Cia3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia3 (Collagen induced arthritis QTL 3) Rattus norvegicus

Symbol: Cia3
Name: Collagen induced arthritis QTL 3
RGD ID: 61434
Previously known as: Type II Collagen induced arthritis QTL 3
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24103,194,656 - 148,194,656RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0499,066,823 - 144,066,823RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04163,843,971 - 208,843,971RGDRnor5.0
RGSC_v3.44104,415,843 - 149,415,843RGDRGSC3.4
RGSC_v3.14104,660,324 - 149,660,324RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Mapping and functional characterization of rat chromosome 4 regions that regulate arthritis models and phenotypes in congenic strains. Backdahl L, etal., Arthritis Rheum 2003 Feb;48(2):551-9.
2. Quantitative trait loci disposing for both experimental arthritis and encephalomyelitis in the DA rat; impact on severity of myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis and antibody isotype pattern. Dahlman I, etal., Eur J Immunol 1998 Jul;28(7):2188-96
3. Advanced intercross line mapping suggests that ncf1 (ean6) regulates severity in an animal model of guillain-barre syndrome. Huberle A, etal., J Immunol. 2009 Apr 1;182(7):4432-8.
4. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
5. Identification of rat susceptibility loci for adjuvant-oil-induced arthritis. Lorentzen JC, etal., Proc Natl Acad Sci U S A 1998 May 26;95(11):6383-7
6. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats. Remmers EF, etal., Nat Genet 1996 Sep;14(1):82-5
7. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
8. Genetic control of arthritis onset, severity and chronicity in a model for rheumatoid arthritis in rats. Vingsbo-Lundberg C, etal., Nat Genet 1998 Dec;20(4):401-4
9. Localization in rats of genetic loci regulating susceptibility to experimental erosive arthritis and related autoimmune diseases. Wilder RL, etal., Transplant Proc 1999 May;31(3):1585-8
10. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
11. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Oia2 maps to same region RGD:61087
Eau1 maps to same region RGD:61073
Aia3 maps to same region RGD:629560
Ean2 maps to same region RGD:2306769
Pia5 maps to same region RGD:61089
Aia5 maps to same region RGD:629560
Scwia1 maps to same region RGD:61064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2590Fabp1fatty acid binding protein 14103191015103194791Rat
1305105Smyd1SET and MYND domain containing 14103195330103252989Rat
7727476LOC102549052low molecular weight phosphotyrosine protein phosphatase-like4103247606103251384Rat
40934091Trnaa-agctransfer RNA alanine (anticodon AGC)4103258388103258469Rat
1306495Krcc1lysine-rich coiled-coil 14103261642103274672Rat
7647571Zmat1l1zinc finger, matrin-type 1 like 14103292937103297980Rat
2317Cd8bCD8 subunit beta4103312596103328523Rat
1587245Tuba1b-ps8tubulin, alpha 1B, pseudogene 84103340394103341605Rat
2316Cd8aCD8 subunit alpha4103365804103370041Rat
1309766Rmnd5arequired for meiotic nuclear division 5 homolog A4103375846103432890Rat
40952747Trnas-aga32transfer RNA serine (anticodon AGA) 324103396425103396498Rat
620586Rnf103ring finger protein 1034103526456103542529Rat
708556Chmp3charged multivesicular body protein 34103576453103622566Rat
708351Kdm3alysine demethylase 3A4103630907103675073Rat
1305230Reep1receptor accessory protein 14103746004103862347Rat
1307065Mrpl35mitochondrial ribosomal protein L354103865812103876687Rat
1310684Immtinner membrane mitochondrial protein4103880482103919116Rat
1565582Ptcd3Pentatricopeptide repeat domain 34103922440103957445Rat
41156854Snord94small nucleolar RNA, C/D box 944103924328103924464Rat
620824Polr1aRNA polymerase I subunit A4103950051104014022Rat
2319759Tmem94-ps1transmembrane protein 94, pseudogene 14104043649104046004Rat
41152181LOC120102169uncharacterized LOC1201021694104098343104105838Rat
7553872LOC102556495uncharacterized LOC1025564954104131807104134481Rat
620875St3gal5ST3 beta-galactoside alpha-2,3-sialyltransferase 54104134613104192558Rat
41176189LOC120102561U6 spliceosomal RNA4104156903104157009Rat
7524413LOC102546367uncharacterized LOC1025463674104166361104168839Rat
1561512Atoh8atonal bHLH transcription factor 84104259992104292168Rat
41062867LOC120102308uncharacterized LOC1201023084104292221104321842Rat
621700Sftpbsurfactant protein B4104359303104368439Rat
1308103Usp39ubiquitin specific peptidase 394104373948104406359Rat
1587471C4h2orf68similar to human chromosome 2 open reading frame 684104402553104408317Rat
619998Tmem150atransmembrane protein 150A4104410271104414630Rat
1359698Rnf181ring finger protein 1814104414586104421433Rat
620419Vamp5vesicle-associated membrane protein 54104423813104435059Rat
620421Vamp8vesicle-associated membrane protein 84104442383104452884Rat
68383Ggcxgamma-glutamyl carboxylase4104469737104485631Rat
619985Mat2amethionine adenosyltransferase 2A4104489877104495447Rat
11355186LOC108350864ATP synthase subunit g, mitochondrial pseudogene4104555149104555540Rat
1587427Sh2d6SH2 domain containing 64104566210104574176Rat
1311724Capgcapping actin protein, gelsolin like4104594743104611856Rat
41109258Trnap-agg74transfer RNA proline (anticodon AGG) 744104598962104599042Rat
1306408Elmod3ELMO domain containing 34104614665104653122Rat
628802Retsatretinol saturase4104653306104662069Rat
620445Tgoln2trans-golgi network protein 24104663356104671208Rat
7699711LOC102549526uncharacterized LOC1025495264104672363104687654Rat
1311671Tcf7l1transcription factor 7 like 14104680734104846086Rat
7562795LOC102549458uncharacterized LOC1025494584104767270104769717Rat
1591490Kcmf1potassium channel modulatory factor 14104888452104950234Rat
41358316LOC120102632small nucleolar RNA SNORA36 family4104895641104895763Rat
41116383LOC120102170thymosin beta-10-like4104962822104963289Rat
41083750LOC120102310uncharacterized LOC1201023104104988896104994531Rat
62022Tmsb10thymosin, beta 104105009959105011095Rat
41323307LOC120102777U4 spliceosomal RNA4105038037105038123Rat
621797Dnah6dynein, axonemal, heavy chain 64105064123105284361Rat
7639290Phb1-ps4prohibitin 1, pseudogene 44105082392105084201Rat
41389009LOC120102554U4 spliceosomal RNA4105248170105248327Rat
41141586LOC120102311uncharacterized LOC1201023114105288960105294181Rat
619821Suclg1succinate-CoA ligase GDP/ADP-forming subunit alpha4105308236105337595Rat
1334150Or6c235-ps1olfactory receptor family 6 subfamily C member 235, pseudogene 14105479255105480121Rat
1562515JkamplJNK1/MAPK8 associated membrane protein like4105520442105521542Rat
1586033Ptbp1-ps3polypyrimidine tract binding protein 1, pseudogene 34105696627105698961Rat
11472949LOC108350866uncharacterized LOC1083508664105957318105981816Rat
1586032Shc1-ps1SHC adaptor protein 1, pseudogene 14105988811105991749Rat
