Aia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Aia2 (Adjuvant induced arthritis QTL 2) Rattus norvegicus

Symbol: Aia2
Name: Adjuvant induced arthritis QTL 2
RGD ID: 61475
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 5.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2439,505,275 - 73,892,441RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0437,685,175 - 73,066,691RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0437,534,124 - 72,703,184RGDRnor5.0
RGSC_v3.4436,592,628 - 73,972,591RGDRGSC3.4
RGSC_v3.1436,711,168 - 74,248,721RGD
Cross Type: F2
Strains Crossed: DA F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
F344/NRrrc  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Mapping and functional characterization of rat chromosome 4 regions that regulate arthritis models and phenotypes in congenic strains. Backdahl L, etal., Arthritis Rheum 2003 Feb;48(2):551-9.
2. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3. Localization of quantitative trait loci regulating adjuvant-induced arthritis in rats: evidence for genetic factors common to multiple autoimmune diseases. Kawahito Y, etal., J Immunol 1998 Oct 15;161(8):4411-9
4. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
5. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Eau1 interacts with RGD:61035
Pia2 maps to same region RGD:61035
Iddm4 interacts with RGD:61035


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
1584730Stmnl-ps2stathmin like, pseudogene 243976968439770132Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44000221640009384Rat
1563764Phf14PHD finger protein 1444000969140195877Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044068219240683121Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944115613841277227Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144154887241549774Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144187003941878699Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
2322826Smim30l1small integral membrane protein 30 like 144214169642143340Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144223615742358953Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344246088042461983Rat
41017590Rnu6-210RNA, U6 small nuclear 21044272163142721733Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1559697Foxp2forkhead box P244313382743712442Rat
1585845Rbmxl1bRbmx like 1B44395627543957957Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
1562178Ak2-ps3adenylate kinase 2, pseudogene 344496660644967403Rat
3846Tfectranscription factor EC44510612945180236Rat
41270777LOC120102238uncharacterized LOC12010223844525441545365272Rat
1566346Testestin LIM domain protein44536530445403829Rat
7512277LOC102550644uncharacterized LOC10255064444546330045616095Rat
620348Cav2caveolin 244561676645624144Rat
2280Cav1caveolin 144564062445673708Rat
9112364LOC103692063uncharacterized LOC10369206344568273545711751Rat
7671121LOC102550745uncharacterized LOC10255074544571182445736550Rat
3082MetMET proto-oncogene, receptor tyrosine kinase44579045645898139Rat
1549770Capza2capping actin protein of muscle Z-line subunit alpha 244597814246014032Rat
1303148ST7suppression of tumorigenicity 744604165546289745Rat
41017039LOC12010244460S ribosomal protein L23a-like44614691746153007Rat
621346Wnt2Wnt family member 244632840846374673Rat
621579Asz1ankyrin repeat, SAM and basic leucine zipper domain containing 144640048546456085Rat
2332CftrCF transmembrane conductance regulator44656126946728759Rat
41373703LOC120102563U6 spliceosomal RNA44675272146752827Rat
628691Cttnbp2cortactin binding protein 244680097546964681Rat
41325296LOC120102241uncharacterized LOC12010224144690628746931844Rat
1566227U2surp-ps1U2 snRNP-associated SURP domain containing, pseudogene 144700588447008963Rat
1308442Lsm8LSM8 homolog, U6 small nuclear RNA associated44730625947312125Rat
1564660Ankrd7ankyrin repeat domain 744731227047336754Rat
1597712Pdia6l1protein disulfide isomerase family A, member 6 like 144760658247607800Rat
11453204LOC108350673uncharacterized LOC10835067344874646548832870Rat
1588440Rpl7al1ribosomal protein L7A like 144899400148996804Rat
41283447LOC120102623small nucleolar RNA SNORA7244956519549565318Rat
2321181Nid2-ps1nidogen 2, pseudogene 144963262849633166Rat
7531073Kcnd2l1potassium voltage-gated channel subfamily D member 2 like 144977514649777251Rat
68393Kcnd2potassium voltage-gated channel subfamily D member 244977581250277746Rat
9383752LOC10369208160S ribosomal protein L3 pseudogene44999112250003764Rat
9374544Sdad1-ps1SDA1 domain containing 1, pseudogene 145000501450017758Rat
1311102Tspan12tetraspanin 1245031376850389246Rat
1310556Ing3inhibitor of growth family, member 345047795450505168Rat
1563491Cped1cadherin-like and PC-esterase domain containing 145051671250789651Rat
1562253Wnt16Wnt family member 1645082096850831380Rat
735193Fam3cFAM3 metabolism regulating signaling molecule C45083992950887276Rat
40966555Rps2-ps30ribosomal protein S2, pseudogene 3045118082051181483Rat
2323280Ddx50-ps1DExD-box helicase 50, pseudogene 145122310151296237Rat
3455Ptprz1protein tyrosine phosphatase, receptor type Z145139731651595220Rat
