Cia3 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Cia3 (Collagen induced arthritis QTL 3) Rattus norvegicus

Symbol: Cia3
Name: Collagen induced arthritis QTL 3
RGD ID: 61434
Also known as: Type II Collagen induced arthritis QTL 3
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0499,066,823 - 144,066,823RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04163,843,971 - 208,843,971RGDRnor5.0
RGSC_v3.44104,415,843 - 149,415,843RGDRGSC3.4
RGSC_v3.14104,660,324 - 149,660,324RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

Related QTLs

Related QTL Description Reference
Oia2 maps to same region RGD:61087
Eau1 maps to same region RGD:61073
Aia3 interacts with RGD:61062
Ean2 maps to same region RGD:2306769
Pia5 interacts with RGD:61062
Aia5 maps to same region RGD:629560
Scwia1 maps to same region RGD:61064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2590Fabp1fatty acid binding protein 149906318199066957Rat
1305105Smyd1SET and MYND domain containing 149907112299125143Rat
7727476LOC102549052low molecular weight phosphotyrosine protein phosphatase-like49911976399121314Rat
1306495Krcc1lysine-rich coiled-coil 149913373599148236Rat
7647571LOC102552663uncharacterized LOC10255266349916139899169504Rat
11434940LOC108350716uncharacterized LOC10835071649916942399186027Rat
2317Cd8bCD8b molecule49918596099201887Rat
1587245LOC500198similar to Tubulin alpha-3 chain (Alpha-tubulin 3)49920286799215408Rat
11365136LOC108350717uncharacterized LOC10835071749921543199217458Rat
2316Cd8aCD8a molecule49921764099243352Rat
1309766Rmnd5arequired for meiotic nuclear division 5 homolog A49924915999305805Rat
6500636LOC100909974uncharacterized LOC10090997449930604399399123Rat
620586Rnf103ring finger protein 10349939847999415193Rat
708556Chmp3charged multivesicular body protein 349944921399496156Rat
708351Kdm3alysine demethylase 3A49950316099547315Rat
1305230Reep1receptor accessory protein 149961862299735329Rat
1307065Mrpl35mitochondrial ribosomal protein L3549973879299749665Rat
1310684Immtinner membrane mitochondrial protein49975344699789921Rat
1565582Ptcd3Pentatricopeptide repeat domain 349979564699822960Rat
620824Polr1aRNA polymerase I subunit A49982296499903969Rat
7727762LOC102552926uncharacterized LOC10255292649990120299907617Rat
2319759LOC100361613hypothetical LOC10036161349991669099919416Rat
7553872LOC102556495uncharacterized LOC10255649549993475399937421Rat
620875St3gal5ST3 beta-galactoside alpha-2,3-sialyltransferase 549993749999999905Rat
7524413LOC102546367uncharacterized LOC10254636749997288199976525Rat
1561512Atoh8atonal bHLH transcription factor 84100067341100099517Rat
7543255LOC102549599S-formylglutathione hydrolase-like4100158527100159602Rat
621700Sftpbsurfactant protein B4100166855100175941Rat
1308103Usp39ubiquitin specific peptidase 394100181408100211425Rat
1587471LOC691113hypothetical protein LOC6911134100208612100215824Rat
619998Tmem150atransmembrane protein 150A4100217986100222131Rat
1359698Rnf181ring finger protein 1814100222087100228809Rat
620419Vamp5vesicle-associated membrane protein 54100231561100232560Rat
620421Vamp8vesicle-associated membrane protein 84100250301100252756Rat
68383Ggcxgamma-glutamyl carboxylase4100277345100293097Rat
619985Mat2amethionine adenosyltransferase 2A4100297478100303047Rat
11355186LOC108350864ATP synthase subunit g, mitochondrial pseudogene4100362619100363230Rat
1587427Sh2d6SH2 domain containing 64100373808100382209Rat
1311724Capgcapping actin protein, gelsolin like4100395693100419447Rat
1306408Elmod3ELMO domain containing 34100422256100465152Rat
7588245LOC102549229endochitinase 2-like4100449487100451644Rat
628802Retsatretinol saturase4100465365100474128Rat
620445Tgoln2trans-golgi network protein 24100475415100483229Rat
7699711LOC102549526uncharacterized LOC1025495264100484485100498975Rat
1311671Tcf7l1transcription factor 7 like 14100492796100660401Rat
7562795LOC102549458uncharacterized LOC1025494584100577408100581521Rat
7716905LOC102549702uncharacterized LOC1025497024100716730100720289Rat
1591490Kcmf1potassium channel modulatory factor 14100759526100783017Rat
2323800LOC100359493thymosin, beta 10-like4100835563100835753Rat
62022Tmsb10thymosin, beta 104100882216100883303Rat
621797Dnah6dynein, axonemal, heavy chain 64100936834101157511Rat
7639290LOC102550335prohibitin-like4100955585100956580Rat
9173236LOC103692155uncharacterized LOC1036921554101162335101167473Rat
619821Suclg1succinate-CoA ligase GDP/ADP-forming subunit alpha4101181315101210692Rat
9083581LOC103692156uncharacterized LOC1036921564101292794101319043Rat
1334150Olr822-psolfactory receptor pseudogene 8224101350108101350974Rat
1562515RGD1562515similar to RIKEN cDNA 4931417E114101392229101393329Rat
11364654LOC108350814Ig kappa chain V-V region L6-like4101591203101591689Rat
9102747LOC103692159Ig kappa chain V-V region L6-like4101989144101989630Rat
9301353LOC103692160Ig kappa chain V-V region L6-like4101996485101996971Rat
9113781LOC103690612uncharacterized LOC1036906124102059148102069379Rat
9439280LOC103692161uncharacterized LOC1036921614102135596102136094Rat
9330732LOC103690609NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene4102426173102426639Rat
11052016LOC102551948Ig kappa chain V-II region RPMI 6410-like4102536200102537176Rat
1561722RGD1561722similar to immunoglobulin light chain4102643914102644773Rat
11051993LOC102557466Ig kappa chain V-II region 26-10-like4102970365102974615Rat
11052029LOC102552751mucin-2-like4103015617103024899Rat
11465118LOC108350816Ig kappa chain V-II region RPMI 6410-like4103211049103212025Rat
1586033LOC500205similar to polypyrimidine tract binding protein 1 isoform b4104020045104021841Rat
9215783LOC103692162uncharacterized LOC1036921624104053246104086200Rat
11472949LOC108350866uncharacterized LOC1083508664104301152104303423Rat
1586032LOC500206similar to src homology 2 domain-containing transforming protein C14104310988104312286Rat
6500228LOC100910130protein FAM50A-like4104949605104956709Rat
9348276LOC103692163uncharacterized LOC1036921634105037379105048228Rat
6576138Trnas-gcutransfer RNA serine (anticodon GCU)4105177093105177174Rat
11468430Trnas-gcu6transfer RNA serine (anticodon GCU) 64105177093105177174Rat
1586002LOC502848similar to cactin CG1676-PA4105218227105219987Rat
2320685LOC100361176solute carrier family 25, member 394105707513105708605Rat
1585901LOC679688hypothetical protein LOC6796884105924927105939707Rat
7640293LOC102554402high mobility group protein B1-like4106076155106076798Rat
11051999LOC684133Ig kappa chain V-V region HP 123E6-like4106352500106362103Rat
2316392Vom1r-ps76vomeronasal 1 receptor pseudogene 764106871463106872247Rat
