Cia15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia15 (Collagen induced arthritis QTL 15) Rattus norvegicus

Symbol: Cia15
Name: Collagen induced arthritis QTL 15
RGD ID: 61425
Previously known as: Type II Collagen induced arthritis QTL 15
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.6
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.295,109,826 - 42,921,101RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.092,880,977 - 47,375,681RGD_MAPPER_PIPELINERnor6.0
Rnor_5.092,813,697 - 47,058,352RGDRnor5.0
RGSC_v3.492,948,882 - 39,821,284RGDRGSC3.4
RGSC_v3.192,948,882 - 39,822,698RGD
Cross Type: F2
Strains Crossed: BBDR/Rhw BN 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BBDR/Rhw  (IEA)
BN  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of a rat model for rheumatoid arthritis: significant gender influences on autosomal modifier loci Furuya T, etal., Hum Mol Genet 2000 Sep 22;9(15):2241-50
2. Identification of four new quantitative trait loci regulating arthritis severity and one new quantitative trait locus regulating autoantibody production in rats with collagen-induced arthritis. Griffiths MM, etal., Arthritis Rheum 2000 Jun;43(6):1278-89
3. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
4. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
5. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Ciaa3 maps to same region RGD:61066


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3080Mep1ameprin A subunit alpha91747463417504147Rat
3549Prph2peripherin 291406614914081454Rat
3983Zap70zeta chain of T cell receptor associated protein kinase 7093898975039011701Rat
2719Gnmtglycine N-methyltransferase91425467514258028Rat
619710Uggt1UDP-glucose glycoprotein glucosyltransferase 193835522938468473Rat
2753Gsta1glutathione S-transferase alpha 192370347623720121Rat
69198Rcan2regulator of calcineurin 291695947817174823Rat
61899Slc29a1solute carrier family 29 member 191539966115414203Rat
69270Slc5a7solute carrier family 5 member 7975954407626258Rat
61871RhagRh-associated glycoprotein92006980020097836Rat
70892Cdc5lcell division cycle 5-like91556494915603453Rat
2282Runx2RUNX family transcription factor 291616750416492826Rat
2293Ccnd3cyclin D391339416113400341Rat
3943Pgcprogastricsin91325746213265682Rat
70948Cnga3cyclic nucleotide gated channel subunit alpha 393944753239497883Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592383018524395984Rat
631433Prim2DNA primase subunit 293569237635904521Rat
621699Slc22a7solute carrier family 22 member 791454707314554354Rat
620936Rab5aRAB5A, member RAS oncogene family964839066512877Rat
727925Lgsnlengsin, lens protein with glutamine synthetase domain93341636233447919Rat
2888Il17ainterleukin 17A92314440223147889Rat
2892Il1r1interleukin 1 receptor type 194250491742580958Rat
2894Il1rl1interleukin 1 receptor-like 194266169442727266Rat
727867Il18rapinterleukin 18 receptor accessory protein94276811242800964Rat
620382Dnph12'-deoxynucleoside 5'-phosphate N-hydrolase 191448129614484034Rat
621637Pex6peroxisomal biogenesis factor 691425814514270335Rat
620659Clic5chloride intracellular channel 591671098016813427Rat
631367Spats1spermatogenesis associated, serine-rich 191552717915562286Rat
621653Crisp2cysteine-rich secretory protein 292010764920131967Rat
619991Vegfavascular endothelial growth factor A91495530014970641Rat
621738Khdrbs2KH RNA binding domain containing, signal transduction associated 293444702334953684Rat
621749Unc50unc-50 inner nuclear membrane RNA binding protein93966494439674369Rat
621679Adgrf5adhesion G protein-coupled receptor F591751759617624107Rat