41373605LOC120102663small nucleolar RNA SNORA174106494538106494669Rat
41121066Fam50a-ps1family with sequence similarity 50, member A, pseudogene 14106608389106609566Rat
11468430Trnas-gcu6transfer RNA serine (anticodon GCU) 64106831010106831091Rat
1586002Cactin-ps3cactin, spliceosome C complex subunit, pseudogene 34106867095106868859Rat
2320685Slc25a39-ps8solute carrier family 25 member 39, pseudogene 84107360735107361799Rat
1585901Hnrnpc-ps3heterogeneous nuclear ribonucleoprotein C, pseudogene 34107575688107585650Rat
41247803LOC120102720small nucleolar RNA SNORA174108118729108118852Rat
2316392Vom1r-ps76vomeronasal 1 receptor pseudogene 764108297905108298689Rat
2320349Tra2b-ps2transformer 2 beta, pseudogene 24108405683108421146Rat
40933947LOC120102313uncharacterized LOC1201023134108573617108627858Rat
11402703Rpl27a-ps5ribosomal protein L27a, pseudogene 54108745019108755613Rat
41291582Npm1-ps6nucleophosmin 1, pseudogene 64108791940108792947Rat
41103026Atp5mg-ps11ATP synthase membrane subunit g, pseudogene 114108818020108821027Rat
1584754Rpl6-ps15ribosomal protein L6, pseudogene 154108858856108967329Rat
41321497LOC120102565U6 spliceosomal RNA4109168372109168478Rat
1305060Ctnna2catenin alpha 24109294249110443409Rat
1585921LRRTM1leucine rich repeat transmembrane neuronal 14109701815109718924Rat
11385872LOC108350868glyceraldehyde-3-phosphate dehydrogenase pseudogene4110616441110617544Rat
41172269LOC120102644U11 spliceosomal RNA4110662076110662209Rat
3254Reg3bregenerating family member 3 beta4110861775110865015Rat
2319874Reg3b-ps1regenerating family member 3 beta, pseudogene 14110867647110870075Rat
621401Reg3aregenerating islet-derived 3 alpha4110872398110875157Rat
3552Reg1aregenerating family member 1 alpha4110892451110895115Rat
7688358LOC102556035uncharacterized LOC1025560354110915998110999186Rat
3256Reg3gregenerating family member 3 gamma4110922805110927803Rat
7552576Stxbp3-ps1syntaxin binding protein 3, pseudogene 14111049442111054421Rat
7708743LOC102556090uncharacterized LOC1025560904111069839111075961Rat
41016841LOC120102668U1 spliceosomal RNA4111394809111394970Rat
41323577LOC120102314uncharacterized LOC1201023144111407391111454991Rat
41096961LOC120102643small nucleolar RNA SNORA514111475412111475543Rat
41159196LOC120102709small nucleolar RNA SNORA174111773083111773205Rat
1560707Lrrtm4leucine rich repeat transmembrane neuronal 44112545874113338713Rat
1586028Ldha-ps9lactate dehydrogenase A, pseudogene 94113345717113349041Rat
1595483Rps9-ps10ribosomal protein S9, pseudogene 104113401645113402234Rat
41195793LOC120102315uncharacterized LOC1201023154113504541113533897Rat
1586001Plin3-ps2perilipin 3, pseudogene 24113755510113756823Rat
1594207Got2l1glutamatic-oxaloacetic transaminase 2, mitochondrial like 14114189936114190548Rat
40972357LOC120102677small nucleolar RNA SNORA174114390354114390483Rat
6493044LOC100911370uncharacterized LOC1009113704114459942114463108Rat
1304792Gcfc2GC-rich sequence DNA-binding factor 24114481613114519268Rat
1587381Mrpl19mitochondrial ribosomal protein L194114521824114526053Rat
1559797Eva1aeva-1 homolog A, regulator of programmed cell death4114593773114643011Rat
7520921Prdx6-ps2peroxiredoxin 6, pseudogene 24114684131114684952Rat
3811Tacr1tachykinin receptor 14114920844115089733Rat
41166952LOC120102316uncharacterized LOC1201023164115098139115106023Rat
1307793Pole4DNA polymerase epsilon 4, accessory subunit4115165285115171097Rat
7711844LOC102547728uncharacterized LOC1025477284115172801115177968Rat
41162732LOC120102317uncharacterized LOC1201023174115217376115228513Rat
2797Hk2hexokinase 24115234509115283530Rat
1592965Rps27a-ps18ribosomal protein S27a, pseudogene 184115353266115353807Rat
3658Sema4fssemaphorin 4F4115411411115437721Rat
1563842M1apmeiosis 1 associated protein4115445910115536745Rat
1596846Rps25-ps8ribosomal protein S25, pseudogene 84115473792115474236Rat
41270105LOC120102319uncharacterized LOC1201023194115515273115521277Rat
1309499Dok1docking protein 14115537453115540464Rat
1311011Loxl3lysyl oxidase-like 34115540640115556958Rat
1308906Htra2HtrA serine peptidase 24115556914115560202Rat
1591777Aup1AUP1, lipid droplet regulating VLDL assembly factor4115560274115563346Rat
1591766Dqx1DEAQ box RNA-dependent ATPase 14115563497115572598Rat
1595506Tlx2T-cell leukemia homeobox 24115573736115576097Rat
1549782Pcgf1polycomb group ring finger 14115576165115587019Rat
1561172Lbx2ladybird homeobox 24115591974115593859Rat
1561779Ccdc142coiled-coil domain containing 1424115606151115616223Rat
1306709Mrpl53mitochondrial ribosomal protein L534115615329115616219Rat
41349825Rpl23-ps8ribosomal protein L23,pseudogene 84115616374115621512Rat
69240Mogsmannosyl-oligosaccharide glucosidase4115621623115625026Rat
1304961Wbp1WW domain binding protein 14115625168115627567Rat
1562258Ino80bINO80 complex subunit B4115627907115631069Rat
11518313LOC108350719uncharacterized LOC1083507194115639631115642945Rat
727874Rtknrhotekin4115640813115657952Rat
1561494Wdr54WD repeat domain 544115654968115677979Rat
1566019C4h2orf81similar to human chromosome 2 open reading frame 814115661617115667929Rat
62038Dctn1dynactin subunit 14115671024115703824Rat
1303009Slc4a5solute carrier family 4 member 54115710101115810330Rat
1311313Mthfd2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase4115811135115822663Rat
1307014Mob1aMOB kinase activator 1A4115831581115848561Rat
1305975Bola3bolA family member 34115853350115862797Rat
1590584Tet3tet methylcytosine dioxygenase 34115867412115964433Rat
7650908LOC102548361uncharacterized LOC1025483614115950040115953954Rat
1304799Dguokdeoxyguanosine kinase4115987101116014733Rat
41161074LOC120102320uncharacterized LOC1201023204116014672116016904Rat
2027Actg2actin gamma 2, smooth muscle4116021832116046475Rat
619963StambpStam binding protein4116055563116083563Rat
41018082LOC120102321uncharacterized LOC1201023214116080648116105711Rat
621062Clec4fC-type lectin domain family 4, member F4116129023116138744Rat
1565913Cd207CD207 molecule4116155229116161587Rat
41080233Gapdh-ps70Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 704116161930116162927Rat
9389444Vax2lventral anterior homeobox 2 like4116178416116195253Rat
621133Vax2ventral anterior homeobox 24116195528116219597Rat
11488278LOC108350721uncharacterized LOC1083507214116211039116218830Rat
1310619Atp6v1b1ATPase H+ transporting V1 subunit B14116223799116242475Rat
1561200Ankrd53ankyrin repeat domain 534116245561116253018Rat
1305851Tex261testis expressed 2614116253547116260730Rat
11437638LOC10835072260S ribosomal protein L27 pseudogene4116278373116281125Rat
1305057NagkN-acetylglucosamine kinase4116281179116293870Rat
1307930Paip2bpoly(A) binding protein interacting protein 2B4116292001116323387Rat
1309746Zfp638zinc finger protein 6384116355934116475051Rat
1586000Rps15-ps12ribosomal protein S15, pseudogene 124116373761116374229Rat