1310811Aassaminoadipate-semialdehyde synthase45160646151663136Rat
1593790Rps3-ps7ribosomal protein S3, pseudogene 745168221851683038Rat
9348766LOC10369208460S ribosomal protein L27 pseudogene45174224651742683Rat
1560480Fezf1Fez family zinc finger 145176275151766078Rat
1559440Cadps2calcium dependent secretion activator 245178041552309641Rat
1596695Rnf133ring finger protein 13345214058452143357Rat
1595417Rnf148ring finger protein 14845214579852152508Rat
11494192LOC108350675uncharacterized LOC10835067545230586952306706Rat
620735Tas2r118taste receptor, type 2, member 11845244920852450107Rat
61919Slc13a1solute carrier family 13 member 145256917952647126Rat
41390060Thrap3-ps3thyroid hormone receptor associated protein 3, pseudogene 345261899952623801Rat
1591364Impdh2-ps1inosine monophosphate dehydrogenase 2, pseudogene 145273881252740348Rat
4145674IqubIQ motif and ubiquitin domain containing45293176852993795Rat
3155Ndufa5NADH:ubiquinone oxidoreductase subunit A545299732753005685Rat
11519975LOC108350676uncharacterized LOC10835067645301133153070210Rat
727860Asb15ankyrin repeat and SOCS box containing 1545302155353050846Rat
1592092Lmod2leiomodin 245306742853075124Rat
735144WaslWASP like actin nucleation promoting factor45308353653132061Rat
41046683LOC120102245thymosin beta-10-like45316672153167501Rat
1564219Hyal6hyaluronoglucosaminidase 645323811853250783Rat
1303194Hyal4hyaluronidase 445325617953274819Rat
620547Spam1sperm adhesion molecule 145330274553312913Rat
1566275Hyal5hyaluronoglucosaminidase 545334110553412280Rat
41007128LOC120102673small nucleolar RNA SNORA1745338598353386111Rat
1590212Tmem229atransmembrane protein 229A45344028753445286Rat
40982331LOC120102560U4 spliceosomal RNA45344725653447395Rat
41116076LOC120102770small nucleolar RNA U345347260253472711Rat
41340465LOC120102695small nucleolar RNA SNORA1745369658653696709Rat
1590185Suv39h2-ps1SUV39H2 histone lysine methyltransferase, pseudogene 145377885553779842Rat
619848Gpr37G protein-coupled receptor 3745413886054160927Rat
1562696Pot1protection of telomeres 145420533054263137Rat
41278566LOC120102621U7 small nuclear RNA45424986854249928Rat
41203940LOC120102612U7 small nuclear RNA45424994254250003Rat
40965413LOC120102246uncharacterized LOC12010224645426329454267934Rat
41126584Rnu6-321RNA, U6 small nuclear 32145430365054303756Rat
11449079LOC108350678uncharacterized LOC10835067845431932854357983Rat
41236019LOC120102247uncharacterized LOC12010224745443222054444023Rat
1588991Tk1-ps1thymidine kinase 1, pseudogene 145476723154775827Rat
41096447LOC120102705small nucleolar RNA SNORA1745488282354882955Rat
2320107Snx11-ps1sorting nexin 11, pseudogene 145491521154915991Rat
41167571LOC120102158uncharacterized LOC12010215845547681655492390Rat
41153446LOC120102756U2 spliceosomal RNA45579655355796713Rat
619858Grm8glutamate metabotropic receptor 845580576256731690Rat
41002790LOC120102608small nucleolar RNA SNORA73 family45625815156258354Rat
40972881LOC120102759U2 spliceosomal RNA45645195256452095Rat
2314878Mir592microRNA 59245650528056505375Rat
1560157Zfp800zinc finger protein 80045679832656849766Rat
41034677LOC120102248uncharacterized LOC12010224845680319656805686Rat
1587791H3f3cl2H3 histone, family 3C like 245684980056862528Rat
40930852LOC120102657U1 spliceosomal RNA45695629256956455Rat
2319954Gcc1GRIP and coiled-coil domain containing 145703081757042682Rat
621278Arf5ADP-ribosylation factor 545703852157041447Rat
1303047Fscn3fascin actin-bundling protein 345704279757052224Rat
620433Pax4paired box 445705845357065995Rat
631340Snd1staphylococcal nuclease and tudor domain containing 145709520557494501Rat
628724LipogeninLipogenin45735629857357553Rat
1560026Lrrc4leucine rich repeat containing 445743351857437114Rat
41397929LOC120102250uncharacterized LOC12010225045758550557626664Rat
2325456Mir129-1microRNA 129-145762429557624366Rat
3000Lepleptin45766112757675262Rat
1311336Rbm28RNA binding motif protein 2845772294657761935Rat
1559885Prrt4proline-rich transmembrane protein 445776605457777087Rat
1311108Impdh1inosine monophosphate dehydrogenase 145780184257817434Rat
41279683LOC120102707small nucleolar RNA SNORA1745783546757835618Rat
2319900Hilpdahypoxia inducible lipid droplet-associated45787108857874048Rat
1561814Garin1agolgi associated RAB2 interactor 1A45788001957890824Rat
9389926LOC103692085uncharacterized LOC10369208545788614857889290Rat
1564147Garin1bgolgi associated RAB2 interactor 1B45791518457938593Rat
620383Calucalumenin45794908657976589Rat
621033Opn1swopsin 1, short wave sensitive45797731757980457Rat
11403251Trnap-agg6transfer RNA proline (anticodon AGG) 645798962657989697Rat
1564459Ccdc136coiled-coil domain containing 13645799782558027598Rat
1308807Flncfilamin C45803408858061882Rat
621552Atp6v1fATPase H+ transporting V1 subunit F45806766658070628Rat
9472094Spmip1sperm microtubule inner protein 145807157458073496Rat
1561119Kcpkielin cysteine rich BMP regulator45808285658118170Rat
1310447Irf5interferon regulatory factor 545812757758140665Rat
1308938Tnpo3transportin 345814295458220365Rat
7563828LOC102552812uncharacterized LOC10255281245827229058276271Rat
