU  (IEA)
LEW/OlaHsd  (IEA)

References

References - curated
1. Bonne AC, etal., Arterioscler Thromb Vasc Biol 2002 Dec 1;22(12):2072-9.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3050Mat1amethionine adenosyltransferase 1A161698308417001284Rat
619941Ncanneurocan161930196919328436Rat
3693Slc18a1solute carrier family 18 member A1162065326820687051Rat
619971Plvapplasmalemma vesicle associated protein161818498518197301Rat
3899Tpm4tropomyosin 4161768441517698456Rat
3528Rab3aRAB3A, member RAS oncogene family161868418518688297Rat
2945JundJunD proto-oncogene, AP-1 transcription factor subunit161873412118735799Rat
3665Sftpa1surfactant protein A1161700818017011686Rat
3667Sftpdsurfactant protein D161704649117058968Rat
620284Atp6v1b2ATPase H+ transporting V1 subunit B2162061751520641651Rat
620117Insl3insulin-like 3161839868218400566Rat
727849Bst2bone marrow stromal cell antigen 2161821740418220979Rat
68344Uba52ubiquitin A-52 residue ribosomal protein fusion product 1161891861418920807Rat
619722Unc13aunc-13 homolog A161833622918381811Rat
628698Zfp709zinc finger protein 709161790759917920047Rat
621165Mk1Mk1 protein161878081918783308Rat
3017Lpllipoprotein lipase162083005520853855Rat
3055Mbl1mannose binding lectin 1161702914617035187Rat
3146Myo9bmyosin IXb161794537918030114Rat
2962Kcnn1potassium calcium-activated channel subfamily N member 1161857485818597780Rat
620706Homer3homer scaffold protein 3161913217719142739Rat
621144Rab8aRAB8A, member RAS oncogene family161765402717675385Rat
621685Nr2f6nuclear receptor subfamily 2, group F, member 6161804601218053914Rat
1304678Gdf1growth differentiation factor 1161909730919112519Rat
1303133Pgpep1pyroglutamyl-peptidase I161877056318782968Rat
708565Lzts1leucine zipper tumor suppressor 1162054275620598204Rat
2674Gdf15growth differentiation factor 15161880531218807893Rat
620872F2rl3F2R like thrombin or trypsin receptor 3161711744117119434Rat
1302976Rpl18aribosomal protein L18A161854257218544578Rat
1306808Lsm4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated161875548118761106Rat
735220Mvb12amultivesicular body subunit 12A161825222718257111Rat
69267Slc5a5solute carrier family 5 member 5161854670918556698Rat
620025Il12rb1interleukin 12 receptor subunit beta 1161862022818633207Rat
620927Slc27a1solute carrier family 27 member 1161827898418300173Rat
1305151B3gnt3UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3161840140518410821Rat
1304711Ints10integrator complex subunit 10162091522320947146Rat
1305557Tmem59ltransmembrane protein 59-like161894137018945381Rat
1305693Abhd8abhydrolase domain containing 8161814446418151201Rat
1305100Pbx4PBX homeobox 4161955508919590054Rat
2940Jak3Janus kinase 3161838633018398542Rat
1306042Sugp2SURP and G patch domain containing 2161915995119191412Rat
68341Pik3r2phosphoinositide-3-kinase regulatory subunit 2161866551718674067Rat
1307001Pgls6-phosphogluconolactonase161830031718305803Rat
1305714Tspan14tetraspanin 14161678424216841368Rat
1307683Fcho1FCH and mu domain containing endocytic adaptor 1161841345218430795Rat
1305367Gtpbp3GTP binding protein 3161817576618180857Rat
1306660Use1unconventional SNARE in the ER 1161803828418041826Rat
727918Pde4cphosphodiesterase 4C161869072718711555Rat
1306691Armc6armadillo repeat containing 6161919110619201528Rat
1307618Csgalnact1chondroitin sulfate N-acetylgalactosaminyltransferase 1162099521021330586Rat
1306033Atp13a1ATPase 13A1161961515619631546Rat
1306785CopeCOPI coat complex subunit epsilon161911487119125527Rat
1305261Cyp4f18cytochrome P450, family 4, subfamily f, polypeptide 18161776354317804944Rat