41152310LOC120102555U4 spliceosomal RNA4116423166116423314Rat
41233693LOC120102633small nucleolar RNA SNORA54116471399116471527Rat
1311023Dysfdysferlin4116490877116690709Rat
11421296LOC10835086960S ribosomal protein L31 pseudogene4116921291116921723Rat
631379Cyp26b1cytochrome P450, family 26, subfamily b, polypeptide 14117041808117058628Rat
1560638Exoc6bexocyst complex component 6B4117094741117550221Rat
41340927LOC120102746small nucleolar RNA U134117499018117499122Rat
1585860Smokxl-ps3sperm motility kinase X like, pseudogene 34117569008117569987Rat
41129602LOC120102669small nucleolar RNA SNORA174117587214117587345Rat
41282493LOC120102708small nucleolar RNA SNORA174117652870117652993Rat
3753Sprsepiapterin reductase4117671948117676292Rat
41009709LOC120102711small nucleolar RNA SNORA174117685079117685209Rat
1560795Spr-ps1sepiapterin reductase, pseudogene 14117689458117693286Rat
41359859LOC120102324uncharacterized LOC1201023244117723370117725707Rat
1564002Emx1empty spiracles homeobox 14117725148117741616Rat
628706Sfxn5sideroflexin 54117750213117869826Rat
1592069Rab11fip5RAB11 family interacting protein 54117871301117908819Rat
1584703Ass1-ps2argininosuccinate synthase 1, pseudogene 24117912849117927565Rat
1562910Notonotochord homeobox4117961163117965402Rat
1309153Smyd5SMYD family member 54117969615117984082Rat
1583112Pradc1protease-associated domain containing 14117984732117989710Rat
1306422Cct7chaperonin containing TCP1 subunit 74117989232118006478Rat
1566130Fbxo41F-box protein 414118007517118039547Rat
2546Egr4early growth response 44118047869118050328Rat
1311590Alms1ALMS1, centrosome and basal body associated protein4118125581118226005Rat
9142253Ybx1-ps2Y box binding protein 1, pseudogene 24118133614118134832Rat
41200685LOC120102325uncharacterized LOC1201023254118176974118190926Rat
621607Nat8f3N-acetyltransferase 8 (GCN5-related) family member 34118241792118246010Rat
621610Nat8f5N-acetyltransferase 8 (GCN5-related) family member 54118260323118285038Rat
1586026Emilin1-ps1elastin microfibril interfacer 1, pseudogene 14118262387118266491Rat
621609Nat8N-acetyltransferase 84118279521118284671Rat
2324329Nat8-ps1N-acetyltransferase 8, pseudogene 14118303631118305781Rat
1561619Nat8f2N-acetyltransferase 8 (GCN5-related) family member 24118319984118323159Rat
7636572Nat8f4N-acetyltransferase 8 (GCN5-related) family member 44118326092118332591Rat
621606Nat8f1N-acetyltransferase 8 (GCN5-related) family member 14118336208118342923Rat
1309786TprkbTp53rk binding protein4118342910118357908Rat
621605Nat8bN-acetyltransferase 8B4118359445118364351Rat
1307038Dusp11dual specificity phosphatase 114118367673118385183Rat
7547913LOC102549328uncharacterized LOC1025493284118400779118416614Rat
41388537LOC120102326uncharacterized LOC1201023264118416642118424029Rat
1564754Figlafolliculogenesis specific bHLH transcription factor4118432517118436846Rat
2042Add2adducin 24118444594118538505Rat
3849Tgfatransforming growth factor alpha4118618043118700897Rat
11502286LOC108350725uncharacterized LOC1083507254118778620118792730Rat
1304825Fam136afamily with sequence similarity 136, member A4118805129118811046Rat
1584713Snrpgsmall nuclear ribonucleoprotein polypeptide G4118812278118819827Rat
41150073LOC120102639small nucleolar RNA SNORA2/SNORA34 family4118815877118816012Rat
628652Pcyox1prenylcysteine oxidase 14118832114118842951Rat
11508600Trnag-ccc4transfer RNA glycine (anticodon CCC) 44118852419118852489Rat
1305742Tia1TIA1 cytotoxic granule-associated RNA binding protein4118852765118883252Rat
1306746C4h2orf42similar to human chromosome 2 open reading frame 424118887688118916808Rat
1561319Pcbp1poly(rC) binding protein 14118972698118974705Rat
1584384Tma7l1translation machinery associated 7 homolog like 14118986414118988248Rat
7667063LOC102554372uncharacterized LOC1025543724119012925119030617Rat
1560859Asprv1aspartic peptidase, retroviral-like 14119077415119078887Rat
1564525Mxd1max dimerization protein 14119097353119118080Rat
1310925Snrnp27small nuclear ribonucleoprotein U4/U6.U5 subunit 274119123676119133234Rat
1359265Gmcl1germ cell-less 1, spermatogenesis associated4119140598119179891Rat
621171Anxa4annexin A44119184378119241183Rat
41374913LOC120102638small nucleolar RNA SNORA2/SNORA34 family4119234751119234887Rat
1305520Aak1AP2 associated kinase 14119300128119451834Rat
2322888Rpl22-ps2ribosomal protein L22, pseudogene 24119350419119350883Rat
41257949LOC120102328uncharacterized LOC1201023284119415816119417839Rat
1307823Nfu1NFU1 iron-sulfur cluster scaffold4119458981119480162Rat
1549703Gfpt1glutamine fructose-6-phosphate transaminase 14119496691119546472Rat
1307144Antxr1ANTXR cell adhesion molecule 14119590770119778232Rat
40955934LOC120102329uncharacterized LOC1201023294119717819119729211Rat
1311934Gkn2gastrokine 24119778326119824366Rat
735014Gkn1gastrokine 14119790101119795389Rat
1597754Gkn3gastrokine 34119828859119833924Rat
1562986Bmp10bone morphogenetic protein 104119872066119877694Rat
1562105Arhgap25Rho GTPase activating protein 254119896844119974982Rat
708443Prokr1prokineticin receptor 14120022301120033367Rat
1565557Aplfaprataxin and PNKP like factor4120070471120122656Rat
41291607LOC120102330uncharacterized LOC1201023304120086931120112957Rat
2323785Cfap92cilia and flagella associated protein 924120126565120181575Rat
6497663LOC100910604uncharacterized LOC1009106044120187658120188705Rat
1596494Efcc1EF-hand and coiled-coil domain containing 14120188202120223464Rat
1561601Gp9glycoprotein IX (platelet)4120235500120237110Rat
1565300Rab43RAB43, member RAS oncogene family4120249650120269174Rat
1307688Isy1ISY1 splicing factor homolog4120276535120297227Rat
621807CnbpCCHC-type zinc finger, nucleic acid binding protein4120302768120311694Rat
2323735Gsta4-ps4glutathione S-transferase alpha 4, pseudogene 44120318859120320679Rat
41150042LOC120102331uncharacterized LOC1201023314120353804120366389Rat
9124640LOC10369217960S ribosomal protein L34 pseudogene4120362254120362604Rat
1565292Copg1COPI coat complex subunit gamma 14120366540120392502Rat
1559800Hmces5-hydroxymethylcytosine binding, ES cell specific4120392812120415616Rat
1565596H1f10H1.10 linker histone4120440515120441578Rat
61908Rab7aRAB7A, member RAS oncogene family4120461966120510756Rat
3594Rpn1ribophorin I4120543667120565069Rat
41402798LOC120102332uncharacterized LOC1201023324120567736120572576Rat
9252280LOC103692180uncharacterized LOC1036921804120584341120590943Rat
7562079LOC102554068uncharacterized LOC1025540684120590582120622585Rat
41376499LOC120102333uncharacterized LOC1201023334120648227120658210Rat
2664Gata2GATA binding protein 24120654205120667763Rat
1561981Dnajb8DnaJ heat shock protein family (Hsp40) member B84120681918120685108Rat
1562716Tcp1-ps1t-complex protein 1, pseudogene 14120705645120707221Rat
41153665LOC120102642small nucleolar RNA SNORA294120707367120707503Rat