41373976Snrpg-ps6small nuclear ribonucleoprotein polypeptide G, pseudogene 645830406958304945Rat
1560915Tspan33tetraspanin 3345830537858330013Rat
41285462LOC120102481uncharacterized LOC12010248145830681058311531Rat
3726Smosmoothened, frizzled class receptor45834362658373823Rat
41009975LOC120102483uncharacterized LOC12010248345837333558381144Rat
1564895Ahcyl2adenosylhomocysteinase-like 245838129058531061Rat
1588437Strip2striatin interacting protein 245853603458578279Rat
7590867Pgk1-ps1phosphoglycerate kinase 1, pseudogene 145857843058580694Rat
9298384Smkr1small lysine-rich protein 145859536358609149Rat
41058543LOC120102484uncharacterized LOC12010248445863484558638314Rat
1304603Nrf1nuclear respiratory factor 145866493258772328Rat
4888616Mir182microRNA 18245878481858784879Rat
2325582Mir96microRNA 9645878841158788516Rat
2325560Mir183microRNA 18345878861458788723Rat
4888613Mir3553microRNA 355345878861758788722Rat
2319288Ube2hubiquitin-conjugating enzyme E2H45883467458930156Rat
41334655LOC120102640small nucleolar RNA SNORA3245895139358951489Rat
1561099Zc3hc1zinc finger, C3HC-type containing 145898998959011925Rat
1309792Klhdc10kelch domain containing 1045902130059079118Rat
11503662LOC108350685uncharacterized LOC10835068545908451759086860Rat
1309682Tmem209transmembrane protein 20945910294359128636Rat
1559502Ssmem1serine-rich single-pass membrane protein 145912873059139029Rat
1305563Cpa2carboxypeptidase A245916035759183677Rat
41176579LOC120102251uncharacterized LOC12010225145916618959197472Rat
1563619Cpa4carboxypeptidase A445918828459212255Rat
7689603LOC102553416uncharacterized LOC10255341645920892859229667Rat
1303098Cpa5carboxypeptidase A545922975459249503Rat
2388Cpa1carboxypeptidase A145925741759263544Rat
1562034Cep41centrosomal protein 4145927121859312343Rat
1594589Mestmesoderm specific transcript45935444559364919Rat
1566215Copg2COPI coat complex subunit gamma 245936608659501591Rat
1584118Tsga13testis specific, 1345950177359522925Rat
9267310LOC103692110interferon-induced transmembrane protein 2 pseudogene45954898259549845Rat
1306012Klf14KLF transcription factor 1445955401159556933Rat
4888604Mir3556amicroRNA 3556a45965059659650713Rat
2325393Mir29amicroRNA 29a45965060859650695Rat
4888577Mir3587microRNA 358745965096059651022Rat
2325591Mir29b1microRNA 29b-145965098759651067Rat
40935195Trnad-auctransfer RNA aspartic acid (anticodon AUC)45978748459787557Rat
620076Mkln1muskelin 145981591260124047Rat
41397436LOC120102487uncharacterized LOC12010248745983240159845825Rat
41196392LOC120102488uncharacterized LOC12010248845987710159880952Rat
41038068LOC120102486uncharacterized LOC12010248645996954160002431Rat
11406136Vamp5lvesicle-associated membrane protein 5 like45997441259990317Rat
9410961Ppid-ps6peptidylprolyl isomerase D, pseudogene 646007650560077634Rat
621878Podxlpodocalyxin-like46013512460181829Rat
7632355Dppa4-ps8developmental pluripotency-associated 4, pseudogene 846014565860148378Rat
1561636Rpl38l1ribosomal protein L38 like 146029635860296687Rat
1586093Eif1-ps3eukaryotic translation initiation factor 1, pseudogene 346048509460485620Rat
7643646LOC102549088uncharacterized LOC10254908846061944960651830Rat
15974441700012A03RiklRIKEN cDNA 1700012A03 gene like46064478960652324Rat
11485345LOC108350687uncharacterized LOC10835068746069840160709474Rat
1308074Plxna4plexin A446072024661162206Rat
11439332LOC108350688uncharacterized LOC10835068846073321760817304Rat
1563055Elob-ps10elongin B, pseduogene 1046133418761334902Rat
1310325Chchd3coiled-coil-helix-coiled-coil-helix domain containing 346136035261616850Rat
1565435Hmgb1-ps5high-mobility group box 1, pseudogene 546180596461806669Rat
621791Exoc4exocyst complex component 446180770662584316Rat
41082831LOC120102446FAD-linked sulfhydryl oxidase ALR-like46209998762100799Rat
1594818LOC689234similar to catechol-O-methyltransferase domain containing 146261638962632132Rat
1308226Lrgukleucine-rich repeats and guanylate kinase domain containing46264722262770268Rat
1308985Slc35b4solute carrier family 35 member B446277699362799013Rat
1594775Ndufab1-ps2NADH:ubiquinone oxidoreductase subunit AB1, pseudogene 246287878162879361Rat
2092Akr1b1aldo-keto reductase family 1 member B146293203362946126Rat
708475Akr1b8aldo-keto reductase family 1, member B846299724163009815Rat
1308277Akr1b10aldo-keto reductase family 1 member B1046303845963060336Rat
620257Akr1b7aldo-keto reductase family 1, member B746305356063100934Rat
6497379Myl6-ps4myosin light chain 6, pseudogene 446306171263063832Rat
735018Bpgmbisphosphoglycerate mutase46313973063168581Rat
2256Cald1caldesmon 146326578163446938Rat
41095347LOC120102254uncharacterized LOC12010225446336104963362181Rat
1561995Agbl3AGBL carboxypeptidase 346344878963535538Rat
1549759Tmem140transmembrane protein 14046353647763547478Rat
1563238Cyrencell cycle regulator of NHEJ46354731163553394Rat
1306697Wdr91WD repeat domain 9146355436463591733Rat
1562852Stra8stimulated by retinoic acid 846360144363624777Rat
1565367Slc23a4solute carrier family 23 member 446363129263679687Rat
9074622LOC103692099uncharacterized LOC10369209946364549963654542Rat