620000Rims1regulating synaptic membrane exocytosis 192469695925196368Rat
621142Tsga10testis specific 1093999182240098239Rat
621147Il1r2interleukin 1 receptor type 294238428042424726Rat
621202Rpl31ribosomal protein L3194164740141650886Rat
621216Chst10carbohydrate sulfotransferase 1094109280541122737Rat
727959Byslbystin-like91338280613392557Rat
621064Sult1c2sulfotransferase family 1C member 2968248406848830Rat
621477Eif4g2-ps1eukaryotic translation initiation factor 4, gamma 2, pseudogene 193304688433050665Rat
68386Inpp4ainositol polyphosphate-4-phosphatase type I A93952824539650574Rat
708355Txndc9thioredoxin domain containing 994021181840221953Rat
620787Slc25a27solute carrier family 25, member 2791730689817333942Rat
619846Crisp3cysteine-rich secretory protein 392043205120472663Rat
1304925Phf3PHD finger protein 393306385533136013Rat
1304927Fam135afamily with sequence similarity 135, member A92642011626500803Rat
621388Ptcrapre T-cell antigen receptor alpha91421836614229141Rat
727803Cd2apCD2-associated protein91808674418182744Rat
1305168Mcm3minichromosome maintenance complex component 392321916923237314Rat
735017Eif5beukaryotic translation initiation factor 5B94022276940277482Rat
621070Kif6kinesin family member 691107620311373205Rat
1304864Tfap2dtranscription factor AP-2 delta92168015721744840Rat
2549Kcnh8potassium voltage-gated channel subfamily H member 8955060445945828Rat
70976Nfyanuclear transcription factor Y subunit alpha91258743712613911Rat
3768Sult1c3sulfotransferase family 1C member 3972215807266991Rat
1302946Capn11calpain 1191534405915365604Rat
735070NfkbieNFKB inhibitor epsilon91544360015450437Rat
620608Cox5bcytochrome c oxidase subunit 5B93892198038923806Rat
1304653Ccdc115coiled-coil domain containing 11593665038436654348Rat
1305571Cnnm4cyclin and CBS domain divalent metal cation transport mediator 493871172638750942Rat
1306415Med20mediator complex subunit 2091337014613382756Rat
1306321Tfap2btranscription factor AP-2 beta92178625021815785Rat
1306128Daam2dishevelled associated activator of morphogenesis 291142891311546982Rat
1305650Mgat4aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A93967342739786747Rat
1306367Gtpbp2GTP binding protein 291481396414823419Rat
1305862Tmem63btransmembrane protein 63B91531386715340722Rat
1305865Zfp451zinc finger protein 45193598544136040991Rat
61970Ptp4a1protein tyrosine phosphatase 4A193321420133245046Rat
1307308Tnfrsf21TNF receptor superfamily member 2191787915617954085Rat
1307167Trerf1transcriptional regulating factor 191363161913858326Rat
1306555Klc4kinesin light chain 491433716414351075Rat
621782Il1rl2interleukin 1 receptor-like 294259165842639351Rat
1307380Actr1bactin related protein 1B93892881938938483Rat
1308460Rnf149ring finger protein 14994182682541854381Rat
1308527Aff3ALF transcription elongation factor 394039910940856716Rat
1305902Kat2blysine acetyltransferase 2B965625256667064Rat
1306696Abcc10ATP binding cassette subfamily C member 1091465724214677178Rat
1306566Dstdystonin93613565736529617Rat
1306715Rev1REV1, DNA directed polymerase94027810040351764Rat
1306718Adgrf2adhesion G protein-coupled receptor F291823838918248745Rat
1305885Sult1c2asulfotransferase family 1C member 2A968736976904736Rat
1306756Tbcctubulin folding cofactor C91409887514100026Rat
1305744Tcte1t-complex-associated testis expressed 191546357315482258Rat
1309276Prss39protease, serine, 3993669503736713004Rat
1311710Paqr8progestin and adipoQ receptor family member 892331252123362175Rat
1311041Arid5aAT-rich interaction domain 5A93853461238549467Rat
1308423Taf8TATA-box binding protein associated factor 891349189213511713Rat