1560552Eefseceukaryotic elongation factor, selenocysteine-tRNA-specific4120719616120915779Rat
41383162LOC120102335uncharacterized LOC1201023354120733062120737659Rat
68373Ruvbl1RuvB-like AAA ATPase 14120932486120967400Rat
1583218Rps25l3ribosomal protein S25 like 34120933765120934259Rat
68321Sec61a1SEC61 translocon subunit alpha 14120973519120987871Rat
1585999Kbtbd12kelch repeat and BTB domain containing 124121014636121088701Rat
71039Mgllmonoglyceride lipase4121192186121294187Rat
41199103Trnav-aac19transfer RNA valine (anticodon AAC) 194121218174121218246Rat
1359363Abtb1ankyrin repeat and BTB domain containing 14121299302121305667Rat
1305815Podxl2podocalyxin-like 24121306224121338070Rat
1305577Mcm2minichromosome maintenance complex component 24121346434121360962Rat
620858Tpra1transmembrane protein adipocyte associated 14121364093121375275Rat
7696532LOC102554942uncharacterized LOC1025549424121401011121454903Rat
7591615LOC102555035uncharacterized LOC1025550354121464929121479571Rat
7550029LOC102555094uncharacterized LOC1025550944121511450121516890Rat
1591392Prr20eproline rich 20E4121566632121574734Rat
41120855LOC120102337uncharacterized LOC1201023374121604758121615075Rat
41025378LOC120102338uncharacterized LOC1201023384121690045121700753Rat
41127828LOC120102339uncharacterized LOC1201023394121701048121712111Rat
41234562LOC120102340uncharacterized LOC1201023404121723881121732860Rat
1560871Plxna1plexin A14121737934121782901Rat
1304561Chchd6coiled-coil-helix-coiled-coil-helix domain containing 64121803501122024209Rat
41227538LOC120102655small nucleolar RNA SNORA484121944388121944517Rat
1308363Txnrd3thioredoxin reductase 34122072548122112493Rat
708509Vom1r90vomeronasal 1 receptor 904122139053122148056Rat
2323419Polr2m-ps3RNA polymerase II subunit M, pseudogene 34122141718122144244Rat
7512196Vom1r97l1vomeronasal 1 receptor 97 like 14122166102122172598Rat
1564573Vom1r92vomeronasal 1 receptor 924122212290122225494Rat
1549740Vom1r93vomeronasal 1 receptor 934122234616122242958Rat
1359098Vom1r94vomeronasal 1 receptor 944122274165122275145Rat
1359401Vom1r95vomeronasal 1 receptor 954122285444122286388Rat
2316391Vom1r-ps77vomeronasal 1 receptor pseudogene 774122311684122312578Rat
1549781Vom1r96vomeronasal 1 receptor 964122334287122335270Rat
708391Vom1r97vomeronasal 1 receptor 974122361863122364034Rat
2316390Vom1r-ps78vomeronasal 1 receptor pseudogene 784122370207122371034Rat
1549694Vom1r98vomeronasal 1 receptor 984122375967122376911Rat
2316389Vom1r-ps79vomeronasal 1 receptor pseudogene 794122394932122395749Rat
2316388Vom1r-ps80vomeronasal 1 receptor pseudogene 804122396580122396744Rat
1589006Vom1r99vomeronasal 1 receptor 994122430887122431711Rat
1549727Vom1r100vomeronasal 1 receptor 1004122468150122471495Rat
708395Vom1r101vomeronasal 1 receptor 1014122499102122500235Rat
708384Vom1r102vomeronasal 1 receptor 1024122537934122545602Rat
2316387Vom1r-ps81vomeronasal 1 receptor pseudogene 814122586021122586924Rat
2316386Vom1r-ps82vomeronasal 1 receptor pseudogene 824122595522122596518Rat
2316385Vom1r-ps83vomeronasal 1 receptor pseudogene 834122608252122609154Rat
2316384Vom1r-ps84vomeronasal 1 receptor pseudogene 844122613355122614266Rat
2316383Vom1r-ps85vomeronasal 1 receptor pseudogene 854122625876122626474Rat
41167200Vom1r114vomeronasal 1 receptor 11344122679045122680064Rat
2316382Vom1r-ps86vomeronasal 1 receptor pseudogene 864122686949122687878Rat
2316408Vom1r103vomeronasal 1 receptor 1034122723226122730713Rat
1587829Vom1r104vomeronasal 1 receptor 1044122768885122769850Rat
1587811C4h3orf22similar to human chromosome 3 open reading frame 224122817681122822175Rat
1562825Chst13carbohydrate sulfotransferase 134122824022122837940Rat
1587777Uroc1urocanate hydratase 14122844933122876584Rat
1561296ZxdcZXD family zinc finger C4122882389122914486Rat
1305768Cfap100cilia and flagella associated protein 1004122914693122938994Rat
70918Klf15KLF transcription factor 154122965718122978403Rat
621294Aldh1l1aldehyde dehydrogenase 1 family, member L14123059989123106471Rat
1589573Slc41a3solute carrier family 41, member 34123109555123154766Rat
1596313Iqsec1IQ motif and Sec7 domain ArfGEF 14123168719123488300Rat
41355210LOC120102710small nucleolar RNA SNORA174123361345123361441Rat
69339Nup210nucleoporin 2104123511558123609874Rat
1311706Hdac11histone deacetylase 114123645873123667407Rat
628685Fbln2fibulin 24123704289123763857Rat
69079Wnt7aWnt family member 7A4123863108123908981Rat
2316381Vom1r-ps87vomeronasal 1 receptor pseudogene 874123930673123931299Rat
1310746Chchd4coiled-coil-helix-coiled-coil-helix domain containing 44123968264123977398Rat
1549711Tmem43transmembrane protein 434123977680123992823Rat
1305760XpcXPC complex subunit, DNA damage recognition and repair factor4123993670124020922Rat
1305971Lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated4124021023124027269Rat
7539827LOC102548902uncharacterized LOC1025489024124160535124201206Rat
61912Slc6a6solute carrier family 6 member 64124195186124268880Rat
621668Grip2glutamate receptor interacting protein 24124271456124356538Rat
1305225Ccdc174coiled-coil domain containing 1744124392183124419035Rat
11410861Rps11-ps14ribosomal protein S11, pseudogene 144124395855124398410Rat
1560289C4h3orf20similar to human chromosome 3 open reading frame 204124422033124470657Rat
7553480LOC102554857uncharacterized LOC1025548574124441221124498179Rat
1305589Fgd5FYVE, RhoGEF and PH domain containing 54124497061124594564Rat
3201Nr2c2nuclear receptor subfamily 2, group C, member 24124610216124666813Rat
1308770Mrps25mitochondrial ribosomal protein S254124668320124680086Rat
1305397Rbsnrabenosyn, RAB effector4124682228124712578Rat
9301889LOC103692187uncharacterized LOC1036921874124712546124722083Rat
3903Trhthyrotropin releasing hormone4124742111124777094Rat
1306723Prickle2prickle planar cell polarity protein 24124869655125214862Rat
1306889Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 94125290633125462988Rat
7661237LOC102554570uncharacterized LOC1025545704125334112125359366Rat
40953411LOC120102343uncharacterized LOC1201023434125386934125418673Rat
7590189LOC102555978uncharacterized LOC1025559784125459772125773012Rat
41288887LOC120102344uncharacterized LOC1201023444125657909125684813Rat
41091722LOC120102670small nucleolar RNA SNORA174125861717125861845Rat
40993191LOC120102703small nucleolar RNA SNORA174126026597126026707Rat
1586441Rplp0-ps15ribosomal protein lateral stalk subunit P0, pseudogene 154126179018126180835Rat
1586025Magi1membrane associated guanylate kinase, WW and PDZ domain containing 14126205663126811354Rat
41162866Trnat-agu30transfer RNA threonine (anticodon AGU) 304126353506126353587Rat
41070385Snora44small nucleolar RNA, H/ACA box 444126415989126416119Rat
41132129Gabarap-ps3GABA type A receptor-associated protein, pseudogene 34126518341126548868Rat
2319160Dynll1l1dynein light chain LC8-type 1 like 14126581958126582522Rat