1310318Cnot4CCR4-NOT transcription complex, subunit 446371277063814355Rat
7739309LOC102553126uncharacterized LOC10255312646381374863829271Rat
1309413Nup205nucleoporin 20546385493463920852Rat
1591053Stmp1short transmembrane mitochondrial protein 146392752363937355Rat
1359715Slc13a4solute carrier family 13 member 446394336963988852Rat
1308013Fam180afamily with sequence similarity 180, member A46399286764008047Rat
2319013Supt4h1-ps2SPT4 homolog, DSIF elongation factor subunit, pseudogene 246409466264097040Rat
619806Mtpnmyotrophin46415927364186686Rat
41021819LOC120102764U2 spliceosomal RNA46456265364562792Rat
41309461LOC120102671small nucleolar RNA SNORA1746458071464580842Rat
1588434Rhebl1-ps1RHEB like 1, pseudogene 146481823964819039Rat
7733981LOC102554507uncharacterized LOC10255450746500661265016735Rat
41195642LOC120102763U2 spliceosomal RNA46500716565007263Rat
620023Chrm2cholinergic receptor, muscarinic 246501540865149104Rat
2325414Mir490microRNA 49046504754865047631Rat
3444Ptnpleiotrophin46529373165375572Rat
735049Dgkidiacylglycerol kinase, iota46541087865872733Rat
1306040Creb3l2cAMP responsive element binding protein 3-like 246590757066112078Rat
620752Akr1d1aldo-keto reductase family 1, member D146615424666187505Rat
41237666Hmgb1-ps18high-mobility group box 1, pseudogene 1846649212666492794Rat
1560596Trim24tripartite motif-containing 2446656734266692029Rat
1566053SvoplSVOP like46669755066751699Rat
1305055Atp6v0a4ATPase H+ transporting V0 subunit a446676016366842126Rat
1588740Tmem213transmembrane protein 21346682504066831070Rat
1306271Kiaa1549KIAA1549 homolog46684067466968407Rat
1309236Zc3hav1lzinc finger CCCH-type containing, antiviral 1 like46699419267003207Rat
628694Zc3hav1zinc finger CCCH-type containing, antiviral 146701212967062428Rat
1561363Ift56intraflagellar transport 5646709062267154707Rat
11448653LOC108350693high mobility group protein B1 pseudogene46709136867092710Rat
1310722Ubn2ubinuclein 246716527867251562Rat
11451624Trnar-ccu2transfer RNA arginine (anticodon CCU) 246727344867273520Rat
1559476Fmc1formation of mitochondrial complex V assembly factor 146727410467282140Rat
1308651Luc7l2LUC7-like 2 pre-mRNA splicing factor46728759367347986Rat
9320161LOC103692107small nuclear ribonucleoprotein E pseudogene46732695167328859Rat
41372108LOC120102490insulin-induced gene 1 protein-like46733039967331371Rat
1587495Klrg2killer cell lectin like receptor G246736021667374867Rat
1565373Clec2lC-type lectin domain family 2, member L46739211867414539Rat
1309349Hipk2homeodomain interacting protein kinase 246743932767619223Rat
3826Tbxas1thromboxane A synthase 146766496367837096Rat
41142180LOC120102680small nucleolar RNA SNORA1746776730567767435Rat
1308628Parp12poly (ADP-ribose) polymerase family, member 1246782654867885356Rat
1592650Kdm7alysine demethylase 7A46789940767974264Rat
41161250Rnu6-604RNA, U6 small nuclear 60446803216868032274Rat
1583604Chmp4bl1chromatin modifying protein 4B-like 146804974268050791Rat
1310346Slc37a3solute carrier family 37, member 346810931468153590Rat
1565263Rab19RAB19, member RAS oncogene family46815715968166889Rat
1303251Mkrn1makorin ring finger protein 146817590868197216Rat
40962184LOC120102609small nucleolar RNA SNORA7146819917868199301Rat
1306142Dennd2aDENN domain containing 2A46823301668332235Rat
7643066Srsf3-ps6serine and arginine rich splicing factor 3, pseudogene 646834229268343400Rat
1311058Adck2aarF domain containing kinase 246834885368362725Rat
7626918Tmsb10-ps5thymosin, beta 10, pseudogene 546836299068367488Rat
1308130Ndufb2NADH:ubiquinone oxidoreductase subunit B246836752668374609Rat
619908BrafB-Raf proto-oncogene, serine/threonine kinase46837548468510652Rat
41225554Rpl26-ps11ribosomal protein L26, pseudogene 1146839090368395785Rat
7666339Fth1-ps1ferritin heavy chain 1, pseudogene 146843185768436899Rat
1309217Mrps33mitochondrial ribosomal protein S3346859672968605547Rat
40994299LOC120102257uncharacterized LOC12010225746861471568622669Rat
9116769LOC103692103uncharacterized LOC10369210346862670668655436Rat
1585938Tmem178btransmembrane protein 178B46865942569035690Rat
7574135LOC102555151uncharacterized LOC10255515146892487368939499Rat
1562046Agkacylglycerol kinase46911485069193989Rat
1563986Dennd11DENN domain containing 1146919716169266013Rat
1587197Wee2WEE2 oocyte meiosis inhibiting kinase46923904369261576Rat
3760Ssbp1single stranded DNA binding protein 146926602469276135Rat
1560602Tas2r137taste receptor, type 2, member 13746927927669286935Rat
1561194Tas2r108taste receptor, type 2, member 10846928766769288581Rat
1311823Prss37serine protease 3746932297769334555Rat
1333433Or9a7-ps1olfactory receptor family 9 subfamily A member 7, pseudogene 146936072369361664Rat
1332737Or9a4olfactory receptor family 9 subfamily A member 446940160669402550Rat
1584755Clec5aC-type lectin domain containing 5A46940712569416872Rat
1560649Tas2r138taste receptor, type 2, member 13846942834469429339Rat
9369725Mgammaltase-glucoamylase46944162669602068Rat
1308368Mgam2maltase-glucoamylase 246962402469715782Rat
1564286Moxd2monooxygenase, DBH-like 246972469369733188Rat
1303054Prss58serine protease 5846975264669757306Rat