2378Compcartilage oligomeric matrix protein161904720619055584Rat
1308408Hapln4hyaluronan and proteoglycan link protein 4161933310619341243Rat
1359397Mrpl34mitochondrial ribosomal protein L34161815247018153205Rat
1310758Ifi30IFI30, lysosomal thiol reductase161867565118679857Rat
1311591Sh2d4bSH2 domain containing 4B161667351816783076Rat
1310859Ushbp1USH1 protein network component harmonin binding protein 1161805732118067933Rat
1334022Olr1648-psolfactory receptor pseudogene 1648161772988417730788Rat
1310931Ccdc124coiled-coil domain containing 124161856674518572564Rat
1311565Haus8HAUS augmin-like complex, subunit 8161793081917945254Rat
1312034Klhl26kelch-like family member 26161895212318977328Rat
1309002Colgalt1collagen beta(1-O)galactosyltransferase 1161831979618332106Rat
1308670Fkbp8FKBP prolyl isomerase 8161889560818902648Rat
1308184Ankle1ankyrin repeat and LEM domain containing 1161807641318082356Rat
1308296Nxnl1nucleoredoxin-like 1161827060418279797Rat
1305974Cers1ceramide synthase 1161909730919112519Rat
1308759Mau2MAU2 sister chromatid cohesion factor161938384719414996Rat
1311371Crlf1cytokine receptor-like factor 1161892472218936049Rat
1308266Map1smicrotubule-associated protein 1S161851675918527777Rat
1309676Prxl2aperoxiredoxin like 2A161686660116886378Rat
1309243Calr3calreticulin 3161739606417423166Rat
1307703Tmem161atransmembrane protein 161A161923763819248151Rat
1307653Ap1m1adaptor related protein complex 1 subunit mu 1161758688617602410Rat
1311390Rfxankregulatory factor X-associated ankyrin-containing protein161928085719288886Rat
1308064Mpv17l2MPV17 mitochondrial inner membrane protein like 2161868010618684212Rat
1309659Arrdc2arrestin domain containing 2161860189718606029Rat
1305279Cherpcalcium homeostasis endoplasmic reticulum protein161736745517380507Rat
1307901Tmem38atransmembrane protein 38a161725816017274204Rat
1310596Gatad2aGATA zinc finger domain containing 2A161942957819520320Rat
1309524Med26mediator complex subunit 26161729972217350168Rat
1562866Kxd1KxDL motif containing 1161889534318916266Rat
1564941RGD1564941similar to ankyrin repeat domain 26162035831520422344Rat
1563748PotemPOTE ankyrin domain family member M162019364620311924Rat
1563946Ano8anoctamin 8161816385318173248Rat
1559764Tssk6testis-specific serine kinase 6161952362619526074Rat
1566103Niban3niban apoptosis regulator 3161830712218318589Rat
1565708Eps15l1epidermal growth factor receptor pathway substrate 15-like 1161742634517501677Rat
1563236Yjefn3YjeF N-terminal domain containing 3161953374219539759Rat
1359619Ssbp4single stranded DNA binding protein 4161882801418838941Rat
1310496Sugp1SURP and G patch domain containing 1161935265919383533Rat
1359299Zfp868zinc finger protein 868161976263419777148Rat
1359516Babam1BRISC and BRCA1 A complex member 1161806883018074938Rat
1359220Klf2Kruppel-like factor 2161752177317523723Rat
1564818Lrrc25leucine rich repeat containing 25161880688818813726Rat
1311121Ellelongation factor for RNA polymerase II161884502518891484Rat
1311124Ddx49DEAD-box helicase 49161912538819133042Rat
1561190Nr2c2apnuclear receptor 2C2-associated protein161928845419290940Rat
1359423Isyna1inositol-3-phosphate synthase 1161883914318841979Rat
1311157Cilp2cartilage intermediate layer protein 2161953975519547191Rat
1311847RGD1311847similar to 1700030K09Rik protein161737999917396088Rat
1566239Rex1bdrequired for excision 1-B domain containing161892152418924526Rat
1565495RGD1565495similar to retinoblastoma binding protein 7161807986118084413Rat
1587639Mast3microtubule associated serine/threonine kinase 3161863676418663852Rat