1303075Hsp90ab1heat shock protein 90 alpha family class B member 191543298615438358Rat
1310398Ankrd23ankyrin repeat domain 2393877323438779839Rat
1309583Tfebtranscription factor EB91319889013254726Rat
1359199Enpp5ectonucleotide pyrophosphatase/phosphodiesterase family member 591691018716917633Rat
1309143Dlk2delta like non-canonical Notch ligand 291467710214681515Rat
1309689Polr1cRNA polymerase I and III subunit C91473574014739852Rat
1306867Rab23RAB23, member RAS oncogene family93594352235967367Rat
1310819CracdlCRACD like93983432139950763Rat
1311586Ptpn18protein tyrosine phosphatase, non-receptor type 1893667232536689963Rat
1309049RGD1309049similar to RIKEN cDNA 4933415F2392553116525532798Rat
1311522Xpo5exportin 591474018214778171Rat
1559504Ankrd39ankyrin repeat domain 3993878029138790177Rat
1310472Ptk7protein tyrosine kinase 791435215514418494Rat
1309425Col9a1collagen type IX alpha 1 chain92658503426668222Rat
1305680BicralBICRA like chromatin remodeling complex associated protein91410025314185368Rat
1309266Tmem131transmembrane protein 13193901647039162841Rat
1307700Mitd1microtubule interacting and trafficking domain containing 194011394340125280Rat
1309218Hs6st1heparan sulfate 6-O-sulfotransferase 193828350238322684Rat
1309220Kansl3KAT8 regulatory NSL complex subunit 393856217038605757Rat
1308463Imp4IMP U3 small nucleolar ribonucleoprotein 493665412736659265Rat
1308185Yipf3Yip1 domain family, member 391473028914735644Rat
1308469Rpl7l1ribosomal protein L7-like 191419810114206119Rat
1308471Mocs1molybdenum cofactor synthesis 191154753311573935Rat
1308476Pkhd1PKHD1 ciliary IPT domain containing fibrocystin/polyductin92254739623037443Rat
1310392Bend6BEN domain containing 693608103336135309Rat
1310617Aars2alanyl-tRNA synthetase 2, mitochondrial91548463915496116Rat
1311516Mrps10mitochondrial ribosomal protein S1091361489713624819Rat
1308727Apobec2apolipoprotein B mRNA editing enzyme catalytic subunit 291256495512578461Rat
1308712Guca1aguanylate cyclase activator 1A91358769513598566Rat
1308299Oard1O-acyl-ADP-ribose deacylase 191257689412587264Rat
727869Opn5opsin 591836839318416098Rat
1306240Mrpl14mitochondrial ribosomal protein L1491530284015315195Rat
1310954Plekhb2pleckstrin homology domain containing B293704958037082231Rat
1308689Enpp4ectonucleotide pyrophosphatase/phosphodiesterase 491688892316898860Rat
1305956Tdrd6tudor domain containing 691734403317359348Rat
1306666Ppp2r5dprotein phosphatase 2, regulatory subunit B', delta91427036414300396Rat
1308191Guca1bguanylate cyclase activator 1B91359961913607455Rat
1308196Mrpl30mitochondrial ribosomal protein L3094012535240136189Rat
1309175Mad2l1bpMAD2L1 binding protein91483213314836458Rat
1308708Tjap1tight junction associated protein 191470141814725751Rat
1308589Il18r1interleukin 18 receptor 194272741642760971Rat
1307147Mrpl2mitochondrial ribosomal protein L291433323314337006Rat
1307182RGD1307182similar to RIKEN cDNA B430306N03 gene91268129012690555Rat
735229Mrps18amitochondrial ribosomal protein S18A91485332214869819Rat
1309681Npas2neuronal PAS domain protein 294146336141642322Rat
1307105Klhdc3kelch domain containing 391430234514308736Rat
1310226Frs3fibroblast growth factor receptor substrate 391328855913297285Rat
1309841Trem2triggering receptor expressed on myeloid cells 291264760512654190Rat
1305322Map4k4mitogen-activated protein kinase kinase kinase kinase 494220070842326708Rat
1306627Pgk2phosphoglycerate kinase 292048036720481933Rat
1310276Lipt1lipoyltransferase 194010793840118268Rat
1307710Tmem14atransmembrane protein 14A92364059423652379Rat
1310285Adgrf1adhesion G protein-coupled receptor F191766125817696359Rat