2320349LOC100361316hypothetical LOC1003613164106982479106983306Rat
11474954LOC108350867igE-binding protein-like4107133757107138178Rat
11402703LOC10835081760S ribosomal protein L27a-like4107330018107340567Rat
1584754LOC679788similar to ribosomal protein L64107442942107446479Rat
1305060Ctnna2catenin alpha 24107880611109042724Rat
1585921LRRTM1leucine rich repeat transmembrane neuronal 14108300927108316373Rat
11518322LOC108350841uncharacterized LOC1083508414108471612108495151Rat
1583643LOC679846hypothetical protein LOC6798464109050643109142960Rat
11385872LOC108350868glyceraldehyde-3-phosphate dehydrogenase pseudogene4109222968109223956Rat
3254Reg3bregenerating family member 3 beta4109467272109470510Rat
2319874LOC100361595hypothetical LOC1003615954109473140109475570Rat
621401Reg3aregenerating islet-derived 3 alpha4109477893109480659Rat
3552Reg1aregenerating family member 1 alpha4109497962109500626Rat
7688358LOC102556035uncharacterized LOC1025560354109521653109546592Rat
3256Reg3gregenerating family member 3 gamma4109529679109532234Rat
7552576LOC102546411syntaxin-binding protein 3-like4109654109109658999Rat
7708743LOC102556090uncharacterized LOC1025560904109675683109681109Rat
1560707Lrrtm4leucine rich repeat transmembrane neuronal 44110699577111497643Rat
11394131LOC108350843uncharacterized LOC1083508434111213643111243451Rat
11492979LOC108350842uncharacterized LOC1083508424111258784111413055Rat
7538165LOC102549600uncharacterized LOC1025496004111434832111444699Rat
1586028LOC500220similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)4111506069111508337Rat
1595483LOC680141hypothetical protein LOC6801414111566218111566807Rat
1586001LOC502850similar to mannose-6-phosphate receptor binding protein 14111929956111931270Rat
1594207LOC680224similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2)4112357036112357666Rat
6493044LOC100911370uncharacterized LOC1009113704112641827112645315Rat
1304792Gcfc2GC-rich sequence DNA-binding factor 24112662556112700505Rat
1587381Mrpl19mitochondrial ribosomal protein L194112703041112707270Rat
1559797Eva1aeva-1 homolog A, regulator of programmed cell death4112714023112823659Rat
7719052LOC102547556uncharacterized LOC1025475564112739237112759385Rat
7520921LOC102547617peroxiredoxin-6-like4112864026112884722Rat
6491861Rps27a-ps17ribosomal protein S27a, pseudogene 174113222490113223031Rat
3811Tacr1tachykinin receptor 14113247236113416139Rat
1307793Pole4DNA polymerase epsilon 4, accessory subunit4113491644113497455Rat
7711844LOC102547728uncharacterized LOC1025477284113497559113502453Rat
2797Hk2hexokinase 24113559396113609897Rat
1592965Rps27a-ps18ribosomal protein S27a, pseudogene 184113679590113680131Rat
3658Sema4fssemaphorin 4F4113738225113764532Rat
1563842M1apmeiosis 1 associated protein4113772716113864171Rat
1596846LOC680041similar to 40S ribosomal protein S254113800635113801094Rat
7638586LOC10254916260S ribosomal protein L9-like4113808078113808639Rat
1309499Dok1docking protein 14113864211113866695Rat
1311011Loxl3lysyl oxidase-like 34113866782113883713Rat
1308906Htra2HtrA serine peptidase 24113883671113886833Rat
1591777Aup1AUP1, lipid droplet regulating VLDL assembly factor4113887030113890103Rat
1591766Dqx1DEAQ box RNA-dependent ATPase 14113890201113899355Rat
1549782Pcgf1polycomb group ring finger 14113911129113913718Rat
1561172Lbx2ladybird homeobox 24113918680113920565Rat
1561779Ccdc142coiled-coil domain containing 1424113933466113941297Rat
1306709Mrpl53mitochondrial ribosomal protein L534113942037113942927Rat
2322824LOC100363523hypothetical LOC1003635234113943994113945047Rat
69240Mogsmannosyl-oligosaccharide glucosidase4113948328113951731Rat
1304961Wbp1WW domain binding protein 14113951873113954272Rat
1562258Ino80bINO80 complex subunit B4113954612113957774Rat
11518313LOC108350719uncharacterized LOC1083507194113966643113969597Rat
9129186LOC103692165rhotekin4113967384113984636Rat
9477816LOC103692166WD repeat-containing protein 544113984754113988487Rat
7631689LOC10255319460S ribosomal protein L7a-like4114042424114043224Rat
9337606LOC103692182ATP-dependent RNA helicase DQX1-like4114747607114765200Rat
1595506Tlx2T-cell leukemia homeobox 24114766401114768243Rat
9188290LOC103692167polycomb group RING finger protein 14114776680114779447Rat
9451642LOC103692168transcription factor LBX24114781754114786299Rat
9266814LOC103692170coiled-coil domain-containing protein 1424114799194114807025Rat
9457461LOC10369216939S ribosomal protein L53, mitochondrial4114807495114808659Rat
9080732LOC10369218360S ribosomal protein L23 pseudogene4114809722114810775Rat
9236907LOC103692171mannosyl-oligosaccharide glucosidase4114813988114817463Rat
9309531LOC103692173WW domain-binding protein 14114817601114819959Rat
9421107NEWGENE_1562258INO80 complex subunit B4114819232114823838Rat
11449712LOC108350720uncharacterized LOC1083507204114832712114835666Rat
727874Rtknrhotekin4114833453114850705Rat
1561494Wdr54WD repeat domain 544114847722114871989Rat
1566019LOC500227hypothetical gene supported by BC0794244114854449114860678Rat
62038Dctn1dynactin subunit 14114876770114896567Rat
7718040LOC102548304uncharacterized LOC1025483044114881322114885927Rat
1303009Slc4a5solute carrier family 4 member 54114918488115002290Rat
9126671LOC103692174uncharacterized LOC1036921744114979130114987846Rat
1311313Mthfd2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase4115004433115015965Rat
1307014Mob1aMOB kinase activator 1A4115024927115041904Rat
1305975Bola3bolA family member 34115046693115056140Rat
1590584Tet3tet methylcytosine dioxygenase 34115060702115160800Rat
7650908LOC102548361uncharacterized LOC1025483614115143413115154202Rat
1304799Dguokdeoxyguanosine kinase4115180433115208061Rat
2027Actg2actin gamma 2, smooth muscle4115215160115239746Rat
619963StambpStam binding protein4115249343115277340Rat
621062Clec4fC-type lectin domain family 4, member F4115322300115332021Rat
1565913Cd207CD207 molecule4115333124115355034Rat
9389444LOC103692184glyceraldehyde-3-phosphate dehydrogenase pseudogene4115355207115388533Rat
11402107LOC108350818uncharacterized LOC1083508184115379134115386903Rat
621133Vax2ventral anterior homeobox 24115388839115412515Rat
11488278LOC108350721uncharacterized LOC1083507214115404314115408911Rat
1310619Atp6v1b1ATPase H+ transporting V1 subunit B14115417100115435754Rat
1561200Ankrd53ankyrin repeat domain 534115439325115447995Rat
1305851Tex261testis expressed 2614115446830115454035Rat
11437638LOC10835072260S ribosomal protein L27 pseudogene4115462918115473665Rat
7729408LOC10255425660S ribosomal protein L27-like4115471341115472967Rat
1305057NagkN-acetylglucosamine kinase4115473848115485027Rat