40930702LOC120102497uncharacterized LOC1201024974126723866126732961Rat
1585997Elob-ps12elongin B, pseduogene 124126816689126817049Rat
2320195Ssbp1-ps1single stranded DNA binding protein 1, pseudogene 14126884577126890225Rat
41394821LOC120102171uncharacterized LOC1201021714126995970126999766Rat
2323903Psma3-ps3proteasome 20S subunit alpha 3, pseudogene 34127029644127030164Rat
1308811Slc25a26solute carrier family 25 member 264127036704127131026Rat
1306788Lrig1leucine-rich repeats and immunoglobulin-like domains 14127130899127230956Rat
1590113Apool2apolipoprotein O-like 24127274472127275699Rat
41121964Cox6c-ps3cytochrome c oxidase subunit 6C, pseudogene 34127416018127417910Rat
11398915Trnal-aag2transfer RNA leucine (anticodon AAG) 24127454175127454256Rat
41018384Psmb3-ps2proteasome 20S subunit beta 3, pseudogene 24127536885127537501Rat
1563166Kbtbd8kelch repeat and BTB domain containing 84127675967127688785Rat
1586024Hnrnpa1-ps45heterogeneous nuclear ribonucleoprotein A1, pseudogene 454127704697127705507Rat
1583000Eef1g-ps15eukaryotic translation elongation factor 1 gamma, pseudogene 154127841801127847162Rat
1305008Suclg2succinate-CoA ligase GDP-forming subunit beta4128067031128337146Rat
1564292Nop2-ps4NOP2 nucleolar protein, pseudogene 44128479630128481920Rat
7643253Rrs1-ps7ribosome biogenesis regulator 1 homolog, pseudogene 74128616299128619872Rat
7508836LOC102549269uncharacterized LOC1025492694128652499128742024Rat
1563030Tafa1TAFA chemokine like family member 14128738028129244223Rat
11081189Nup50-ps1nucleoporin 50, pseudogene 14128787567128789296Rat
40949626LOC120102500uncharacterized LOC1201025004129086996129146558Rat
41335347Rnu6-131RNA, U6 small nuclear 1314129166306129166407Rat
41004547LOC120102499uncharacterized LOC1201024994129197518129420528Rat
1597443Tafa4TAFA chemokine like family member 44129437466129671320Rat
1359357EogtEGF domain specific O-linked N-acetylglucosamine transferase4129718897129756558Rat
620551Tmf1TATA element modulatory factor 14129759952129785705Rat
41011708LOC120102630small nucleolar RNA SNORA36 family4129770615129770745Rat
621084Uba3ubiquitin-like modifier activating enzyme 34129789526129810707Rat
708572Arl6ip5ADP-ribosylation factor like GTPase 6 interacting protein 54129810650129838628Rat
41263255LOC120102348uncharacterized LOC1201023484129815657129821673Rat
1564924Lmod3leiomodin 34129843964129858684Rat
620172Frmd4bFERM domain containing 4B4129895401130222070Rat
41178684Prune2-ps1prune homolog 2 with BCH domain, pseudogene 14130327921130328679Rat
41317950LOC120102724small nucleolar RNA SNORA174130392379130392510Rat
3092Mitfmelanocyte inducing transcription factor4130409020130621145Rat
2323009Mdfic2MyoD family inhibitor domain containing 24130845260130948054Rat
41327928Rnu6-433RNA, U6 small nuclear 4334131099002131099108Rat
1308669Foxp1forkhead box P14131559599132155092Rat
41126171LOC120102771small nucleolar RNA U34132053395132053495Rat
7669867LOC102555037uncharacterized LOC1025550374132153125132201203Rat
1586185Eif4e3eukaryotic translation initiation factor 4E family member 34132258502132301808Rat
71067Gpr27G protein-coupled receptor 274132328364132329497Rat
1561565Ier3ip1-ps1immediate early response 3 interacting protein 1, pseudogene 14132342131132342625Rat
620280Prok2prokineticin 24132346681132361754Rat
41337025LOC120102349uncharacterized LOC1201023494132466966132473095Rat
41233243LOC120102174macrophage migration inhibitory factor-like4132485219132485730Rat
9229745LOC103692198uncharacterized LOC1036921984132521989132539049Rat
41262491LOC120102350uncharacterized LOC1201023504132559007132560324Rat
11380835LOC108350738uncharacterized LOC1083507384132797064132799375Rat
1307077RybpRING1 and YY1 binding protein4132876260132928328Rat
40980164LOC120102351RING1 and YY1 binding protein4132876260132929075Rat
41024974LOC120102352uncharacterized LOC1201023524133042414133050061Rat
41314095LOC120102353uncharacterized LOC1201023534133100432133108825Rat
41140809LOC120102666small nucleolar RNA SNORA174133135428133135559Rat
41093674LOC120102354uncharacterized LOC1201023544133142571133164384Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133213357133305586Rat
41162659Actg1-ps9actin, gamma 1, pseudogene 94133306869133313492Rat
1586482Gxylt2glucoside xylosyltransferase 24133347230133449708Rat
1307312Ppp4r2protein phosphatase 4, regulatory subunit 24133454555133495486Rat
7731047LOC102555697uncharacterized LOC1025556974133577659133647925Rat
11480110LOC108350739uncharacterized LOC1083507394133581761133598613Rat
41053760LOC120102356uncharacterized LOC1201023564133648139133660193Rat
41070524C18h18orf32-ps1similar to human chromosome 18 open reading frame 32, pseudogene 14133734357133734611Rat
1592353Smtn-ps1smoothelin, pseudogene 14133742253133744275Rat
1305250Pdzrn3PDZ domain containing RING finger 34133770736133996959Rat
41163084LOC120102358uncharacterized LOC1201023584133818078133839199Rat
41240645LOC120102176uncharacterized LOC1201021764134072462134077268Rat
11469179LOC108350740uncharacterized LOC1083507404134210738134238146Rat
41246601LOC120102177uncharacterized LOC1201021774134335166134338245Rat
1586021Tuba1b-ps2tubulin, alpha 1B, pseudogene 24134342304134343235Rat
1592322Rpl13-ps14ribosomal protein L13, pseudogene 144134558719134564121Rat
3253Cntn3contactin 34134841268135214460Rat
41352693LOC120102755U2 spliceosomal RNA4134969601134969762Rat
41127226LOC120102641small Cajal body-specific RNA 164135361243135361421Rat
41361992LOC120102607U6 spliceosomal RNA4135562032135562145Rat
40943387LOC120102178uncharacterized LOC1201021784135763696135765816Rat
11484912Rpl30-ps10ribosomal protein L30, pseudogene 104135972768135975698Rat
41072523LOC120102179uncharacterized LOC1201021794136171929136192655Rat
620122Chl1cell adhesion molecule L1-like4136291504136505830Rat
6492017Rpl4-ps2ribosomal protein L4, pseudogene 24136330114136331466Rat
41102695LOC120102611U7 small nuclear RNA4136623724136623786Rat
41351198LOC120102180uncharacterized LOC1201021804136636923136641514Rat
7565639LOC102549329uncharacterized LOC1025493294136745668136762242Rat
1585995Kpna1-ps6karyopherin subunit alpha 1, pseudogene 64136818724136820326Rat
1560353Rpl13-ps10ribosomal protein L13, pseudogene 104136905705136907969Rat
1586020G3bp1-ps8G3BP stress granule assembly factor 1, pseudogene 84136952803136954495Rat
41344928LOC120102718small nucleolar RNA SNORA174137032326137032442Rat
1563492Abcf2-ps2ATP binding cassette subfamily F member 2, pseudogene 24137093916137096351Rat
62008Cntn6contactin 64137354886137751712Rat
40983794LOC120102360uncharacterized LOC1201023604138620225138624508Rat
621361Cntn4contactin 44138624584139622499Rat
41223619LOC120102503uncharacterized LOC1201025034138789618138794102Rat
1586019Pgk1-ps9phosphoglycerate kinase 1, pseudogene 94139263587139265702Rat
41158046LOC120102501uncharacterized LOC1201025014139283893139296350Rat