1565407Ocel1occludin/ELL domain containing 1161804203718045080Rat
1561342Slc35e1solute carrier family 35, member E1161735093817364185Rat
1559708RGD1559708similar to ribosomal protein S10162070306020703551Rat
1565577GmipGem-interacting protein161960072319614459Rat
1561733Mef2bmyocyte enhancer factor 2B161925300819269514Rat
1584153Dda1DET1 and DDB1 associated 1161815631018163938Rat
1582941Borcs8BLOC-1 related complex subunit 8161927430519280969Rat
1561287Fam32afamily with sequence similarity 32, member A161760305417607376Rat
1561336Lpar2lysophosphatidic acid receptor 2161959206719600850Rat
1587989Sin3bSIN3 transcription regulator family member B161712327717160070Rat
1589127Upf1UPF1, RNA helicase and ATPase161907659419097365Rat
1585926LOC679663similar to transcription elongation factor B (SIII), polypeptide 1162025719620258065Rat
1590245Cib3calcium and integrin binding family member 3161762250117631754Rat
1588820LOC688468similar to phafin 2161702563917026445Rat
1589158Crtc1CREB regulated transcription coactivator 1161898819719046913Rat
1588855Dydc1DPY30 domain containing 1161694094616961462Rat
1588866Dydc2DPY30 domain containing 2161692817216941950Rat
1588793Smim7small integral membrane protein 7161727441717278336Rat
1589951LOC689627similar to Sp2 transcription factor161978173219806010Rat
1586623LOC686073similar to Adenylyl cyclase-associated protein 1 (CAP 1)161617881116194629Rat
1597457Tm6sf2transmembrane 6 superfamily member 2161934421819351431Rat
1592346Slc25a42solute carrier family 25, member 42161921391419251990Rat
1592047LOC364528similar to PRP31 pre-mRNA processing factor 31 homolog161650758616509019Rat
1592048LOC364527similar to Mitochondrial carrier protein CGI-69161626020016261170Rat
2319713Zfp617zinc finger protein 617161781622117836129Rat
2319149Tmem221transmembrane protein 221161825362218271094Rat
2318713Zfp964zinc finger protein 964161972176519736148Rat
2318899Zfp866zinc finger protein 866161965396619675968Rat
2320746Zfp869zinc finger protein 869161968988119701201Rat
2320904LOC100361056transmembrane protein 60-like161918331819184586Rat
2323172LOC100363371hypothetical LOC100363371161601072116018027Rat
2323222LOC100363321serologically defined colon cancer antigen 3161601813716020197Rat
2321939Hsh2dhematopoietic SH2 domain containing161763051917649932Rat
2321209Nwd1NACHT and WD repeat domain containing 1161716647917242055Rat
6493549LOC100911353uncharacterized LOC100911353162008311920178026Rat
6492821Ndufa13NADH:ubiquinone oxidoreductase subunit A13161952663319533567Rat
7612972LOC102548312uncharacterized LOC102548312161705910817066763Rat
7638512LOC102552223uncharacterized LOC102552223161991816219987122Rat
7610272LOC102546921uncharacterized LOC102546921161643414616489469Rat
7600751LOC102548917zinc finger protein 844-like161785686017887122Rat
7561800LOC102554171uncharacterized LOC102554171162060307820617507Rat
7549926IqcnIQ motif containing N161871651918733971Rat
7583975LOC102549994uncharacterized LOC102549994161900109519005079Rat
7684901LOC102551257zinc finger protein 709-like161981138319856479Rat
7720136LOC102556133uncharacterized LOC102556133161565976115746831Rat
7728571LOC102548752uncharacterized LOC102548752161783616317850647Rat
9177833LOC103693912uncharacterized LOC103693912161637194316377347Rat
9252289LOC103693914uncharacterized LOC103693914161736573317379714Rat
9461660LOC103693918uncharacterized LOC103693918162024551820297490Rat
9394835LOC103691104uncharacterized LOC103691104162004864820078643Rat
11356238LOC108348385uncharacterized LOC108348385161770609717745251Rat