1311386Foxp4forkhead box P491305850613115406Rat
1311393Lman2llectin, mannose-binding 2-like93866170938683659Rat
1311393Lman2llectin, mannose-binding 2-like93868317438685249Rat
1311398Il17finterleukin 17F92319009423201482Rat
1305477Trem3triggering receptor expressed on myeloid cells 391274982112762547Rat
1309467Trem1triggering receptor expressed on myeloid cells 191276381912779285Rat
1311406Ncr2natural cytotoxicity triggering receptor 291277719512828437Rat
1308920Col19a1collagen type XIX alpha 1 chain92667391627022139Rat
1307926Cnnm3cyclin and CBS domain divalent metal cation transport mediator 393875537438770740Rat
1309663Pdcl3phosducin-like 394123432241243769Rat
1309893PolhDNA polymerase eta91477835514813210Rat
1308498Ogfrl1opioid growth factor receptor-like 192582886525842424Rat
1310693Rsph9radial spoke head component 991483956514860062Rat
1307471Cyp39a1cytochrome P450, family 39, subfamily a, polypeptide 191723045517306775Rat
1563979Prickle4prickle planar cell polarity protein 491329749413305635Rat
1561390Lrrc73leucine rich repeat containing 7391472615714730144Rat
1359633Neurl3neuralized E3 ubiquitin protein ligase 393849448638503352Rat
1560901Acta1-ps2actin, alpha 1, skeletal muscle, pseudogene 2975012257502327Rat
1560909Cnot11CCR4-NOT transcription complex, subunit 1194181492341824626Rat
1562137Lonrf2LON peptidase N-terminal domain and ring finger 294103312541070551Rat
1562008Cul9cullin 991443594814479552Rat
1559758Defb18defensin beta 1892085230020853211Rat
1564591Fam178bfamily with sequence similarity 178, member B93880586438913681Rat
1562560Vwa3bvon Willebrand factor A domain containing 3B93924952339419614Rat
1560245Defb49defensin beta 4992083268720837352Rat
620903B3gat2beta-1,3-glucuronyltransferase 292616717426250153Rat
1562461Rplp1-ps1ribosomal protein lateral stalk subunit P1, pseudogene 193684993236855302Rat
1563347Rftn1raftlin lipid raft linker 191080461111002084Rat
1565216Adgrf4adhesion G protein-coupled receptor F491827205018303219Rat
1564986LOC301165similar to hypothetical protein 4932415M13967079916732613Rat
1564811Pp2d1protein phosphatase 2C-like domain containing 1965122826533653Rat
1359641Adgre4adhesion G protein-coupled receptor E4997581069901908Rat
1560420Amer3APC membrane recruitment protein 393679035536802341Rat
1564447RGD1564447similar to Zgc:5619394249400742495112Rat
1565718Defb17defensin beta 1792088038020883895Rat
1560533Rps14-ps2ribosomal protein S14, pseudogene 293715329037153723Rat
1562074Tmem151btransmembrane protein 151B91545674615464287Rat
1559808RGD1559808similar to 40S ribosomal protein S26960190316020447Rat
3721Slc9a4solute carrier family 9 member A494282446842879767Rat
1560724Rfx8regulatory factor X894195758942021432Rat
1562800LOC302192similar to RIKEN cDNA 1700001E04961708736180127Rat
1309703Adgrb3adhesion G protein-coupled receptor B392742116828148979Rat
1359122NMSneuromedin S94116963441180697Rat
1562837Sema4csemaphorin 4C93879166838802171Rat
1559518Ttbk1tau tubulin kinase 191449316614538372Rat
1559663St6gal2ST6 beta-galactoside alpha-2,6-sialyltransferase 2991817449274161Rat
1560271MdfiMyoD family inhibitor91315680613175218Rat
1310513Usp49ubiquitin specific peptidase 4991330564013366132Rat
1563020Ptchd4patched domain containing 491846293418666272Rat
1559960RGD1559960similar to Sulfotransferase K1 (rSULT1C2)971612167203155Rat
1559965Wbp11-ps5WW domain binding protein 11, pseudogene 593076218030763745Rat
1559787Srfserum response factor91442645314435734Rat
1310734Pla2g7phospholipase A2 group VII91736221417404476Rat
1562107RGD1562107similar to class-alpha glutathione S-transferase92361969123628517Rat