1307930Paip2bpoly(A) binding protein interacting protein 2B4115484676115516307Rat
1309746Zfp638zinc finger protein 6384115555185115690272Rat
1586000LOC502853similar to 40S ribosomal protein S15 (RIG protein)4115572975115573488Rat
1311023Dysfdysferlin4115700942115901873Rat
9122976LOC103692175uncharacterized LOC1036921754115953874115976638Rat
11421296LOC10835086960S ribosomal protein L31 pseudogene4116132266116132772Rat
631379Cyp26b1cytochrome P450, family 26, subfamily b, polypeptide 14116261796116278615Rat
1560638Exoc6bexocyst complex component 6B4116314695116786466Rat
1585860LOC680929similar to serine/threonine kinase4116805256116806586Rat
7581904LOC102554508uncharacterized LOC1025545084116831236116839280Rat
7688339LOC102554699uncharacterized LOC1025546994116857807116872666Rat
11435431LOC108350724sperm motility kinase X-like4116862310116882056Rat
11472036LOC108350723UPF0587 protein C1orf123 homolog pseudogene4116869145116876378Rat
7524941LOC102554796uncharacterized LOC1025547964116883169116904635Rat
3753Sprsepiapterin reductase4116912343116916073Rat
1560795RGD1560795similar to Sepiapterin reductase (SPR)4116933277116936466Rat
1564002Emx1empty spiracles homeobox 14116967646116984136Rat
628706Sfxn5sideroflexin 54116995238117111548Rat
1592069Rab11fip5RAB11 family interacting protein 54117113067117154495Rat
1584703LOC681041similar to Argininosuccinate synthase (Citrulline--aspartate ligase)4117158492117172731Rat
1562910Notonotochord homeobox4117206355117210856Rat
1309153Smyd5SMYD family member 54117215064117229873Rat
1583112Pradc1protease-associated domain containing 14117230523117235496Rat
1306422Cct7chaperonin containing TCP1 subunit 74117235023117252265Rat
1566130Fbxo41F-box protein 414117255143117285228Rat
2546Egr4early growth response 44117293620117296082Rat
1311590Alms1ALMS1, centrosome and basal body associated protein4117371544117472310Rat
9142253LOC103692181nuclease-sensitive element-binding protein 1 pseudogene4117379561117380587Rat
9128058LOC103692176uncharacterized LOC1036921764117417914117422642Rat
621607Nat8f3N-acetyltransferase 8 (GCN5-related) family member 34117488089117492315Rat
621610Nat8f5N-acetyltransferase 8 (GCN5-related) family member 54117506731117531480Rat
1586026LOC500236similar to elastin microfibril interfacer 14117508795117512811Rat
621609Nat8N-acetyltransferase 84117525963117527443Rat
2324329LOC100362629camello-like 44117550582117552858Rat
6496154LOC100910829probable N-acetyltransferase CML2-like4117566557117569126Rat
7567030LOC102556148probable N-acetyltransferase CML2-like4117572665117578340Rat
621606Nat8f1N-acetyltransferase 8 (GCN5-related) family member 14117582779117589464Rat
1309786TprkbTp53rk binding protein4117589527117604481Rat
621605Nat8bN-acetyltransferase 8B4117606022117607366Rat
1307038Dusp11dual specificity phosphatase 114117617640117631674Rat
7547913LOC102549328uncharacterized LOC1025493284117649961117663174Rat
1564754Figlafolliculogenesis specific bHLH transcription factor4117679256117683618Rat
2042Add2adducin 24117691294117887556Rat
7712970LOC102549703uncharacterized LOC1025497034117733588117745562Rat
1561619Nat8f2N-acetyltransferase 8 (GCN5-related) family member 24117749538117752107Rat
7636572Nat8f4N-acetyltransferase 8 (GCN5-related) family member 44117755646117760096Rat
9097619LOC103690120probable N-acetyltransferase CML14117766954117772428Rat
9395731LOC103690067EKC/KEOPS complex subunit Tprkb4117772510117787465Rat
9150396LOC103690139probable N-acetyltransferase CML64117788998117793806Rat
9168966LOC103690006RNA/RNP complex-1-interacting phosphatase4117797735117814732Rat
9120810LOC103692177uncharacterized LOC1036921774117832945117839060Rat
3849Tgfatransforming growth factor alpha4117961877118045923Rat
11502286LOC108350725uncharacterized LOC1083507254118125178118130525Rat
6486422LOC100912595katanin p80 WD40-containing subunit B1-like4118134312118135193Rat
1596714LOC681376similar to katanin p80 (WD40-containing) subunit B 14118146585118147466Rat
1304825Fam136afamily with sequence similarity 136, member A4118160147118166062Rat
1584713Snrpgsmall nuclear ribonucleoprotein polypeptide G4118167267118174846Rat
628652Pcyox1prenylcysteine oxidase 14118187133118198029Rat
11508600Trnag-ccc4transfer RNA glycine (anticodon CCC) 44118207496118207566Rat
1305742Tia1TIA1 cytotoxic granule-associated RNA binding protein4118207845118238246Rat
1306746RGD1306746similar to Hypothetical protein MGC255294118240681118271771Rat
7589793LOC102554318uncharacterized LOC1025543184118314971118320831Rat
1561319Pcbp1poly(rC) binding protein 14118327185118329223Rat
7500259LOC102554481uncharacterized LOC1025544814118330044118340122Rat
1584384LOC684976hypothetical protein LOC6849764118341934118342930Rat
7667063LOC102554372uncharacterized LOC1025543724118373031118385223Rat
1560859Asprv1aspartic peptidase, retroviral-like 14118431755118433286Rat
1564525Mxd1max dimerization protein 14118451752118472150Rat
1310925Snrnp27small nuclear ribonucleoprotein U4/U6.U5 subunit 274118478075118487633Rat
1359265Gmcl1germ cell-less 1, spermatogenesis associated4118494997118534301Rat
621171Anxa4annexin A44118538775118595591Rat
9276610LOC103692178uncharacterized LOC1036921784118599778118632286Rat
1305520Aak1AP2 associated kinase 14118653851118806796Rat
2322888LOC100360057ribosomal protein L22-like4118705191118705687Rat
1307823Nfu1NFU1 iron-sulfur cluster scaffold4118814284118834955Rat
1549703Gfpt1glutamine fructose-6-phosphate transaminase 14118852046118901583Rat
7640703LOC102554877uncharacterized LOC1025548774118885395118889434Rat
1307144Antxr1ANTXR cell adhesion molecule 14118946267119131202Rat
11504247LOC108350726uncharacterized LOC1083507264118988428118991398Rat
1311934Gkn2gastrokine 24119131255119177329Rat
735014Gkn1gastrokine 14119143070119148358Rat
1597754Gkn3gastrokine 34119181970119188356Rat
7692651LOC102554941uncharacterized LOC1025549414119188353119194465Rat
1562986Bmp10bone morphogenetic protein 104119224906119230534Rat
1562105Arhgap25Rho GTPase activating protein 254119249682119327822Rat
708443Prokr1prokineticin receptor 14119375790119386551Rat
708395Vom1r101vomeronasal 1 receptor 1014119398004119400770Rat
708384Vom1r102vomeronasal 1 receptor 1024119465253119466286Rat
1565557Aplfaprataxin and PNKP like factor4119514822119568764Rat
2323785Cfap92cilia and flagella associated protein 924119572669119626852Rat
6497663LOC100910604uncharacterized LOC1009106044119632943119633551Rat
1596494Efcc1EF-hand and coiled-coil domain containing 14119633214119663081Rat
1561601Gp9glycoprotein IX (platelet)4119680671119682006Rat
1565300Rab43RAB43, member RAS oncogene family4119695012119714490Rat