11448898LOC108353113ubiquitin-conjugating enzyme E2 variant 2 pseudogene161701254117021287Rat
11475248LOC108348437glyceraldehyde-3-phosphate dehydrogenase pseudogene161823240518233393Rat
11447442LOC108348389uncharacterized LOC108348389161840993518414157Rat
11429468LOC108348302zinc finger protein 709-like161964358719654567Rat
11416049LOC108348384uncharacterized LOC108348384161728229417295441Rat
11419074LOC108348388uncharacterized LOC108348388161842343918431924Rat
11373735Ccdc194coiled-coil domain containing 194161820509918209310Rat
41169148LOC120097580small nucleolar RNA SNORA16B/SNORA16A family161975912219759293Rat
41324383LOC120097437uncharacterized LOC120097437161722994717231890Rat
41208562LOC120097646U6 spliceosomal RNA161918492119185027Rat
41388827LOC120097370uncharacterized LOC120097370161952673319530918Rat
41120676LOC120097379uncharacterized LOC120097379161869372318696384Rat
41392720LOC120097384uncharacterized LOC120097384162059741720609754Rat
41344393LOC120097429uncharacterized LOC120097429161754427317546652Rat
41345558LOC120097445SIN3-HDAC complex-associated factor-like161595514915957579Rat
41269694LOC120097368uncharacterized LOC120097368161882391418826522Rat
41070138LOC12009752360S ribosomal protein L10-like162094081420943055Rat
41102896LOC120097475elongin-C-like162000322920003906Rat
41160059LOC120097375uncharacterized LOC120097375161830225118303041Rat
41220168LOC120097436HAUS augmin-like complex subunit 8161710413417112475Rat
41373121LOC120093089putative protein TPRXL161871170218716003Rat
41229631LOC120097596U1 spliceosomal RNA161589107415891234Rat
41271104LOC120097497cactin-like161848816918491349Rat
41234213LOC120097581small nucleolar RNA SNORA68161854407118544199Rat
40947784LOC120097636U4 spliceosomal RNA161964824719648409Rat
40973030NEWGENE_40934091transfer RNA alanine (anticodon AGC)161698496416985044Rat
40952874LOC120097476uncharacterized LOC120097476162010987920128723Rat
40960270LOC120097450uncharacterized LOC120097450161729634717299456Rat
40937621LOC120097514uncharacterized LOC120097514162094725620969103Rat
41008728NEWGENE_40934091transfer RNA alanine (anticodon AGC)161823080518230879Rat
41008933LOC120097391uncharacterized LOC120097391161580844315890086Rat
40995696LOC120097415uncharacterized LOC120097415162088125020897122Rat
41048869LOC120097376uncharacterized LOC120097376161830186218306472Rat
41077788LOC120097674small nucleolar RNA SNORA70162079013720790270Rat
41053970LOC120097658U6 spliceosomal RNA161633148816331594Rat
41152257LOC120097624small nucleolar RNA SNORA17161929880619298940Rat
41032549LOC120097369uncharacterized LOC120097369161906795819076416Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10829D16Got22296161873663118736930Ratregion
10885D16Wox9145161703387617034023Ratregion
34654D6Mit11244161703386917034109Ratregion
11286D16Mgh2149161700757617007744Ratregion
11446D16Mgh4150161769679117696911Ratregion
11447D16Wox10113161769677717696890Ratregion
11448D16Wox11192161769678517696947Ratregion
35214D16Rat10137161859986618600001Ratregion
35527D16Rat7164161900443519004606Ratregion
37854D16Rat30177161603965916039848Ratregion
36484D16Rat9160162087224320872425Ratregion
34797D16Rat8156162081798420818140Ratregion
35005D16Rat6130162103489521035003Ratregion
38370D16Rat44205161572624415726433Ratregion
38438D16Rat47231162059159120591821Ratregion
38834D16Rat35281161588423915884486Ratregion
42022D16Arb5295161703378317034077Ratregion
42030D16Arb9210161769003917690257Ratregion
42810D6Rat183143161753527617535412Ratregion
43067D16Rat105174161942327619423446Ratregion
40868D16Rat78132161918215819182264Ratregion
