Pur1 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Pur1 (Proteinuria QTL 1) Rattus norvegicus

Symbol: Pur1
Name: Proteinuria QTL 1
RGD ID: 61453
Trait: total urine protein amount   (VT:0000032)    
Measurement Type: urine protein level   (CMO:0000591)    
LOD Score: 18.06
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01339,372,927 - 42,310,885RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01344,494,434 - 47,416,214RGDRnor5.0
RGSC_v3.41335,472,372 - 38,489,943RGDRGSC3.4
RGSC_v3.1130 - 38,503,986RGD
Cross Type: (BUF/Mna x WKY/NCrj) x BUF/Mna backcross
Strains Crossed: BUF/Mna WKY/NCrlCrlj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
proteinuria  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
BUF/Mna  (IEA)
WKY/NCrlCrlj  (IEA)

References

Related QTLs

Related QTL Description Reference
Pur16 sub_region RGD:2292230


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1306427Dpp10dipeptidyl peptidase like 10133943059041173706Rat
9387520LOC103691651uncharacterized LOC103691651134078954640792350Rat
11432035LOC108352624uncharacterized LOC108352624134103988141047589Rat
7713048LOC102554127uncharacterized LOC102554127134136937041371090Rat
71024Actr3actin related protein 3134169552041738622Rat
7577736LOC102554198uncharacterized LOC102554198134173894241758961Rat
2324561LOC100362110LRRGT00155-like134180254741836153Rat
11470297LOC108352523uncharacterized LOC108352523134185155941860791Rat
1308125Slc35f5solute carrier family 35, member F5134188273341922358Rat
1306745Gpr39G protein-coupled receptor 39134200864242220737Rat
1549754Lypd1Ly6/Plaur domain containing 1134221988442263024Rat
1564507Nckap5NCK-associated protein 5134226587543049232Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34351D13Mgh4150134231074442310885Ratregion
34371D13Mgh3142133937292739373058Ratregion
36747D13Rat20138134215554342155682Ratregion
38530D13Rat94216134116532541165538Ratregion
41222D13Rat114145134224634842246476Ratregion
41338D13Rat115138133963977539639912Ratregion
42989D13Rat199149134153180741531955Ratregion
42990D13Rat148149134023139940231550Ratregion
40776D13Rat117212134143313141433342Ratregion
45024D13Got109127133947262439472750Ratregion
45025D13Got8111134106005741060167Ratregion
45026D13Got6180134228144242281621Ratregion
45035D13Got1219134104352741043742Ratregion
45036D13Got3290134133350241333791Ratregion
45037D13Got5252134137317141373433Ratregion
45039D13Got4169134203342042033588Ratregion
45040D13Got7149134179409541794243Ratregion
1581962D13Hmgc86325134029516340295487Ratregion
1582020D13Hmgc89207134126509941265305Ratregion
1633101D13Got236183134027836140278541Ratregion
1637510D13Got260255133979899539799249Ratregion
2324937D13Hmgc93173134230173242301904Ratregion
7191227D13MGH3142133937292639373058Ratregion
5032052AU046910135134188170141881835Ratregion
5032335AI853408118134222018442220301Ratregion
5033201RH137955147134222149942221645Ratregion
5030645BI301555173134174797641748148Ratregion
5056019RH144136105134053474140534845Ratregion
5056745RH144555170133943216939432338Ratregion
5047192RH132186182134030218440302365Ratregion
5066596AU048264136134227874942278884Ratregion
5066722AU048189170134162779441627962Ratregion
5066890AU048090215134049304840493262Ratregion
5067520AU047695164134028756640287729Ratregion
5068446AU047140128134230938442309508Ratregion
5068884AU046866236134215663042156860Ratregion
5088515AU048615186134028525840285438Ratregion
5089595AU049248172133945004239450211Ratregion
5081683BF41457692134221223342212324Ratregion
5088425AU048561138134135439741354504Ratregion
5088425AU048561138134135436741354504Ratregion
5089095AU048951141134157244841572588Ratregion
5506795G45485299134197138441971682Ratregion
10755478rs105290310133950130039501300Ratregion
Position Markers

Flank 1: (D13Mgh3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01339,372,927 - 39,373,058NCBI
Rnor_5.01344,494,434 - 44,494,565UniSTS
RGSC_v3.41335,472,372 - 35,472,503UniSTS
Celera1334,363,454 - 34,363,585UniSTS
RH 3.4 Map130.0UniSTS
RH 3.4 Map130.0RGD
RH 2.0 Map13168.5RGD
Cytogenetic Map13 RGD
Flank 2: (D13Mgh4)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01342,310,744 - 42,310,885NCBI
Rnor_5.01347,416,073 - 47,416,214UniSTS
RGSC_v3.41338,489,802 - 38,489,943UniSTS
RGSC_v3.41338,489,801 - 38,489,943RGD
RGSC_v3.11338,503,844 - 38,503,986RGD
Celera1337,210,510 - 37,210,651UniSTS
RH 2.0 Map13248.6RGD
SHRSP x BN Map137.9399RGD
FHH x ACI Map139.21RGD
Cytogenetic Map13q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13147622148Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13901674239373058Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13901674250513953Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131409633059096330Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131409633059096330Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131444158250799665Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131444158251577031Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131981081464810814Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)132005247765052477Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132148248158537177Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132800833873008338Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132858445273584452Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132907693474076934Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132907693474076934Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133530126346444796Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133614753364868393Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133614753399968921Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133734634882346348Rat
61453Pur1Proteinuria QTL 118.06total urine protein amount (VT:0000032)urine protein level (CMO:0000591)133937292742310885Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133937292784372927Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133950130093652524Rat
2292232Pur16Proteinuria QTL 1617.2total urine protein amount (VT:0000032)urine protein level (CMO:0000591)134106005747227923Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134215554344588509Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)134231074486833540Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)134231074487310744Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pur1

RGD Curation Notes
Note Type Note Reference
qtl_cross_type (BUF/Mna x WKY/NCrj) x BUF/Mna backcross