1307688Isy1ISY1 splicing factor homolog4119721659119742349Rat
621807CnbpCCHC-type zinc finger, nucleic acid binding protein4119747890119756787Rat
2323735LOC100362958hypothetical LOC1003629584119764433119765427Rat
9124640LOC10369217960S ribosomal protein L34 pseudogene4119810755119811105Rat
1565292Copg1COPI coat complex subunit gamma 14119815041119840997Rat
1559800Hmces5-hydroxymethylcytosine binding, ES cell specific4119841088119864115Rat
11508794LOC108350727uncharacterized LOC1083507274119865784119877033Rat
1565596H1f10H1.10 linker histone4119889016119892661Rat
7650153LOC102552138uncharacterized LOC1025521384119895653119910825Rat
61908Rab7aRAB7A, member RAS oncogene family4119910461119963065Rat
3594Rpn1ribophorin I4119997232120018687Rat
1583218LOC685085similar to 40S ribosomal protein S254120040765120041256Rat
9252280LOC103692180uncharacterized LOC1036921804120054538120060839Rat
7562079LOC102554068uncharacterized LOC1025540684120064813120074394Rat
2664Gata2GATA binding protein 24120129028120142490Rat
1561981Dnajb8DnaJ heat shock protein family (Hsp40) member B84120156640120159708Rat
11455017LOC108350728uncharacterized LOC1083507284120163047120164389Rat
1562716Tcp1-ps1t-complex protein 1, pseudogene 14120180605120182231Rat
1560552Eefseceukaryotic elongation factor, selenocysteine-tRNA-specific4120194335120390203Rat
1592633LOC685514similar to ribosomal protein L364120403170120403551Rat
6493463LOC10091133740S ribosomal protein S25-like4120407800120408290Rat
68373Ruvbl1RuvB-like AAA ATPase 14120411917120447458Rat
6493053LOC10091137140S ribosomal protein S25-like4120413647120414138Rat
68321Sec61a1SEC61 translocon subunit alpha 14120453577120467932Rat
1585999Kbtbd12kelch repeat and BTB domain containing 124120492541120567755Rat
71039Mgllmonoglyceride lipase4120671436120773458Rat
7609272LOC102554878uncharacterized LOC1025548784120750833120752329Rat
1359363Abtb1ankyrin repeat and BTB domain containing 14120778580120784807Rat
1305815Podxl2podocalyxin-like 24120785494120817335Rat
1305577Mcm2minichromosome maintenance complex component 24120825699120840221Rat
620858Tpra1transmembrane protein adipocyte associated 14120843374120854534Rat
7696532LOC102554942uncharacterized LOC1025549424120881995120934151Rat
7591615LOC102555035uncharacterized LOC1025550354120944213120958941Rat
7550029LOC102555094uncharacterized LOC1025550944120993623120996241Rat
1591392Prr20eproline rich 20E4121040810121053910Rat
1560871Plxna1plexin A14121217658121262697Rat
1304561Chchd6coiled-coil-helix-coiled-coil-helix domain containing 64121340952121565222Rat
11431714LOC108350729glyceraldehyde-3-phosphate dehydrogenase pseudogene4121439306121440757Rat
1308363Txnrd3thioredoxin reductase 34121612332121650543Rat
9087191LOC103692185uncharacterized LOC1036921854121630814121632736Rat
1585998LOC502860hypothetical LOC5028604121658524121659443Rat
708509Vom1r90vomeronasal 1 receptor 904121675261121684264Rat
2323419LOC100363221hypothetical LOC1003632214121677926121679555Rat
7512196LOC102547820uncharacterized LOC1025478204121701430121706862Rat
1590235LOC685733similar to vomeronasal V1r-type receptor V1rb64121703480121704364Rat
1564573Vom1r92vomeronasal 1 receptor 924121758942121761699Rat
1549740Vom1r93vomeronasal 1 receptor 934121771681121779354Rat
1359098Vom1r94vomeronasal 1 receptor 944121810559121811539Rat
1359401Vom1r95vomeronasal 1 receptor 954121821837121822781Rat
2316391Vom1r-ps77vomeronasal 1 receptor pseudogene 774121848074121848968Rat
1549781Vom1r96vomeronasal 1 receptor 964121870699121871658Rat
708391Vom1r97vomeronasal 1 receptor 974121898248121900419Rat
2316390Vom1r-ps78vomeronasal 1 receptor pseudogene 784121906592121907419Rat
1549694Vom1r98vomeronasal 1 receptor 984121912352121913296Rat
2316389Vom1r-ps79vomeronasal 1 receptor pseudogene 794121931315121932132Rat
2316388Vom1r-ps80vomeronasal 1 receptor pseudogene 804121932963121933127Rat
1589006Vom1r99vomeronasal 1 receptor 994121968622121969446Rat
1549727Vom1r100vomeronasal 1 receptor 1004122005560122009301Rat
2316387Vom1r-ps81vomeronasal 1 receptor pseudogene 814122045600122046503Rat
2316386Vom1r-ps82vomeronasal 1 receptor pseudogene 824122055101122056097Rat
2316385Vom1r-ps83vomeronasal 1 receptor pseudogene 834122067831122068733Rat
2316384Vom1r-ps84vomeronasal 1 receptor pseudogene 844122072934122073845Rat
2316383Vom1r-ps85vomeronasal 1 receptor pseudogene 854122085455122086053Rat
2316408Vom1r103vomeronasal 1 receptor 1034122124451122131712Rat
708382Vom1r105vomeronasal 1 receptor 1054122124451122131893Rat
1587829Vom1r104vomeronasal 1 receptor 1044122169765122170730Rat
2316382Vom1r-ps86vomeronasal 1 receptor pseudogene 864122185642122186571Rat
1587811LOC685964hypothetical protein LOC6859644122217505122221999Rat
1562825Chst13carbohydrate sulfotransferase 134122223846122244848Rat
1587777Uroc1urocanate hydratase 14122244744122276357Rat
1561296ZxdcZXD family zinc finger C4122282119122314251Rat
1305768Cfap100cilia and flagella associated protein 1004122314462122338862Rat
70918Klf15Kruppel-like factor 154122364688122377690Rat
11435432LOC108350819uncharacterized LOC1083508194122505378122627742Rat
69339Nup210nucleoporin 2104122643952122741322Rat
9129755LOC103692186uncharacterized LOC1036921864122717433122718470Rat
1311706Hdac11histone deacetylase 114122781095122798355Rat
628685Fbln2fibulin 24122835237122895127Rat
69079Wnt7aWnt family member 7A4122994425123040609Rat
2316381Vom1r-ps87vomeronasal 1 receptor pseudogene 874123062299123062925Rat
1310746Chchd4coiled-coil-helix-coiled-coil-helix domain containing 44123108924123118186Rat
1549711Tmem43transmembrane protein 434123118468123133610Rat
1305760XpcXPC complex subunit, DNA damage recognition and repair factor4123134457123161985Rat
1305971Lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated4123162086123168330Rat
11469674LOC108350730uncharacterized LOC1083507304123272132123294291Rat
9140318LOC103690748uncharacterized LOC1036907484123285245123286792Rat
1596313Iqsec1IQ motif and Sec7 domain ArfGEF 14123400717123454656Rat
1589573Slc41a3solute carrier family 41, member 34123467552123513447Rat
621294Aldh1l1aldehyde dehydrogenase 1 family, member L14123516553123564067Rat
11453727LOC108350870glyceraldehyde-3-phosphate dehydrogenase pseudogene4123573149123574032Rat
621668Grip2glutamate receptor interacting protein 24123585184123636040Rat
61912Slc6a6solute carrier family 6 member 64123638619123713469Rat
7539827LOC102548902uncharacterized LOC1025489024123703946123738341Rat
1305225Ccdc174coiled-coil domain containing 1744123760708123787529Rat
11410861LOC10835080140S ribosomal protein S11-like4123764849123765341Rat