1564244Cyp2ac1cytochrome P450, family 2, subfamily ac, polypeptide 192003582320058570Rat
1564056Creg2cellular repressor of E1A-stimulated genes 294187200041945413Rat
708471Lmbrd1LMBR1 domain containing 192709638727178095Rat
1560151Ankrd66ankyrin repeat domain 6691742143217441212Rat
1311831Lrfn2leucine rich repeat and fibronectin type III domain containing 291189742512066177Rat
1560332Lyg1lysozyme G194017112340182869Rat
1359451Cenpqcentromere protein Q91995704019972807Rat
1586396Ube2v1-ps22ubiquitin conjugating enzyme E2 V1, pseudogene 2293363377033634238Rat
1585834LOC680955hypothetical protein LOC68095591289530312898622Rat
1585869LOC680920similar to natural cytotoxicity triggering receptor 291284354212858881Rat
1583567Tomm6translocase of outer mitochondrial membrane 691330411113305637Rat
1566137Rpl10a-ps1ribosomal protein L10A, pseudogene 192372079823721498Rat
1584090Ppig-ps1peptidylprolyl isomerase G, pseudogene 192315970023162455Rat
1586485Uqcrb-ps2ubiquinol-cytochrome c reductase binding protein, pseudogene 292035341420353798Rat
1587643Glyatl3glycine-N-acyltransferase-like 391998423919994762Rat
1582873Pot1bprotection of telomeres 1B996703559728624Rat
1582883Vom2r77vomeronasal 2 receptor, 77995728749638896Rat
1587365Efhc1EF-hand domain containing 192337581523414283Rat
1587368Unc5clunc-5 family C-terminal like91252810912543382Rat
1566407EfhbEF hand domain family, member B963721916441678Rat
1583221Zfp318zinc finger protein 31891456295814601557Rat
1562188Cfc1cripto, FRL-1, cryptic family 193674210636751931Rat
1583959LOC691414hypothetical protein LOC691414999547209964136Rat
1561662C9h6orf132similar to human chromosome 6 open reading frame 13291352482213561756Rat
1565018Crip3cysteine-rich protein 391455445014557344Rat
1562466Defb16-psdefensin beta 16 pseudogene92087528520883814Rat
1565959RGD1565959RGD156595991287369712886364Rat
1565402Gsta6glutathione S-transferase alpha 692374326223806260Rat
1561330Prss40protease, serine, 4093676217036770979Rat
1565175Treml1triggering receptor expressed on myeloid cells-like 191263558412642929Rat
1583985Fam168bfamily with sequence similarity 168, member B93700556937038631Rat
1565095Coa5cytochrome C oxidase assembly factor 593965145939664870Rat
1565318Slc35b2solute carrier family 35 member B291543859415442227Rat
1586327Fus-ps6FUS RNA binding protein, pseudogene 693554914035550782Rat
1589151Tram2translocation associated membrane protein 292341920423498745Rat
1590809Trir-ps2telomerase RNA component interacting RNase, pseudogene 293567960735690156Rat
1590246Znrd1aszinc ribbon domain containing 1 antisense91609862416099790Rat
1591345LOC685668hypothetical protein LOC68566891066477010683943Rat
1588569Vom2r76vomeronasal 2 receptor, 76994679619492317Rat
1590872Vom2r-ps138vomeronasal 2 receptor, pseudogene 138999264929946415Rat
1592929Eif4g1-ps2eukaryotic translation initiation factor 4 gamma 1, pseudogene 2978568797861321Rat
1590757Crisp1cysteine-rich secretory protein 192074177520768796Rat
1590775Hmgb1-ps21high-mobility group box 1, pseudogene 2193182950531830438Rat
1591980Gsta3glutathione S-transferase alpha 392365857423684240Rat
1588829C9h6orf141similar to human chromosome 6 open reading frame 14192002491620029094Rat
1589660Taldo1-ps1transaldolase 1, pseudogene 1982753008276318Rat
1588537LOC360998hypothetical LOC36099891007694910085216Rat
1585200Cfl2-ps2cofilin-2, pseudogene 293593445635934941Rat
1587048Cul7cullin 791431910214333035Rat
1587662Mmutmethylmalonyl-CoA mutase91992872019956985Rat
1585173Bag2BAG cochaperone 293597003335980677Rat
1584839Kcnk16-ps1potassium two pore domain channel subfamily K member 16, pseudogene 191105906911064995Rat