1302947Prss59protease, serine 5946976420669785111Rat
1563848Prss3bl1protease, serine, 3B like 146979766169803606Rat
7085851810009J06RiklRIKEN cDNA 1810009J06 gene like46981510769826206Rat
6496223Poldip2-ps1DNA polymerase delta interacting protein 2, pseudogene 146985630069858239Rat
708437Prss3bprotease, serine, 3B46987181069875518Rat
6493911Trbvl1T cell receptor beta variable like 147003688070038079Rat
1311446Prss3serine protease 347020308870206562Rat
41142645Cdc42-ps1cell division cycle 42, pseudogene 147020715770207873Rat
1560283Try5trypsin 547021376070217034Rat
1359400Try10trypsin 1047024431470247819Rat
3418Prss2protease, serine, 247027830470283385Rat
1598148Prss2-ps1protease, serine, 2, pseudogene 147031769070320752Rat
7618053LOC102554637anionic trypsin-2-like47033167370335768Rat
1597830Prss2l1protease, serine, 2 like 147034433870348069Rat
3417Prss1serine protease 147036458970367792Rat
41021783LOC120102259uncharacterized LOC12010225947042230970428425Rat
41226242LOC120102568U6 spliceosomal RNA47044930770449413Rat
1306163Ephb6Eph receptor B647049197370507230Rat
69335Trpv6transient receptor potential cation channel, subfamily V, member 647050734770523013Rat
620636Trpv5transient receptor potential cation channel, subfamily V, member 547053643270562743Rat
1595510Llcfc1LLLL and CFNLAS motif containing 147056620670567592Rat
1565470KelKell metallo-endopeptidase (Kell blood group)47056824170585666Rat
2323329Ndufa2-ps2NADH:ubiquinone oxidoreductase subunit A2, pseudogene 247060065270601022Rat
1562066Or9a2olfactory receptor family 9 subfamily A member 247067145170672395Rat
2323279Dtl-ps1denticleless E3 ubiquitin protein ligase, pseudogene 147075251370753615Rat
70946Pipprolactin induced protein47078762770791921Rat
620869Sval2seminal vesicle antigen-like 247080936670813330Rat
620867Sval1seminal vesicle antigen-like 147084522870856192Rat
1595436Tas2r139taste receptor, type 2, member 13947098528070986239Rat
1562314Tas2r144taste receptor, type 2, member 14447108618271087141Rat
735188Gstk1glutathione S-transferase kappa 147111897971123298Rat
2321500Prdx1-ps1peroxiredoxin 1, pseudogene 147114152971143722Rat
1594187Tmem139transmembrane protein 13947114707271149151Rat
69274Casp2caspase 247114963271167388Rat
41054799LOC120102741small nucleolar RNA SNORD8847116051571160603Rat
2360Clcn1chloride voltage-gated channel 147117194971201483Rat
1560653Fam131bfamily with sequence similarity 131, member B47120103771210292Rat
41384154LOC120102260uncharacterized LOC12010226047120915971219286Rat
620698Zyxzyxin47123676771246553Rat
1304680Epha1Eph receptor A147124640971260920Rat
41267017LOC120102261uncharacterized LOC12010226147126100871284951Rat
1566290Tas2r143taste receptor, type 2, member 14347128785771288741Rat
1561078Tas2r135taste receptor, type 2, member 13547129291271293877Rat
727853Tas2r126taste receptor, type 2, member 12647133382171334747Rat
1334194Or2r11olfactory receptor family 2 subfamily R member 1147136649071367431Rat
1333188Or2r3olfactory receptor family 2 subfamily R member 347137786971378810Rat
1333811Or2r3bolfactory receptor family 2 subfamily R member 3B47138952671390464Rat
1333381Or10ac1olfactory receptor family 10 subfamily AC member 147145036371451316Rat
1359405Fam115efamily with sequence similarity 115, member E47151027871524582Rat
1591778Tcaf2cTRPM8 channel associated factor 2C47155370071567820Rat
1565474Tcaf1TRPM8 channel-associated factor 147158967471639274Rat
1334371Or2f5-ps1olfactory receptor family 2 subfamily F member 5, pseudogene 147166245671662897Rat
11498065LOC10835080840S ribosomal protein S23 pseudogene47167471371675154Rat
1332594Or2f1olfactory receptor family 2 subfamily F member 147168893671689889Rat
1333677Or2f1bolfactory receptor family 2 subfamily F member 1B47170732671708276Rat
1333950Or2f2olfactory receptor family 2 subfamily F member 247174019371741149Rat
41357395LOC120102713small nucleolar RNA SNORA1747175492771755060Rat
1333504Or13m2olfactory receptor family 13 subfamily M member 247175974771760682Rat
1333975Or2q1olfactory receptor family 2 subfamily Q member 147177536871776300Rat
41399876LOC120102605U6 spliceosomal RNA47179492871795029Rat
1333367Or6b1olfactory receptor family 6 subfamily B member 147179998271800917Rat
1334415Or2a5olfactory receptor family 2 subfamily A member 547185608471857016Rat
1332716Or2a25olfactory receptor family 2 subfamily A member 2547187857871879519Rat
1333772Or2a12-ps1olfactory receptor family 2 subfamily A member 12, pseudogene 147189871971899655Rat
1333327Olr815-psolfactory receptor pseudogene 81547190616971906509Rat
1333098Or2a14olfactory receptor family 2 subfamily A member 1447194234371943275Rat
1587195Or2a52olfactory receptor family 2 subfamily A member 5247196511871966047Rat
1334209Or2a7olfactory receptor family 2 subfamily A member 747197902671979958Rat
40956713LOC120102160uncharacterized LOC12010216047198640571989140Rat
1332872Or2a51olfactory receptor family 2 subfamily A member 5147201281972013760Rat
11419404LOC108350809glyceraldehyde-3-phosphate dehydrogenase pseudogene47201417272015171Rat
1333011Or2a20olfactory receptor family 2 subfamily A member 2047203190972032871Rat