1560289RGD1560289similar to chromosome 3 open reading frame 204123790516123839149Rat
7553480LOC102554857uncharacterized LOC1025548574123858182123864108Rat
1305589Fgd5FYVE, RhoGEF and PH domain containing 54123865557123962904Rat
3201Nr2c2nuclear receptor subfamily 2, group C, member 24124005287124030349Rat
1308770Mrps25mitochondrial ribosomal protein S254124036654124048417Rat
1305397Rbsnrabenosyn, RAB effector4124050559124080919Rat
9301889LOC103692187uncharacterized LOC1036921874124080874124090409Rat
3903Trhthyrotropin releasing hormone4124110716124113242Rat
1306723Prickle2prickle planar cell polarity protein 24124238167124584176Rat
9377556LOC103692188uncharacterized LOC1036921884124537165124539501Rat
1306889Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 94124660254124860997Rat
7661237LOC102554570uncharacterized LOC1025545704124700015124752686Rat
7590189LOC102555978uncharacterized LOC1025559784125044157125133795Rat
7601859LOC102555860uncharacterized LOC1025558604125147311125164319Rat
7514013LOC102556061uncharacterized LOC1025560614125191567125247001Rat
9070006LOC103692189uncharacterized LOC1036921894125604132125608677Rat
9285430LOC103692190uncharacterized LOC1036921904125644800125657336Rat
1586441LOC688659similar to acidic ribosomal phosphoprotein P04125658901125660013Rat
1586025Magi1membrane associated guanylate kinase, WW and PDZ domain containing 14125684816126300013Rat
7537443LOC102556496uncharacterized LOC1025564964125688257125697591Rat
7545388LOC102556397gamma-aminobutyric acid receptor-associated protein-like4126015048126016219Rat
2319160LOC100361920dynein light chain 1-like4126070800126074935Rat
9075742LOC103692191uncharacterized LOC1036921914126220395126226449Rat
1585997LOC502863similar to transcription elongation factor B (SIII), polypeptide 24126305326126305689Rat
2320195LOC100364870hypothetical LOC1003648704126369560126410240Rat
2323903LOC100362876hypothetical LOC1003628764126515242126520847Rat
7707413LOC10254641260S ribosomal protein L23a-like4126520330126520871Rat
1308811Slc25a26solute carrier family 25 member 264126522335126615402Rat
1306788Lrig1leucine-rich repeats and immunoglobulin-like domains 14126615998126717434Rat
9101484LOC103692192uncharacterized LOC1036921924126632734126635384Rat
11484082LOC108350731uncharacterized LOC1083507314126806910126876502Rat
11504573LOC108350732uncharacterized LOC1083507324126884411126899044Rat
11357165LOC108350733uncharacterized LOC1083507334126901623126927870Rat
2318954LOC100362026cytochrome c oxidase, subunit VIc-like4126905378126905672Rat
11398915Trnal-aag2transfer RNA leucine (anticodon AAG) 24126941939126942020Rat
11432238LOC108350734uncharacterized LOC1083507344126953162126981104Rat
1585996LOC502864similar to proteasome beta 3 subunit4127025024127028562Rat
1563166Kbtbd8kelch repeat and BTB domain containing 84127164728127177537Rat
1586024LOC500263similar to heterogeneous nuclear ribonucleoprotein A34127193389127194243Rat
1583000LOC688907similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)4127328444127334012Rat
1305008Suclg2succinate-CoA ligase GDP-forming subunit beta4127552100127824970Rat
9414372LOC103692194uncharacterized LOC1036921944127561439127562904Rat
9215796LOC103692193uncharacterized LOC1036921934127796666127800972Rat
1564292RGD1564292similar to Nucleolar protein 14127966113127968435Rat
11412448LOC108350820ribosome biogenesis regulatory protein homolog4128095623128098790Rat
7508836LOC102549269uncharacterized LOC1025492694128152877128221659Rat
11081189LOC500265nucleoporin 50-like4128264112128267776Rat
7643253LOC102550115ribosome biogenesis regulatory protein homolog4128659271128662434Rat
1563030Tafa1TAFA chemokine like family member 14128818468128942088Rat
1597443Tafa4TAFA chemokine like family member 44129196658129430438Rat
9340208LOC103692195uncharacterized LOC1036921954129318247129319649Rat
1359357EogtEGF domain specific O-linked N-acetylglucosamine transferase4129477779129515435Rat
620551Tmf1TATA element modulatory factor 14129521986129546024Rat
621084Uba3ubiquitin-like modifier activating enzyme 34129548411129569550Rat
708572Arl6ip5ADP-ribosylation factor like GTPase 6 interacting protein 54129574363129598240Rat
1564924Lmod3leiomodin 34129604378129619136Rat
620172Frmd4bFERM domain containing 4B4129658137129984735Rat
11470597LOC108350736uncharacterized LOC1083507364129680778129690167Rat
11494882LOC108350735uncharacterized LOC1083507354129863376129880065Rat
9139503LOC10369219660S ribosomal protein L23a pseudogene4129896833129898054Rat
11400915LOC108350821glyceraldehyde-3-phosphate dehydrogenase pseudogene4130078501130082491Rat
11455689LOC108350871uncharacterized LOC1083508714130118654130152487Rat
3092Mitfmelanocyte inducing transcription factor4130172484130425496Rat
11400782LOC108350872uncharacterized LOC1083508724130537776130548325Rat
2323009Mdfic2MyoD family inhibitor domain containing 24130649564130751397Rat
1308669Foxp1forkhead box P14131362178131963466Rat
7669867LOC102555037uncharacterized LOC1025550374131990634131993482Rat
1586185Eif4e3eukaryotic translation initiation factor 4E family member 34132068581132111092Rat
71067Gpr27G protein-coupled receptor 274132137793132138926Rat
1561565Ier3ip1immediate early response 3 interacting protein 14132140802132152059Rat
620280Prok2prokineticin 24132157556132171244Rat
7507912LOC102555186uncharacterized LOC1025551864132290011132294070Rat
1560513RGD1560513similar to macrophage migration inhibitory factor4132295929132298552Rat
9229745LOC103692198uncharacterized LOC1036921984132330276132374231Rat
9307839LOC103692197uncharacterized LOC1036921974132430947132439747Rat
9261195LOC103692199uncharacterized LOC1036921994132530834132579765Rat
11380835LOC108350738uncharacterized LOC1083507384132608924132610834Rat
11518111LOC108350737uncharacterized LOC1083507374132615974132624020Rat
1307077RybpRING1 and YY1 binding protein4132689623132740823Rat
7643619LOC102555246uncharacterized LOC1025552464133008974133013814Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133037515133127183Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133131711133133170Rat
1593481LOC689383similar to cytoplasmic beta-actin4133137034133139247Rat
1586482Gxylt2glucoside xylosyltransferase 24133179185133263493Rat
1307312Ppp4r2protein phosphatase 4, regulatory subunit 24133285552133323755Rat
9272263LOC103692200uncharacterized LOC1036922004133406466133413628Rat
7731047LOC102555697uncharacterized LOC1025556974133406466133469099Rat
11480110LOC108350739uncharacterized LOC1083507394133415250133420934Rat
1586603LOC686093similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34)4133523773133541592Rat