41062D16Rat77181162056833520568727Ratregion
41062D16Rat77181162056833520568510Ratregion
41618D16Rat82172161839233818392522Ratregion
60124D16Got17256161814301318143270Ratregion
45325D16Got19175161765314217653317Ratregion
45327D16Got18216161924820219248422Ratregion
45328D16Got20171161765313317653304Ratregion
45330D16Got24254162099316120993415Ratregion
629609D16Kyo1151161899719718997413Ratregion
67249D16Arb10106161769678017696886Ratregion
1632761D16Cebr3170161748239917482570Ratregion
1640647D16Wox18293161855580218556095Ratregion
1634482D16Wox24182161705897517059157Ratregion
1634593D16Got102144161730558617305730Ratregion
5036005PMC83998P1387161854417118544558Ratregion
5038762RH127318204161828867918288883Ratregion
5039220RH127581207161700099617001203Ratregion
5038998RH127454211161923662319236834Ratregion
5036573AU048473163162029665720296822Ratregion
5033951RH140737202161758693617587138Ratregion
5034179RH141667189161876140718761596Ratregion
5034223RH141832202161913222219132424Ratregion
5034243RH141905213161784402117844237Ratregion
5026372RH131952205161760401617604221Ratregion
5029049RH143324207161769761517697822Ratregion
5034470BE118794159161677209616772255Ratregion
5026538RH132594180161833081718330997Ratregion
5026556RH132663199161960075319600952Ratregion
5026708RH133230206161876097818761184Ratregion
5034768AI011016169161790906017909229Ratregion
5034770AI230664202161744480417444993Ratregion
5026890RH133923188161821746118217649Ratregion
5032285AI414941102161734850417348606Ratregion
5026998RH134334218161821666718216885Ratregion
5029725BE102087171161903166819031839Ratregion
5035492AI406750199161927541719275616Ratregion
5034840AI013356181161927295819273139Ratregion
5032773RH135246192161729166117291853Ratregion
5032773RH135246192161729166117291853Ratregion
5035260AI071469208161904667719046885Ratregion
5032873RH136800244161933356319333807Ratregion
5032947RH137062151161952015619520307Ratregion
5032973RH137162232161824804218248273Ratregion
5025046RH126832239161951838219518621Ratregion
5027601AW554706127161650899116509118Ratregion
5027639AI573415136161704666817046804Ratregion
5030245BE099440157161830088018301038Ratregion
5030303BF396714164161833361118333775Ratregion
5033081RH137522209161977183119772040Ratregion
5027775RH94693178161802979718029975Ratregion
5025448RH128354182161889567118895853Ratregion
5033353RH138520137161898361118983748Ratregion
5028287D8Mit133120161711737017117490Ratregion
5025920RH1302060161706656517066753Ratregion
5031153BF41304997161972306919723166Ratregion
5052041RH94806297162083088520831182Ratregion
5054371RH143185228161854008718540315Ratregion
5052161RH94874128161703495917035087Ratregion
5055205RH143667250161959325419593504Ratregion
5054431RH143220110161970416119704271Ratregion
5059440AW530829164161935272419353048Ratregion
5057544BE095517197161927626819276465Ratregion
5057672BF392548228161985622819856456Ratregion
5055025RH143562153161897613918976292Ratregion
5058724BE102387155161717072117170876Ratregion
5056549RH144442170161900352319003693Ratregion
5052478AI413414153161904653419046687Ratregion
5058140BF386683157161902726419027421Ratregion
5058942BF387284154161717424917174403Ratregion
5058226BF386847150161735774317357893Ratregion
5058284BF386951159161717469117174850Ratregion
5049990RH133798160161868425618684416Ratregion
5058430BE096021217161873597518736194Ratregion
5053457RH142660122161749486617494988Ratregion
5049862RH133725206161851773118517937Ratregion
5052476AI385651100161909735019097450Ratregion
5051449AI79036290162061827220618362Ratregion
5050492RH134087186161729825417298440Ratregion