1334159Or2a57olfactory receptor family 2 subfamily A member 5747204632872047290Rat
7517929LOC102548553uncharacterized LOC10254855347208172272088278Rat
620718Arhgef5Rho guanine nucleotide exchange factor 547208720572112316Rat
1563929NoboxNOBOX oogenesis homeobox47212893172134436Rat
1589408Tpk1thiamin pyrophosphokinase 147217013472557707Rat
11481974LOC108350700uncharacterized LOC10835070047224919372293064Rat
41181679LOC120102665small nucleolar RNA SNORA1747278134972781478Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10144D4Mgh1624146293326962933508Ratregion
10145D4Arb1039646293321762933611Ratregion
11171D4Hri215547036205170362206Ratregion
11172D4Wox2419447036204170362226Ratregion
11173D4Arb829647036201370362309Ratregion
11174D4Mgh3238147027879370279197Ratregion
11176D4Wox2320047028245670282627Ratregion
11177D4Arb937047027962870279998Ratregion
34238D4Mgh225043952426439524530Ratregion
34282D4Mgh1513945669879056698927Ratregion
34379D4Mgh310045824513158245229Ratregion
34716D4Mgh1413343950527539505420Ratregion
11342D4Got4318446927604269276226Ratregion
11401D4Arb1218447041122270411406Ratregion
33656D4Mit99945664777656647873Ratregion
33682D7Mit1820046792233367922521Ratregion
33711D4Mit512947316984673169967Ratregion
33757D4Mit224945711443257114705Ratregion
36037D4Rat1313944199617341996312Ratregion
36181D4Rat2616047036201770362197Ratregion
35260D4Rat2217046227785562278020Ratregion
36852D4Rat1816946622973366229894Ratregion
37012D4Rat2512746699318566993302Ratregion
37026D4Rat2712447250051072500627Ratregion
36530D4Rat1713944839566048395759Ratregion
36540D4Rat2415045994893559949149Ratregion
36753D4Rat2014046105775661057896Ratregion
34845D4Rat1913347171132571711456Ratregion
34967D4Rat1516245011984850119996Ratregion
35082D4Rat7313645866129958661423Ratregion
35625D4Rat1417944446372044463908Ratregion
39688D4Rat21110644019349640193597Ratregion
39748D4Rat15715045406901054069154Ratregion
39918D4Rat15521944952467449524880Ratregion
38104D4Rat11824746571731765717565Ratregion
38116D4Rat13213046015269560152815Ratregion
38310D4Rat13516846572068165720843Ratregion
40620D4Rat22617146283772562837880Ratregion
40698D4Rat16324947370376673704013Ratregion
38434D4Rat13413945275413852754255Ratregion
38728D4Rat12226146595785065958103Ratregion
39980D4Rat15622144917811649178333Ratregion
40008D4Rat22422345136763751367850Ratregion
38966D4Rat9320046865345668653663Ratregion
39104D4Rat9610246660935866609456Ratregion
39110D4Rat10123344913190649132093Ratregion
39266D4Rat10224646738666967386927Ratregion
39548D4Rat15420344803565448035857Ratregion
42142D4Arb1133046067096960671203Ratregion
42158D4Arb2613043950527539505418Ratregion
42164D4Arb2921046452873964528994Ratregion
42170D4Arb3416546926030869260484Ratregion
42174D4Arb3612047028245570282627Ratregion
42176D4Arb376046294650162946604Ratregion
42178D4Arb3812047036204870362226Ratregion
41202D4Rat15219744078009840780283Ratregion
42694D4Rat22520045978029159780469Ratregion
42695D4Rat29120446064368360643874Ratregion
42696D4Rat25723346286893062869155Ratregion
42697D4Rat25620046343526263435482Ratregion
40910D4Rat15823245784751957847754Ratregion
41124D4Rat16220546969588469696096Ratregion
41846D4Rat25423345316451053164745Ratregion
41888D4Rat28224544086875240869000Ratregion
41902D4Rat25321044724167547241885Ratregion
43788D4Got2724744246796842468215Ratregion
43789D4Got3218945079114750791338Ratregion
43790D4Got3413344603747946037612Ratregion
43791D4Got2927544994382349944098Ratregion
43793D4Got3112645326282153262949Ratregion
43794D4Got14622744711539047115617Ratregion
43795D4Wox1010045863587758635984Ratregion
43796D4Got4218045998245059982630Ratregion
43797D4Got3519845848983358490031Ratregion
43798D4Got4017746096550960965688Ratregion
43800D4Got3716246046211060462272Ratregion
43801D4Got3820846038142060381628Ratregion
43802D4Got4116246169765861697820Ratregion
43803D4Got399945843213358432232Ratregion
43805D4Got4418046511727765117457Ratregion
43806D4Got4714846865726268657410Ratregion
43807D4Got4822546680027066800498Ratregion
43808D4Got4925046767659267676842Ratregion
43809D4Got5212047160242071602540Ratregion
43810D4Got5120647124172471241930Ratregion
60805D4Wox615047331865573318803Ratregion
60806D4Wox714647275270372752834Ratregion
60429D4Got14714645499159154991735Ratregion
60436D4Got2629844019331240193610Ratregion
60438D4Got3026345114149051141755Ratregion
60439D4Got3316245614286156143023Ratregion
60440D4Got4517246774119167741363Ratregion
60443D4Got5021246555470665554918Ratregion
60446D4Got5824647139971471399958Ratregion
629591D4Hmgc115944672719146727354Ratregion
62480D4Uia217846936437569364557Ratregion
66667D4Mco131644594826945948595Ratregion
1627601D4Got20820746821391568214121Ratregion
1629744D4Wox4113145917017659170307Ratregion
1639418D4Got3616645700072657000890Ratregion
1639433D4Got30314845581475255814897Ratregion
1633620D4Got20626945988457259884841Ratregion
1635755D4Wox3710645839515158395257Ratregion
1635866D4Got20719147206521772065403Ratregion
1636528D2Got33213144970212349702153Ratregion
1636924D4Wox5416644672715946727325Ratregion
1637871D4Wox4230546294791362948220Ratregion
1638392D4Got30110046468704964687149Ratregion