11385382LOC10835087360S ribosomal protein L17 pseudogene4133680324133680845Rat
9255243LOC103692201UPF0729 protein C18orf32 homolog4133680844133681086Rat
1592353LOC689407similar to smoothelin isoform a4133688739133690763Rat
1305250Pdzrn3PDZ domain containing RING finger 34133717139133951282Rat
11469179LOC108350740uncharacterized LOC1083507404134178846134183878Rat
1586021LOC500273similar to tubulin, alpha 8 like 34134290913134291859Rat
1592322LOC689440similar to 60S ribosomal protein L134134507143134512545Rat
3253Cntn3contactin 34134783671135159309Rat
11513147LOC108350822uncharacterized LOC1083508224135374528135384688Rat
7698712LOC102547280uncharacterized LOC1025472804135465906135470160Rat
7565639LOC102549329uncharacterized LOC1025493294135876685135891505Rat
1585995LOC502869similar to karyopherin (importin) alpha 24135948298135950166Rat
1586020LOC500277similar to Ras-GTPase-activating protein binding protein 1 (ATP-dependent DNA helicase VIII) (GAP SH3-domain binding protein 1) (G3BP-1) (HDH-VIII)4136078376136079997Rat
1560353RGD1560353similar to 60S ribosomal protein L134136124902136127166Rat
1563492RGD1563492similar to ATP-binding cassette, sub-family F (GCN20), member 24136226867136229249Rat
62008Cntn6contactin 64136512201136904355Rat
621361Cntn4contactin 44137785166138787527Rat
1586019LOC500279similar to Phosphoglycerate kinase 14138432885138434587Rat
70938Il5rainterleukin 5 receptor subunit alpha4138796165138834164Rat
1308857Trnt1tRNA nucleotidyl transferase 14138855497138869217Rat
1310533Crbncereblon4138864910138885786Rat
11479425LOC108348222GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase pseudogene4139024096139026202Rat
1585994LOC502870similar to B0361.84139024096139165637Rat
1589884LOC689694similar to 40S ribosomal protein S7 (S8)4139537980139538525Rat
1564145Lrrn1leucine rich repeat neuronal 14139633310139679730Rat
11408865LOC108350741uncharacterized LOC1083507414139683245139690535Rat
6487745LOC100912325actin, cytoplasmic 2-like4139990873139991923Rat
1565882SetmarSET domain and mariner transposase fusion gene4140092346140104495Rat
1309939Sumf1sulfatase modifying factor 14140139017140220482Rat
2933Itpr1inositol 1,4,5-trisphosphate receptor, type 14140247297140580749Rat
7723051LOC102547466uncharacterized LOC1025474664140564422140594171Rat
7692497LOC102547402uncharacterized LOC1025474024140620451140656139Rat
11461811LOC108350742uncharacterized LOC1083507424140656378140666835Rat
68439Bhlhe40basic helix-loop-helix family, member e404140703619140709319Rat
1562830Arl8bADP-ribosylation factor like GTPase 8B4140837745140881866Rat
1563633Edem1ER degradation enhancing alpha-mannosidase like protein 14140886644140918654Rat
11400916LOC108350874uncharacterized LOC1083508744141021819141023201Rat
1586018LOC500283similar to Proteasome 26S subunit subunit 4 ATPase CG5289-PA4141168128141169458Rat
11358358LOC108350743uncharacterized LOC1083507434141997425142006546Rat
619857Grm7glutamate metabotropic receptor 74142452616143368460Rat
9199378LOC103692202cyclin-dependent kinases regulatory subunit 2 pseudogene4142969739142970846Rat
11418581LOC108350844uncharacterized LOC1083508444143266215143272319Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10156D4Mit181854131532260131532452Ratregion
10157D4Wox171574131532286131532442Ratregion
10158D4Arb162514131532269131532519Ratregion
10513D4Arb63064117296483117296788Ratregion
10525D4Mit311244106590076106590199Ratregion
10560D4Mit1217949906697299067150Ratregion
10561D4Wox2014449906696599067108Ratregion
10562D4Arb2128049906682399067102Ratregion
11229D4Wox281374109496867109497003Ratregion
33933D4Mit161144127777294127777403Ratregion
33991D4Mit282204108876717108876936Ratregion
34001D4Mit171474132455408132455556Ratregion
34023D4Mit291364117051833117051946Ratregion
34106D4Mgh61654133202692133202830Ratregion
34174D4Mgh71434137666258137666428Ratregion
34174D4Mgh71434136351734136351904Ratregion
34256D4Mgh181244125884464125884552Ratregion
11381D4Mgh171374113247673113247809Ratregion
11381D4Mgh171374113100978113101114Ratregion
11383D4Mit231204113247687113247806Ratregion
11383D4Mit231204113100992113101111Ratregion
11409D4Wox181134118044882118044994Ratregion
11410D4Arb52474118044851118045097Ratregion
33696D4Mit151874111809356111809586Ratregion
36029D4Rat511704119538229119538396Ratregion
36043D4Rat491524117007421117007572Ratregion
36109D4Rat431474115054888115055023Ratregion
36175D4Rat531924122483467122483659Ratregion
36271D4Rat811424138199017138199153Ratregion
36368D4Mit324115394252115394402Ratregion
37214D4Rat1052284125765814125766052Ratregion
35262D4Rat791584129614905129615056Ratregion
35278D4Rat462994120400597120400898Ratregion
35310D4Rat451644119278131119278294Ratregion
35315D4Rat821364141127649141127791Ratregion
36898D4Rat801244129904890129905024Ratregion
37062D4Rat421424112748062112748200Ratregion
37100D4Rat522344125394610125394835Ratregion
37202D4Rat942144141586953141587133Ratregion
37850D4Rat1041514136908430136908581Ratregion
37868D4Rat1241464115141626115141776Ratregion
36508D4Rat482134123478354123478566Ratregion
36725D4Rat781604115764185115764327Ratregion
34902D4Rat551754125671525125671711Ratregion
35003D4Rat501364117559628117559763Ratregion
35046D4Rat583624133776133133776479Ratregion
35070D4Rat571884132136266132136446Ratregion
35635D4Rat541714119546804119546974Ratregion
39634D4Rat1852364124432940124433159Ratregion
39768D4Rat1831384122848831122848960Ratregion
39916D4Rat1752114101092546101092756Ratregion
39930D4Rat1881334126739594126739730Ratregion
39974D4Rat2162234115739605115739845Ratregion
38074D4Rat1212324131238668131238897Ratregion
38344D4Rat1061544115372758115372927Ratregion
38360D4Rat1201864115997547115997732Ratregion
40636D4Rat1802464114990330114990579Ratregion
40642D4Rat1952154140425986140426293Ratregion
40642D4Rat1952154140425986140426192Ratregion
38412D4Rat882394129783241129783479Ratregion
38458D4Rat951204128847176128847297Ratregion
38682D4Rat972234108186335108186553Ratregion
38748D4Rat1092014113728236113728420Ratregion
39990D4Rat1772014110635261110635449Ratregion
40014D4Rat2332244105383808105384025Ratregion
38866D4Rat872094126541888126542088Ratregion
38998D4Rat922224129762437129762658Ratregion
39158D4Rat11414120174149120174277Ratregion
39162D4Rat1162344130297677130297914Ratregion
39528D4Rat1762044112807675112807890Ratregion
42152D4Arb223184123642406123642721Ratregion
42308D4Rat2901344116343664116343797Ratregion
42712D4Rat2342414122933728122933948Ratregion
42716D4Rat2732384131310159131310420Ratregion
42717D4Rat2722004127887545127887754Ratregion
42718D4Rat2352224132245957132246187Ratregion