41247159LOC120102502uncharacterized LOC1201025024139299748139305639Rat
70938Il5rainterleukin 5 receptor subunit alpha4139630652139664593Rat
1308857Trnt1tRNA nucleotidyl transferase 14139681115139703611Rat
41372663LOC120102573U6 spliceosomal RNA4139689094139689204Rat
1310533Crbncereblon4139701154139719949Rat
11479425Alg11-ps1ALG11, alpha-1,2-mannosyltransferase, pseudogene 14139862203139863619Rat
1589884Rps7-ps6ribosomal protein S7, pseudogene 64140380731140381276Rat
1564145Lrrn1leucine rich repeat neuronal 14140476752140520210Rat
40934392LOC120102689small nucleolar RNA SNORA174140680625140680738Rat
41284758Trnas-aga13transfer RNA serine (anticodon AGA) 134140797732140797813Rat
6487745Actg1-ps3actin, gamma 1, pseudogene 34140834718140835768Rat
1565882SetmarSET domain and mariner transposase fusion gene4141046058141058183Rat
1309939Sumf1sulfatase modifying factor 14141078735141160711Rat
2933Itpr1inositol 1,4,5-trisphosphate receptor, type 14141187377141554240Rat
7723051LOC102547466uncharacterized LOC1025474664141491266141542083Rat
11461811LOC108350742uncharacterized LOC1083507424141571301141599424Rat
68439Bhlhe40basic helix-loop-helix family, member e404141618453141624154Rat
41246146LOC120102361uncharacterized LOC1201023614141728281141747563Rat
1562830Arl8bADP-ribosylation factor like GTPase 8B4141748634141792605Rat
1563633Edem1ER degradation enhancing alpha-mannosidase like protein 14141797631141829717Rat
11400916LOC108350874uncharacterized LOC1083508744141940905141942281Rat
1586018Psmc4-ps3proteasome 26S subunit, ATPase 4, pseudogene 34142081325142082608Rat
41017193LOC120102762U2 spliceosomal RNA4142280446142280654Rat
40996046LOC120102553U4 spliceosomal RNA4142973965142974049Rat
11358358LOC108350743uncharacterized LOC1083507434143321781143331269Rat
619857Grm7glutamate metabotropic receptor 74143730862144613230Rat
41180729LOC120102601U6 spliceosomal RNA4144143261144143356Rat
41219320LOC120102505cyclin-dependent kinases regulatory subunit 2-like4144220612144220990Rat
41166573Snu13-ps2small nuclear ribonucleoprotein 13, pseudogene 24144510658144511761Rat
41317445LOC120102593U6 spliceosomal RNA4144668340144668444Rat
41066235Eef1a1-ps16eukaryotic translation elongation factor 1 alpha 1, pseudogene 164145130360145132187Rat
1308963Lmcd1LIM and cysteine-rich domains 14145393153145452049Rat
1562010Ssuh2ssu-2 homolog4145502942145521881Rat
2281Cav3caveolin 34145582168145598142Rat
3239Oxtroxytocin receptor4145598549145614674Rat
1306993Rad18RAD18 E3 ubiquitin protein ligase4145735654145821102Rat
7609120LOC102548080uncharacterized LOC1025480804145820794145887127Rat
1563152Srgap3SLIT-ROBO Rho GTPase activating protein 34145839369146070556Rat
41196182LOC120102769small nucleolar RNA U34146088309146088519Rat
7623898LOC102548337uncharacterized LOC1025483374146168757146185408Rat
1560852Thumpd3THUMP domain containing 34146185422146209802Rat
41216201LOC120102586U6 spliceosomal RNA4146200474146200580Rat
6491660Thumpd3-as1THUMPD3 antisense RNA 14146210520146217026Rat
1310433Setd5SET domain containing 54146217172146294896Rat
41393297Trnap-agg26transfer RNA proline (anticodon AGG) 264146300941146301014Rat
727967Lhfpl4LHFPL tetraspan subfamily member 44146317110146340073Rat
1304842Mtmr14myotubularin related protein 144146386949146429990Rat
1309212Cpne9copine family member 94146429961146454335Rat
1584828Brpf1bromodomain and PHD finger containing, 14146456325146472781Rat
621168Ogg18-oxoguanine DNA glycosylase4146474701146481959Rat
629473Camk1calcium/calmodulin-dependent protein kinase I4146481196146492039Rat
2319531Cct3-ps6chaperonin containing TCP1 subunit 3, pseudogene 64146490625146500878Rat
2319475Ggact-ps2gamma-glutamylamine cyclotransferase, pseudogene 24146504023146505562Rat
1564009Tada3transcriptional adaptor 34146510213146521975Rat
41403052LOC120102750U2 spliceosomal RNA4146511607146511797Rat
1310096Arpc4actin related protein 2/3 complex, subunit 44146522255146532784Rat
1311255Ttll3tubulin tyrosine ligase like 34146532958146558425Rat
1307582Rpusd3RNA pseudouridine synthase D34146553743146562789Rat
7499834LOC102548450uncharacterized LOC1025484504146564239146568426Rat
1562113Cideccell death-inducing DFFA-like effector c4146569288146582173Rat
2319333Apoo-ps2apolipoprotein O, pseudogene 24146587525146589978Rat
1565488Jagn1jagunal homolog 14146591577146596287Rat
41402055LOC120102752U2 spliceosomal RNA4146594912146595102Rat
735148Il17reinterleukin 17 receptor E4146604547146618206Rat
1306392Il17rcinterleukin 17 receptor C4146618321146631444Rat
1309412Creld1cysteine-rich with EGF-like domains 14146631883146641493Rat
1562419Prrt3proline-rich transmembrane protein 34146641173146650487Rat
1311566Emc3ER membrane protein complex subunit 34146663065146678976Rat
1303172Fancd2FA complementation group D24146679014146743422Rat
1565997Fancd2osFANCD2 opposite strand4146740863146747547Rat
1598136Brk1BRICK1 subunit of SCAR/WAVE actin nucleating complex4146750821146766050Rat
3960Vhlvon Hippel-Lindau tumor suppressor4146772483146779376Rat
1309584Irak2interleukin-1 receptor-associated kinase 24146786004146842615Rat
41146337LOC120102364uncharacterized LOC1201023644146787484146795910Rat
1586017Tatdn2TatD DNase domain containing 24146845156146865708Rat
632283Ghrlghrelin and obestatin prepropeptide4146865712146869621Rat
1359555Sec13SEC13 homolog, nuclear pore and COPII coat complex component4146877739146891130Rat
2176Atp2b2ATPase plasma membrane Ca2+ transporting 24146894602147208060Rat
41203173LOC120102365uncharacterized LOC1201023654147065997147066964Rat
11380647LOC108350745uncharacterized LOC1083507454147262869147277704Rat
628737Slc6a11solute carrier family 6 member 114147297972147413319Rat
620533Slc6a1solute carrier family 6 member 14147448961147482295Rat
7575330LOC102548867uncharacterized LOC1025488674147482960147497153Rat
2830Hrh1histamine receptor H 14147564963147649353Rat
41382729LOC120102366uncharacterized LOC1201023664147575390147578136Rat
40972096LOC120102367endogenous retrovirus group K member 21 Env polyprotein-like4147699712147708407Rat
1304817Atg7autophagy related 74147718663147925656Rat
41039995LOC120102368uncharacterized LOC1201023684147735944147739532Rat
1311653Vgll4vestigial-like family member 44147925630148038519Rat
41261845LOC120102369uncharacterized LOC1201023694147944627147947997Rat
1586150Tamm41TAM41 mitochondrial translocator assembly and maintenance homolog4148070388148103728Rat
3798Syn2synapsin II4148178846148347010Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10156D4Mit181854131730729131730924Ratregion
10157D4Wox171574131730755131730914Ratregion
10158D4Arb162514131730738131730991Ratregion
10513D4Arb63064118050728118051034Ratregion
10525D4Mit311244108086268108086390Ratregion
10560D4Mit121794103194805103194984Ratregion
10561D4Wox201444103194798103194942Ratregion