5041622RH128963151161862023518620386Ratregion
5041656RH128982156161892477518924931Ratregion
5040824RH128504188161737974917379937Ratregion
5043270RH129930211161878262018782831Ratregion
5044260RH130501181161977645619776637Ratregion
5044672RH130738206161868392118684127Ratregion
5045218RH131052211161977820419778415Ratregion
5045476RH131200180161970101919701199Ratregion
5044912RH130875189161883867718838866Ratregion
5046474RH131774197161894729218947489Ratregion
5046484RH1317800161818044118180745Ratregion
5046484RH1317800161818038718180745Ratregion
5047506RH132367193161793087317931066Ratregion
5047610RH132426190161804612818046318Ratregion
5045884RH131434208161830417518304712Ratregion
5049304RH133404200161816363318163833Ratregion
5046614RH131855181161826226518262446Ratregion
5046710RH131910197161736577017365967Ratregion
5047890RH132588211161941162919411840Ratregion
5049102RH133287198161678352916783746Ratregion
5049162RH133321213161894507318945286Ratregion
5046922RH1320320161928038119280566Ratregion
5047016RH132086181161692825116928431Ratregion
5048236RH132786195162091882820919023Ratregion
5048282RH132813204161830283818303042Ratregion
5039350RH127655197161815293918153136Ratregion
5047266RH132229189161725816617258355Ratregion
5047400RH132305217161866345218663669Ratregion
5048428RH132898208161941471119414919Ratregion
5042330RH129372210161918332719183537Ratregion
5042396RH129410206161875548218755688Ratregion
5042416RH129421166161883916018839326Ratregion
5049582RH133564182161785037817850560Ratregion
5040086RH128081197161920578319205980Ratregion
5040156RH128121212161891594818916160Ratregion
5042824RH129667196161911488419115157Ratregion
5042946RH129739180162059796620598146Ratregion
5041394RH128832220161916241119162631Ratregion
5041516RH1289010161913946919139900Ratregion
5075658RH138721120161952760819527728Ratregion
5076306RH139099148161909734819097496Ratregion
5076390RH139147129161854010318540232Ratregion
5072598RH136942158161736300517363163Ratregion
5072644RH136969191161701143417011625Ratregion
5076834RH139405128161860586418605992Ratregion
5075424RH138586162161734907817349240Ratregion
5075942RH138886139161940934819409487Ratregion
5079418RH140984201161825685218257053Ratregion
5079422RH140987187161928861219288799Ratregion
5076846RH139412203161954697119547174Ratregion
5077460RH139769206161818502918185235Ratregion
5077984RH140074205161768357917683784Ratregion
5080176RH141429220161704587217046092Ratregion
5079074RH140720209161805040818050617Ratregion
5072888RH137112180161712333517123515Ratregion
5078620RH140449187161929103519291222Ratregion
5071324RH135016185161807307818074660Ratregion
5073620RH137541182161913946919139651Ratregion
5070760RH134688183161923852119238704Ratregion
5071226RH134960183161727566717275850Ratregion
5073230RH137315206161961518119615387Ratregion
5073308RH137361202161959222719592429Ratregion
5071368RH135041201161826926518270574Ratregion
5071844RH135317180161933495019335130Ratregion
5065058BF405600179161726237717262556Ratregion
5069969RH94391161162068687020687031Ratregion
5068872AU046874189162031405720314228Ratregion
5068872AU046874189162031405720314228Ratregion
5070163RH94509106161704649217046598Ratregion
5069550AU046421209161730550817305717Ratregion
5069628AU046373234162063887220639106Ratregion
5070223RH94543181162083016920830349Ratregion
5060206BI279710181162061789720618078Ratregion
5061990BF397087173161859836418598538Ratregion
5063738BF404944182161986276819862950Ratregion
5060488BE110209155161972343719723592Ratregion
5060686BI286434172161686666616866835Ratregion