42719D4Rat2371434133505086133505232Ratregion
42720D4Rat2742184138813963138814171Ratregion
42721D4Rat2382004138891009138891201Ratregion
42722D4Rat2393264139529020139529341Ratregion
41232D4Rat1821414119705414119705552Ratregion
41362D10Rat1691554132384348132384494Ratregion
41456D4Rat1791554115813010115813163Ratregion
41500D4Rat1961514140295371140295521Ratregion
41502D4Rat1871464122957934122958081Ratregion
42708D4Rat23220049963375999633958Ratregion
42709D4Rat2672304101402449101402679Ratregion
42710D4Rat2682434112785013112785248Ratregion
42711D4Rat2692294120611761120611972Ratregion
40878D4Rat1841034118283596118283708Ratregion
40974D4Rat1862014124489995124490209Ratregion
41594D4Rat1902564129571413129571686Ratregion
41796D4Rat2361364126751159126751301Ratregion
43823D4Got881344116110164116110297Ratregion
43825D4Got1491444116020347116020490Ratregion
43826D4Got851294118971019118971147Ratregion
43827D4Got841504119353594119353743Ratregion
43829D4Got832314120619002120619229Ratregion
43830D4Got1481564120400579120400737Ratregion
43831D4Got821174123467858123467974Ratregion
43832D4Got931604126337352126337511Ratregion
43833D4Wox21474126925735126925891Ratregion
43834D4Got982884130875205130875492Ratregion
43835D4Got941474128892772128892918Ratregion
43836D4Got95994129062632129062730Ratregion
43837D4Got150884129426207129426294Ratregion
43840D4Got1072934138114390138114682Ratregion
43845D4Got1171864143704850143705035Ratregion
43849D4Got116874143713247143713333Ratregion
43851D4Got1142154141707537141707751Ratregion
43853D4Wox11054135913868135913983Ratregion
43855D4Got1061534136827355136827507Ratregion
44796D10Got1171704108940816108940985Ratregion
60460D4Got791314103251553103251683Ratregion
60460D4Got791314102496542102496672Ratregion
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5064628BF3994621614129876550129876710Ratregion
5063058BF41022820149978648799786687Ratregion
5063088BF3983272474133322949133323195Ratregion
5066386AU0483872674125946874125947140Ratregion
5066414AU0483712474133505051133505297Ratregion
5063160BF3984202084116262924116263131Ratregion
5064804BE1085442024100225720100225921Ratregion
5061596BE1055681554124031646124031800Ratregion
5082111BF4096362064124775699124775904Ratregion
5086157BM3861001574100373892100374048Ratregion
5087056BM3877431564129603901129604056Ratregion
5087112AI5026301814132086377132086638Ratregion
5087128BM3878071764121862088121862263Ratregion
5087584PMC34520P13904100168615100169004Ratregion
5087809D6Wsu137e1954120018421120018615Ratregion
5088080Rab72374119959027119959263Ratregion
5089761AU0493472034111809396111809598Ratregion
5082919BF3904131534122805315122805467Ratregion
5088917AU0488461674104172308104172474Ratregion
5088149Wnt7a5474122995254122995800Ratregion
5088189AU0484202944134401151134401444Ratregion
5089277AU0490602844116603235116603518Ratregion
5089307AU0490781824115165814115165996Ratregion
5089397AU0491322164117727273117727488Ratregion
5088451AU0485771084125933718125933825Ratregion
5089525AU0492072654141923042141923306Ratregion
5089561AU0492281684120763239120763406Ratregion
5088911AU0488432984140366986140367283Ratregion
5089631AU0492702954119555431119555725Ratregion
5090639AU0498732454111399445111399689Ratregion
5084030AI17534816849973508199735248Ratregion
5081545AA9260991244116936185116936308Ratregion
5081545AA9260991244116912497116912620Ratregion
5084524AI1769422304117755825117756054Ratregion
5084524AI1769422304117572844117573073Ratregion
5084534AA9456802184129601616129601833Ratregion
5084700AI1032902084112638110112638317Ratregion
5090095AU0495471084104645430104645537Ratregion
5090207AU0496142064116354060116354265Ratregion
5084396AA7998471464119234280119234425Ratregion
5085022AI0089351814133873953133874133Ratregion
5087741Cnbp1694119747894119748062Ratregion
5087811D6Wsu157e1614100181457100181617Ratregion
5082221BI2742591684118944495118944661Ratregion
5082237BI2743651254119742585119742709Ratregion
5085579BQ2111052034115896101115896303Ratregion
5090681AU0498971884122265011122265198Ratregion
5080874RH1418332064123515584123515789Ratregion
5090425AU0497431764120632520120632695Ratregion
5090513AU0497962784108733001108733278Ratregion
5088723AU0487391164123186227123186342Ratregion
5088731AU0487461714131263052131263222Ratregion
5088899AU0488362484120302365120302612Ratregion
5081100RH1419652134123996473123996685Ratregion
5081358AA9238812124100222142100222353Ratregion
5090135AU0495702914126394580126394870Ratregion
5090161AU04958721849921771699217933Ratregion
5090215AU04961927349950750599507774Ratregion
5089075AU0489401464118582895118583040Ratregion
5082673BE1199791604122783971122784130Ratregion
5081020RH1419182094118451780118451988Ratregion
5084476AA8504811514127552196127552346Ratregion
5082753BF3900211234116637428116637550Ratregion
5081222RH1420352204122301196122301415Ratregion
5081346UniSTS:2261511824116973871116974052Ratregion
5083083BI2751072004124033446124033645Ratregion
5083233BG3803312314126217770126218000Ratregion
5083980AI2323511174118495673118495789Ratregion
5503014Loxl313564113882331113883686Ratregion
5503107CCT71064117249719117250363Ratregion
5503146RAB7A784119915841119916586Ratregion
5503585UniSTS:4646631164116274693116274808Ratregion
5507690Igk-V15704103524330103524899Ratregion
5507690Igk-V15704102290344102290913Ratregion
5504410PMC196074P22324100098954100099185Ratregion
5504662PMC33279P14604133137870133138319Ratregion
5504274D2S1554E2504118328190118328439Ratregion
5504652PMC327172P12814120125898120126178Ratregion
5504811ha210216974140787377140789073Ratregion
5504867ha27071884104527922104528109Ratregion
5504867ha27071884103809415103809602Ratregion
5505460Prok2664132157580132157645Ratregion
5505486G197171654132689601132689765Ratregion
5505229Aldh1l1684123542962123543029Ratregion
5505622UniSTS:48678214994132894870132896368Ratregion
5505626UniSTS:48763811344132137793132138926Ratregion
5505544D12S20449644120783497120784460Ratregion
5505786UniSTS:49324111344132137793132138926Ratregion
5505822UniSTS:49555010484121703393121704440Ratregion
5505935UniSTS:49661912814130390412130391692Ratregion
5506242TXP2087544121009392121010145Ratregion
5506473AFM342xc104130851566130852133Ratregion
5506533GRM7_13887684143367675143368442Ratregion
5506140UniSTS:498461704100413771100413840Ratregion
5506437UniSTS:4793056004115677852115678451Ratregion
5506445UniSTS:4803022074113247795113248001Ratregion
5506445UniSTS:4803022074113101100113101306Ratregion
5507047UniSTS:2242371814141253872141254052Ratregion
5507107UniSTS:2245851954119748534119748728Ratregion
5507057UniSTS:2242782054122675217122675421Ratregion
5499517stSG61060504109908599109908857Ratregion