10562D4Arb212804103194656103194936Ratregion
11229D4Wox281374110891355110891492Ratregion
33933D4Mit161144128289450128289560Ratregion
33991D4Mit282204110275411110275633Ratregion
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5039882RH1279622184120246672120246890Ratregion
5042326RH1293701914103375882103376073Ratregion
5042448RH1294401814115811419115811601Ratregion
5049596RH1335721884123154544123154732Ratregion
5040148RH1281172134115557124115557444Ratregion
5042644RH1295581954119588833119589028Ratregion
5042758RH1296282204120720164120720384Ratregion
5039330RH1276442174110875666110875883Ratregion
5039632RH1278171954123106251123106446Ratregion
5042094RH1292352004117871436117871636Ratregion
5042094RH1292352004117871436117871636Ratregion
5043092RH1298272204118778725118778945Ratregion
5043176RH1298751954119546230119546425Ratregion
5039684RH1278471914118810806118810997Ratregion
7192189Wnt7a2074123865107123865314Ratregion
5042324RH1293692104133884426133884636Ratregion
5040610RH1283822034115615859115616062Ratregion
5040026RH1280471814141096667141096848Ratregion
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5040082RH1280791964124742158124742354Ratregion
5040096RH1280872024146480937146481139Ratregion
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5041016RH1286151854123992421123992606Ratregion
5043860RH1302692004142750452142750654Ratregion
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5072536RH1369061924119588827119589019Ratregion
5072596RH1369411894146481737146481926Ratregion
5075054RH1383721374122112235122112372Ratregion
5075086RH1383901564124431552124431708Ratregion
5072096RH1366482084146209549146209757Ratregion
5074052RH1377912194114514729114514948Ratregion
5072834RH1370811614120236932120237093Ratregion
5075518RH1386402484120288742120288990Ratregion
5075574RH1386721354118883086118883221Ratregion
5075748RH1387741294115537463115537592Ratregion
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5072254RH1367421244118219748118219872Ratregion
5072456RH1368601884124668370124668558Ratregion
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5075026RH1383562214129985162129985383Ratregion
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5080600RH1416731804121014656121014836Ratregion
5077334RH1396961884115583602115583790Ratregion
5075088RH1383911634114518648114518811Ratregion
5079494RH1410301874141791866141792053Ratregion
5076698RH1393272474141621578141621825Ratregion
5076858RH1394192104120666683120666893Ratregion
5075800RH1388042334103917425103917658Ratregion
5076240RH1390612004146860115146860315Ratregion
5077132RH1395791974104013721104013918Ratregion
5077316RH1396861504120276375120276525Ratregion
5077954RH1400571924131561676131561868Ratregion
5077962RH1400622014121438939121439138Ratregion
5079706RH1411561834123169578123169761Ratregion
5077680RH1398961894118916370118916559Ratregion
5078202RH1402031934141509945141510139Ratregion
5078462RH1403571214120667412120667533Ratregion
5077732RH1399252154146209245146209460Ratregion
5078648RH1404661164104485354104485470Ratregion
5078764RH1405382124117674529117674738Ratregion
5078764RH1405382124117674529117674738Ratregion
5078764RH1405382124117690507117690719Ratregion
5078764RH1405382124117690507117690719Ratregion
5079946RH1412941824124869754124869936Ratregion
5080044RH1413511864104260011104260197Ratregion
5078074RH1401292024129719148129719350Ratregion
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5079112RH1407422434115621913115622248Ratregion
5079194RH1407901564117750236117750392Ratregion
5070560RH1345722144120564776120564989Ratregion
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5070960RH1348062174104131957104132174Ratregion
5080394RH1415541994132174664132174863Ratregion
5080418RH1415671824145367593145367775Ratregion
5078692RH1404931174129719148129719265Ratregion
5071182RH1349351974120103299120103496Ratregion
5071248RH1349731984146865731146866872Ratregion
5071366RH1350402174119448290119448507Ratregion
5070594RH1345921944103542071103542265Ratregion
5070622RH1346081874146842135146842322Ratregion
5070666RH1346342104123168858123169068Ratregion
5073086RH1372281594103379672103379831Ratregion
5073132RH1372571504146875552146875702Ratregion
5073868RH1376851254146558667146558792Ratregion
5070908RH1347752104115810063115810273Ratregion
5074288RH1379301744131990256131990430Ratregion
5074316RH1379461504146644529146644679Ratregion
5073480RH1374601934119163352119163545Ratregion
5073572RH1375141334146481260146481393Ratregion
5072434RH1368471814128067126128067307Ratregion
5074544RH1380781394124651528124651667Ratregion
5074752RH1381981404129328980129329120Ratregion
5071788RH1352851974124418648124418845Ratregion
5061682BF4024171594117090697117090856Ratregion
5061728BF4027121474132200182132200329Ratregion
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5070087RH944651734146898953146899126Ratregion
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5070524D6Ertd263e2194146481234146481453Ratregion
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5062280BE1064701714125357065125358486Ratregion
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5062280BE1064701714125358315125358486Ratregion
5062416BE1066511604123864606123864766Ratregion
5064034AW5294051764145598568145598744Ratregion
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5060052BF3949641254146153840146153965Ratregion
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5063058BF4102282014103913279103913480Ratregion
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5066386AU0483872674126458110126458377Ratregion
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5061596BE1055681554124663311124663466Ratregion
5082111BF4096362064125379506125379712Ratregion
5086157BM3861001574104566293104566450Ratregion
5087056BM3877431564129843486129843642Ratregion
5087112AI5026301814132277197132277459Ratregion
5087128BM3878071764122325697122325873Ratregion
5087584PMC34520P13904104361112104361502Ratregion
5087809D6Wsu137e1954120564802120564997Ratregion
5087876Gabt41954147415271147415466Ratregion
5088080Rab72374120506727120506964Ratregion
5089761AU0493472034113634434113634637Ratregion
5082919BF3904131534123674366123674519Ratregion
5088917AU0488461674105848880105849047Ratregion
5089153AU0489861074118990652118990689Ratregion
5088149Wnt7a5474123863936123864483Ratregion
5088189AU0484202944134452549134452843Ratregion
5089277AU0490602844117371969117372253Ratregion
5089307AU0490781824115972481115972664Ratregion
5089397AU0491322164118480613118480829Ratregion
5088451AU0485771084126444892126445000Ratregion
5089525AU0492072654142823737142824002Ratregion
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5090769AU0499522434145627947145628186Ratregion
5088911AU0488432984141306952141307250Ratregion
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5090639AU0498732454113238004113238249Ratregion