1633811D4Got24622046851801768518239Ratregion
1634181D4Got28818946513055365130742Ratregion
1634619D4Got25013944276291542763049Ratregion
2290565D4Rhw1720846305580163056009Ratregion
7206384fj64a08.x1044510169745102827Ratregion
7206028Olfr44952447180016271800686Ratregion
7193096AI76384112446341351963413643Ratregion
7206272Opn1sw51045797980357980313Ratregion
7206464Smo94145837247558373416Ratregion
5038644BB2834669946903533269035431Ratregion
5036029PMC97559P111945873824758738366Ratregion
5038776RH12732618446814184168142025Ratregion
5039212RH12757619045936560559365795Ratregion
5036396PMC21729P119145767222857672419Ratregion
5039036RH12747618247116719371167375Ratregion
5039044RH12748019445299579452995988Ratregion
5036573AU04847316344995639549956437Ratregion
5036741AU04905614745846563458465781Ratregion
5036749AU04908118546755668767556872Ratregion
5036875AU04948417944968424349684422Ratregion
5037159IB80918245853065458530836Ratregion
5035591WI-2117024646415692264157168Ratregion
5035637D7S29649445852786858527962Ratregion
5033869RH14042318245413895154139133Ratregion
5033909RH14057718546749730167497486Ratregion
5025984RH13045718344405177444051957Ratregion
7206214Insig118646733053167330696Ratregion
5031516AU04807115244137361441373766Ratregion
5034037RH14111919147124609171246282Ratregion
5034095RH14134218844636575946365947Ratregion
5028843RH14254110946416610464166213Ratregion
5034271RH14200818247120106771201249Ratregion
5034293RH14209621346722961067229823Ratregion
5026300RH13168420046590784865908048Ratregion
5028913RH14279723444567204645672280Ratregion
5029027RH14323921546335755663357771Ratregion
5026456RH13228420345344058153440784Ratregion
5026670RH13309018946393923663939425Ratregion
5026698RH13319319945787488457875083Ratregion
5026758RH13341918146072035060720532Ratregion
5026830RH13369521146701225167012462Ratregion
5029563BE09550915146730183067301983Ratregion
5032273AW0498459945939876059398859Ratregion
5032329Copg2as142945936597159366400Ratregion
5027010RH13438619746415951764159714Ratregion
5027083STS-H2311716045743507257435232Ratregion
5029733BF3934099746316218463162281Ratregion
5035350BQ20563415046702926067029410Ratregion
5035475AI40660816045877212458772284Ratregion
5027111GDB:131795414645195579551955941Ratregion
5027139A005W0915345050310950503262Ratregion
5027175GDB:45853636446293893862939002Ratregion
5029735BE10221520845902419459024402Ratregion
5029843BG37711616246676039866760560Ratregion
5032661RH13482920946028356560283774Ratregion
5034888AI41107313445787354557873679Ratregion
5035282BF38772015244042285340423004Ratregion
5030081BE11006315245936519059365342Ratregion
5033007RH13726018246837884068379022Ratregion
5025012AW55010813645178069051780826Ratregion
5025014AU02331911146926168769261798Ratregion
5027697WI-1479515046204024562040395Ratregion
5033025RH13731619846013535160135550Ratregion
5033123RH13768112145194339751943518Ratregion
5030429BF39757421346734479267345005Ratregion
5030467BF39786514345177263651772779Ratregion
5033231RH13806719646919721469197410Ratregion
5033313RH13837712046316777563167895Ratregion
5025312RH12783621844214200542142223Ratregion
5025404RH12818421046393692463937134Ratregion
5025426RH12827020546293221962932424Ratregion
5030681BI30178415445287830552878465Ratregion
5030711BF39891219446684478166844975Ratregion
5033355RH13852614746593268265932829Ratregion
5025650RH12913018246345837663458558Ratregion
5028358RH6611815345344395853444111Ratregion
5030927BF39945715945801443358014592Ratregion
5025934RH13025621446013207260132286Ratregion
5028454AI4474699946837913168379230Ratregion
5052045RH948089945767255957672658Ratregion
5054895RH14348629946701328467013583Ratregion
5051214RH13450518546354756063547745Ratregion
5053653RH14277327045967530159675571Ratregion
5055919RH14407823345015838950158622Ratregion
5056219RH14425218146016245460162635Ratregion
5051763RH9464410947119985571199964Ratregion
5053793RH14285413346837617868376311Ratregion
5056645RH14449818446542025165420435Ratregion
5051817RH9467518046294666362946843Ratregion
5054585RH14330929444045571040456004Ratregion
5054635RH14333719346013072260130915Ratregion
5057842BF38624717644731518847315364Ratregion
5055085RH14359716146345404563454206Ratregion
5058018BF38647515045997741759977567Ratregion
5055903RH14406910045139779651397896Ratregion
5056313RH14430610045741846857418568Ratregion
5058840BF38714218346903366369033846Ratregion
5056687RH14452224744685889646859143Ratregion
5058084AI07045121045685115456851364Ratregion
5052739RH14224417646415697664157152Ratregion
5058968BE10264019746564924665649443Ratregion
5059746BE09779019945938911959389318Ratregion
5059746BE09779019945939458159394780Ratregion
5052935RH14235916844183074041830908Ratregion
5052985RH14238818946072050760720696Ratregion
5053005RH14239915045853060158530751Ratregion
5059912BF40010516445308287653083040Ratregion
5058322BG37628813846317345663173594Ratregion
5058354BF41963419346052302160523214Ratregion
5058356AI13694218846817893668179124Ratregion
5052289MDB107115845027845150278609Ratregion
5059204BF38764017045869303258693202Ratregion
5050400RH13403519744496792744968117Ratregion
5059250BF38788015845899725058997408Ratregion