5500581RH1360641464118228058118228203Ratregion
5499909UniSTS:2354952114123451852123452062Ratregion
5499911UniSTS:2354961374122855453122855589Ratregion
5500021UniSTS:2362041104119764829119764938Ratregion
5499649MARC_6321-6322:992007238:1914114895762114896173Ratregion
5501640UNH10423114123002020123002330Ratregion
5499839UniSTS:2349592354115487008115487242Ratregion
5499915UniSTS:2354822074117251483117252002Ratregion
5501035PMC124275P24704119911355119911824Ratregion
5501594RH369058854123156128123157012Ratregion
5504704PMC58532P12444120140086120140795Ratregion
5501534RH468973694129181679129182047Ratregion
5501562STS-Z4114013894113141406113142518Ratregion
5501622REN62H019764132645446132646421Ratregion
5501798MARC_12813-12814:999878148:11664115475833115476636Ratregion
5502030MARC_24177-24178:1033563974:165949941406799414725Ratregion
5502134MARC_5405-5406:996690354:1634125659077125659139Ratregion
5506895G474331484132224068132224215Ratregion
5502243AI3156818124117472498117473309Ratregion
5502409RH1247491514119748200119748350Ratregion
5502471RH124966844113888419113888502Ratregion
11565149D4Nirs22244119700040119700264Ratregion
11565154D4Nirs82084120086953120087161Ratregion
Position Markers

Flank 1: (D4Arb21)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0499,066,823 - 99,067,102NCBI
Rnor_5.04163,843,971 - 163,844,250UniSTS
RGSC_v3.44104,415,843 - 104,416,123RGD
RGSC_v3.44104,415,844 - 104,416,123UniSTS
RGSC_v3.14104,660,324 - 104,660,604RGD
Celera492,370,590 - 92,370,869UniSTS
Cytogenetic Map4q32UniSTS
Flank 2: (D4Arb24)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map4 RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43427793299067150Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)456092756101092756Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)456092756101092756Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458166424103166424Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)46043912799066957Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)460439127113416139Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)461708341113100992Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)461975371106975371Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)463938412108938412Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)471476518116476518Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)471476518116476518Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473786419132455556Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)475258970120258970Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)475258970120258970Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)476567036121567036Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)479555067124555067Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)479557856116916073Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481874073119546974Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)481959983152055009Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)484475257178931073Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)485794049129615056Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486312589146942261Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486312589147702403Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486438317168047091Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486532519131532519Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487136446132136446Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487136446132136446Rat
2317587Eae26Experimental allergic encephalomyelitis QTL 26nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)48977755299067150Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)494414208139414208Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494893247168046938Rat
8662350Eae35Experimental allergic encephalomyelitis QTL 356.2blood tumor necrosis factor amount (VT:0008552)inflammatory exudate tumor necrosis factor level (CMO:0001435)49850016499633958Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)499066823144066823Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)499066972110635449Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105277348150277348Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4105682594150682594Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4105971071168047091Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106347236151347236Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4108876717169215811Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109636356154636356Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109636356154636356Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4112807675157807675Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4115372758150038284Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4116726724157291438Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4117926139162926139Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4119705414146087100Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4120318422146087100Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120400597146942261Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4123111827168111827Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123478354168478354Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4123587009168587009Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4124442168169442168Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4125884464168047091Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4128602727173602727Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4131834282176834282Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4131864442176864442Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132455408168047091Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (VE) (CMO:0000132)4134917642179917642Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4136351734180689124Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4136908430182878540Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4137171018182171018Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia3


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia3  Collagen induced arthritis QTL 3    Type II Collagen induced arthritis QTL 3  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Cxcl12, Aqp1, Il17re, Il17rc as RA associated genes 2300074
qtl_gene 672 known and 251 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_map along with Aia3 and Pia5 is contained within chromosome 4 R2 subcongenic strain DA.PVG.1AV1-(D4Mgh17-D4Rat56) 629560