5064424BI302176215161998649019986705Ratregion
5060166AI713000190161738023517380425Ratregion
5060366AW531806156161736394417364100Ratregion
5062160BE106290179161955443119554610Ratregion
5063948AW529290185161940972219409907Ratregion
5062986BI289113216161703495917035174Ratregion
5061296BI293622121161885004118850162Ratregion
5063142BI301350200162050431720504517Ratregion
5063142BI301350200162048356520483765Ratregion
5063142BI301350200162046283120463031Ratregion
5064692BF399577128161842992318430051Ratregion
5084092AI232612145161878206418782877Ratregion
5084130AI408449230161941598219416212Ratregion
5087036AW521715163161684223816842401Ratregion
5087816D8Bwg1484e154161815301818153172Ratregion
5087970Jund1186161873413818734324Ratregion
5083163BI281824150161940934519409495Ratregion
5083403BF391070182161988260719882789Ratregion
5088481AU048595190162029666120296843Ratregion
5090427AU049744166162034470020344872Ratregion
5090427AU049744166162034470020344872Ratregion
5090427AU049744166162013457420134742Ratregion
5084334AI169383128161866457618664704Ratregion
5080912RH141855191161913330719133498Ratregion
5085145BE096312219161837021218370431Ratregion
5082533BF416213114161835902518359139Ratregion
5081078RH141952187161859741718597604Ratregion
5085016AI179879186161912976819130421Ratregion
5085034AI23760791161801538318015474Ratregion
5086799BM387488179161806119018061369Ratregion
5502597RH125499230161854370518544026Ratregion
5502794LSM4137161875616118756298Ratregion
5503128MAT1A0161699880216999578Ratregion
5507592Atp6b1121162062707220627703Ratregion
5503408TM466161769048217690548Ratregion
5504159UniSTS:2593750161802877418029392Ratregion
5504161UniSTS:2593780161802761918028436Ratregion
5504153Rent10161908491019085883Ratregion
5505081Sftpd348161705132317051671Ratregion
5505400Jund0161873438218735350Ratregion
5505953UniSTS:496654112161880519618805308Ratregion
5506078UniSTS:4983030161884032418840607Ratregion
5506743G44990250161793781417938066Ratregion
5507213UniSTS:225314189161758717117587360Ratregion
5499627MARC_4117-4118:991938388:1111161854374818543950Ratregion
5501093PMC134025P2493161959832019598813Ratregion
5500456AA55556448161891943818919486Ratregion
5499977UniSTS:235923371161817948418179855Ratregion
5499981UniSTS:235912305161977625319776558Ratregion
5500394GDB:4340120161769082917690976Ratregion
5503865D14S105E84161854429218544468Ratregion
5501359RH69933505161870267018703175Ratregion
5501089PMC134025P1311161959832019598631Ratregion
5501095PMC134025P3250161959856319598813Ratregion
5502307RH124339154162000356120003715Ratregion
5502651RH126344196161891605518916251Ratregion
5502487RH125067120161815296818153088Ratregion
Position Markers

Flank 1: (D16Rat6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21621,034,895 - 21,035,003 (+)MAPPER
Rnor_6.01622,744,540 - 22,744,647NCBI
Rnor_5.01622,636,409 - 22,636,516UniSTS
RGSC_v3.41622,671,959 - 22,672,067RGD
RGSC_v3.41622,671,960 - 22,672,067UniSTS
RGSC_v3.11622,671,957 - 22,672,065RGD
Celera1621,194,541 - 21,194,648UniSTS
RH 2.0 Map16290.3RGD
SHRSP x BN Map169.04RGD
Flank 2: (D16Rat44)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21615,726,244 - 15,726,433 (+)MAPPER
Rnor_6.01617,309,208 - 17,309,396NCBI
Rnor_5.01617,191,491 - 17,191,679UniSTS
RGSC_v3.41616,194,410 - 16,194,598UniSTS
RGSC_v3.41616,194,409 - 16,194,598RGD
RGSC_v3.11616,194,408 - 16,194,596RGD
Celera1615,954,139 - 15,954,327UniSTS
RH 3.4 Map16140.0RGD
RH 3.4 Map16140.0UniSTS
RH 2.0 Map16106.2RGD
SHRSP x BN Map165.64RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl9

RGD Curation Notes
Note Type Note Reference