5059318BG37729512945857802058578149Ratregion
5057712BF38606316245154219951542361Ratregion
5057834BF38624017346743648667436659Ratregion
5050490RH13408621846393245363932671Ratregion
5053629RH14275926146373478763735048Ratregion
5053919RH14292630044539833345398633Ratregion
5054073RH14301510846182074061820848Ratregion
5053101RH14245410245818678058186882Ratregion
5051707RH9461116946344499863445167Ratregion
5041882RH12911318145926329059263471Ratregion
5040724RH12844721945814312758143336Ratregion
5040756RH12846520847056830270568510Ratregion
5043448RH13003119444633402146334214Ratregion
5041164RH12869918544601944746019632Ratregion
5043780RH13022321546701224967012464Ratregion
5045516RH13122218046919367369193853Ratregion
5041352RH12880816246725137367251535Ratregion
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5041530RH12891015746012843660128593Ratregion
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5046150RH13158715346529381065293963Ratregion
5044750RH13078220745899006558990272Ratregion
5044834RH13083020345877040658770609Ratregion
5044348RH13055119045941214359412333Ratregion
5045376RH13114219445787378357873977Ratregion
5047484RH13235420645299441152994617Ratregion
5045160RH13101818146783643967837043Ratregion
5045212RH13104818944404993944050128Ratregion
5047662RH13245620246706264167062844Ratregion
5047688RH13247121845256925852569476Ratregion
5045640RH13129418246183072961830911Ratregion
5049276RH13338721146684089366841104Ratregion
5046656RH13187918146836252168362702Ratregion
5045920RH13145519646217805162178247Ratregion
5049004RH13323119745905660159056798Ratregion
5046896RH13201719046300985763010047Ratregion
5048120RH13272019446735207267352266Ratregion
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5049772RH13367320147079130970791801Ratregion
5047294RH13224518046922959569229775Ratregion
5047340RH13227119445027815550278349Ratregion
5042594RH12952919746814247968142676Ratregion
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5042914RH12971918646394347763943663Ratregion
5039390RH12767821145797623157976442Ratregion
5039804RH12791619347092705070927243Ratregion
5040010RH12803821745308558053085797Ratregion
5040044RH12805719646732899167329187Ratregion
5040044RH12805719646732899167329187Ratregion
5042606RH12953621845293187652932094Ratregion
5042684RH12958221844183065741830875Ratregion
5042746RH12962120247050701770507219Ratregion
5042828RH12966915745704128957041446Ratregion
5041024RH12861921946012370760123926Ratregion
5040318RH12821418946415697264157161Ratregion
5041326RH12879318244183058041830762Ratregion
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5507533REN11485826545684892256849187Ratregion
5507535REN11543925645701091357011169Ratregion
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5505560GDB:45854138046748371567483795Ratregion
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5506630ECD0020294644367803743678983Ratregion
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5505039Met7044581953945819609Ratregion
5501449Tcrb-C12547041796070418727Ratregion
5501691CHRM259546514402965144624Ratregion
5501754MARC_11525-11526:1001518036:115845796634257967118Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5501874MARC_16655-16656:1017778016:121547115216871152636Ratregion
5505518UniSTS:1040810546072029760720402Ratregion
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5502251AU04127717545837354958373724Ratregion
Position Markers

Flank 1: (D4Arb26)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,505,275 - 39,505,418 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,317NCBI
Rnor_5.0437,534,124 - 37,534,266UniSTS
RGSC_v3.4436,592,628 - 36,592,771RGD
RGSC_v3.4436,592,629 - 36,592,771UniSTS
RGSC_v3.1436,711,168 - 36,711,311RGD
Celera434,949,819 - 34,949,961UniSTS
RH 2.0 Map4299.7RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD
Peak: (D4Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2456,698,790 - 56,698,927 (+)MAPPER
Rnor_6.0455,375,865 - 55,376,001NCBI
Rnor_5.0455,118,586 - 55,118,722UniSTS
RGSC_v3.4454,879,077 - 54,879,214RGD
RGSC_v3.4454,879,078 - 54,879,214UniSTS
RGSC_v3.1455,129,235 - 55,129,371RGD
Celera451,815,819 - 51,815,955UniSTS
RH 3.4 Map4301.72UniSTS
RH 3.4 Map4301.72RGD
Cytogenetic Map4q22UniSTS
Flank 2: (D4Arb30)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4473,972,454 - 73,972,591UniSTS
RGSC_v3.4473,972,453 - 73,972,591RGD
RGSC_v3.1474,248,583 - 74,248,721RGD
Celera469,789,851 - 69,789,980UniSTS
RH 3.4 Map4465.4RGD
RH 3.4 Map4465.4UniSTS
RH 2.0 Map4512.0RGD
SHRSP x BN Map437.38RGD
FHH x ACI Map445.77RGD
Cytogenetic Map4q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46699318572752834Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)46738666970362197Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Aia2

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Irf5 and Ptn as RA associated genes and Irf5 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 248 known and 53 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general transfer of this QTL to congenic and subcongenic strains had no effect on arthritis severity 629560