5084030AI1753481684103862098103862266Ratregion
5081545AA9260991244117672101117672225Ratregion
5081545AA9260991244117672101117672225Ratregion
5081545AA9260991244117693004117693128Ratregion
5081545AA9260991244117693004117693128Ratregion
5084524AI1769422304118326270118326500Ratregion
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5084700AI1032902084114456515114456723Ratregion
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5090153AU0495822144146602760146602974Ratregion
5090207AU0496142064117134108117134316Ratregion
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5085022AI0089351814133919855133920036Ratregion
5087704Atp2b22774146896756146897034Ratregion
5087741Cnbp1694120302771120302940Ratregion
5087811D6Wsu157e1614104373956104374117Ratregion
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5082237BI2743651254120297462120297587Ratregion
5085579BQ2111052034116684937116685140Ratregion
5090681AU0498971884122865191122865379Ratregion
5080874RH1418332064123107234123107440Ratregion
5090425AU0497431764121153246121153424Ratregion
5090513AU0497962784110133169110133447Ratregion
5090613AU0498571314147265968147266101Ratregion
5088723AU0487391164124045167124045283Ratregion
5088731AU0487461714131460368131460539Ratregion
5088899AU0488362484120827695120827941Ratregion
5081100RH1419652134124628136124628349Ratregion
5081128RH1419812114146861336146861547Ratregion
5081358AA9238812124104414640104414852Ratregion
5090135AU0495702914126909599126909890Ratregion
5090161AU0495872184103344415103344633Ratregion
5090215AU0496192734103635251103635521Ratregion
5089075AU0489401464119228457119228605Ratregion
5082673BE1199791604123653032123653192Ratregion
5081020RH1419182094119097380119097589Ratregion
5084476AA8504811514128067126128067277Ratregion
5082753BF3900211234117405991117406114Ratregion
5081222RH1420352204122901435122901655Ratregion
5081308RH1420851904146263612146263802Ratregion
5081346UniSTS:2261511824117731352117731534Ratregion
5083083BI2751072004124665111124665311Ratregion
5083233BG3803312314126728933126729164Ratregion
5081689BF4080771004146865461146865561Ratregion
5083819AA8008782304145735817145736047Ratregion
5083980AI2323511174119141273119141390Ratregion
5503014Loxl313564115555575115556931Ratregion
5503107CCT71064118003931118004576Ratregion
5503146RAB7A784120467340120468086Ratregion
5503328UniSTS:238061884146518727146518918Ratregion
5503585UniSTS:4646631164117054705117054821Ratregion
5504410PMC196074P22324104291604104291836Ratregion
5504510PMC262394P11274146865824146866894Ratregion
5504512PMC262394P304146868795146869548Ratregion
5504662PMC33279P14604133310167133310617Ratregion
5504268G436641284146894612146894740Ratregion
5504274D2S1554E2504118973700118973950Ratregion
5504288D3S2930E1934146898106146898299Ratregion
5504652PMC327172P12814120651590120651871Ratregion
5504811ha210216974141704357141706054Ratregion
5504867ha27071884106209232106209420Ratregion
5504869ha271704145300255145300814Ratregion
5505414Oxtr6624145613875145614537Ratregion
5505460Prok2664132348155132348221Ratregion
5505486G197171654132876338132876503Ratregion
5505229Aldh1l1684123078906123078974Ratregion
5505622UniSTS:48678214994133083451133084950Ratregion
5505626UniSTS:48763811344132328363132329497Ratregion
5505544D12S20449644121304226121305190Ratregion
5505786UniSTS:49324111344132328363132329497Ratregion
5505822UniSTS:49555010484122168346122169394Ratregion
5505935UniSTS:49661912814130586060130587341Ratregion
5506242TXP2087544121529818121530572Ratregion
5506473AFM342xc104131050442131051010Ratregion
5506533GRM7_13887684144612440144613208Ratregion
5506140UniSTS:498461704104606177104606247Ratregion
5506437UniSTS:4793056004116467421116468021Ratregion
5506445UniSTS:4803022074114921402114921609Ratregion
5507047UniSTS:2242371814142168020142168201Ratregion
5507107UniSTS:2245851954120303411120303607Ratregion
5507057UniSTS:2242782054123543954123544159Ratregion
5499517stSG61060504111297395111297655Ratregion
5499593G66214784146254556146254634Ratregion
5500563RH1359991454146663423146663568Ratregion
5500581RH1360641464118872930118873076Ratregion
5499909UniSTS:2354952114123171312123171523Ratregion
5499911UniSTS:2354961374123724546123724683Ratregion
5500021UniSTS:2362041104120319710120319820Ratregion
5499649MARC_6321-6322:992007238:1914115703010115703422Ratregion
5501005PMC117179P16974146514035146514732Ratregion
5501640UNH10423114123870702123871013Ratregion
5500178D6Mit1417304147171223147171953Ratregion
5499839UniSTS:2349592354116294332116294567Ratregion
5499915UniSTS:2354822074118005695118006215Ratregion
5499917UniSTS:2355232094146778951146779160Ratregion
5501035PMC124275P24704120462854120463324Ratregion
5501253PMC170950P13904145613871145614261Ratregion
5501414Ogg104146478876146480164Ratregion
5501594RH369058854124015064124015949Ratregion
5504490PMC23053P21104146772705146772815Ratregion
5504704PMC58532P12444120665358120666068Ratregion
5501534RH468973694129422482129422851Ratregion
5501622REN62H019764132832789132833761Ratregion
5501798MARC_12813-12814:999878148:11664116283157116283961Ratregion
5502030MARC_24177-24178:1033563974:16594103541402103542061Ratregion
5502134MARC_5405-5406:996690354:1634126179895126179958Ratregion
5502936Srgap311204145839739145840859Ratregion
5502243AI3156818124118226192118227004Ratregion
5502409RH1247491514120303077120303228Ratregion
5502471RH124966844115561661115561745Ratregion
11565149D4Nirs22244120254905120255132Ratregion
11565154D4Nirs82084120612774120612983Ratregion
Position Markers

Flank 1: (D4Arb21)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24103,194,656 - 103,194,936 (+)MAPPER
Rnor_6.0499,066,823 - 99,067,102NCBI
Rnor_5.04163,843,971 - 163,844,250UniSTS
RGSC_v3.44104,415,843 - 104,416,123RGD
RGSC_v3.44104,415,844 - 104,416,123UniSTS
RGSC_v3.14104,660,324 - 104,660,604RGD
Celera492,370,590 - 92,370,869UniSTS
Cytogenetic Map4q32UniSTS
Flank 2: (D4Arb24)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map4 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
2317587Eae26Experimental allergic encephalomyelitis QTL 26nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)488656681103194984Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
8662350Eae35Experimental allergic encephalomyelitis QTL 356.2blood tumor necrosis factor amount (VT:0008552)inflammatory exudate tumor necrosis factor level (CMO:0001435)4100834579103761084Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia3


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia3  Collagen induced arthritis QTL 3    Type II Collagen induced arthritis QTL 3  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Cxcl12, Aqp1, Il17re, Il17rc as RA associated genes 2300074
qtl_gene 672 known and 251 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_map along with Aia3 and Pia5 is contained within chromosome 4 R2 subcongenic strain DA.PVG.1AV1-(D4Mgh17-D4Rat56) 629560