1588998Sdhaf4succinate dehydrogenase complex assembly factor 492640832826416549Rat
1586777Snrpd1-ps1small nuclear ribonucleoprotein D1 polypeptide, pseudogene 192555610225556765Rat
1586179Arhgef4Rho guanine nucleotide exchange factor 493686180037005079Rat
1586180p53-psWistar clone pR53P1 p53 pseudogene92381058023812111Rat
1583681Fer1l5fer-1-like family member 593860583538661869Rat
1587021Treml4triggering receptor expressed on myeloid cells-like 491271896812743879Rat
1585305Prmt1-ps3protein arginine methyltransferase 1, pseudogene 392129985121301148Rat
1587039Treml2triggering receptor expressed on myeloid cells-like 291269445312705379Rat
1597396Khdc1KH domain containing 192381244223814932Rat
1596995Yju2-ps1YJU2 splicing factor, pseudogene 191583190715835273Rat
1596997Rbbp4-ps1RB binding protein 4, chromatin remodeling factor, pseudogene 1962818786283078Rat
1596202Khdc1bKH domain containing 1B92382199323827647Rat
1591714Dazldeleted in azoospermia-like91069557210712443Rat
1594018Tspo2translocator protein 291254461512548563Rat
1592055Hnrnpa1-ps17heterogeneous nuclear ribonucleoprotein A1, pseudogene 1793240353632405287Rat
1595639Rcn1-ps16reticulocalbin 1, pseudogene 1691000684710013135Rat
1588763LOC689725similar to chromosome 9 open reading frame 7992899323128999521Rat
1593237Ubr2ubiquitin protein ligase E3 component n-recognin 291398242714062315Rat
1593238Sgo1shugoshin 1966721096687908Rat
1585595Smap1small ArfGAP 192625017826342151Rat
1591063Rpl11-ps11ribosomal protein L11, pseudogene 1192722390727224465Rat
1594773Hnrnpc-ps2heterogeneous nuclear ribonucleoprotein C, pseudogene 292537089225371782Rat
1595491Tbc1d8TBC1 domain family, member 894165139441761432Rat
1591316Supt3hSPT3 homolog, SAGA and STAGA complex component91587829616206768Rat
1588705Dnajb6-ps6DnaJ heat shock protein family (Hsp40) member B6, pseudogene 693279874632799447Rat
1586334LOC689966similar to zinc finger protein 62293547860335480175Rat
1597751Mea1male-enhanced antigen 191430028314304130Rat
1596723LOC681367hypothetical protein LOC68136791420798814209134Rat
1597709Cnpy3canopy FGF signaling regulator 391423347814247847Rat
2306314Rps2-ps6ribosomal protein S2, pseudogene 691482672914827651Rat
2318113Zfp706-ps1zinc finger protein 706, pseudogene 193297066932970915Rat
2318314Cct7-ps4chaperonin containing TCP1 subunit 7, pseudogene 492323722223241597Rat
2318365Rplp1-ps3ribosomal protein lateral stalk subunit P1, pseudogene 392906258729063019Rat
2322325Fbxw2-ps1F-box and WD repeat domain containing 2, pseudogene 1983847868389434Rat
2321693Rrp36ribosomal RNA processing 3691430881014316959Rat
2321066Cox6a1-ps2cytochrome c oxidase subunit 6A1, pseudogene 294216974742170079Rat
2322726Kin-ps1Kin17 DNA and RNA binding protein, pseudogene 191183393011835584Rat
2323495Gosr1-ps1golgi SNAP receptor complex member 1, pseudogene 1962500516250572Rat
2323882Psme1-ps2proteasome activator subunit 1, pseudogene 292729459227295842Rat
2325527Mir133bmicroRNA 133b92309813423098217Rat
2325550Mir206microRNA 20692309424923094332Rat
2325587Mir30c2microRNA 30c-292575734225757425Rat
2325588Mir30amicroRNA 30a92573760025737670Rat
6489933Spata31e1SPATA31 subfamily E, member 193109820631104301Rat
6484877Hdac1-ps10Histone deacetylase 1, pseudogene 1093817277738173577Rat
6494554Rpl5-ps2ribosomal protein L5, pseudogene 291166787811669951Rat
6492882LOC100911489uncharacterized LOC10091148991294137112943012Rat
6485345LOC100912849uncharacterized LOC10091284991356066313582987Rat
6499794Basp1-ps1brain abundant, membrane attached signal protein 1, pseudogene 1969239616924767Rat
6496783Fbxw2-ps3F-box and WD repeat domain containing 2, pseudogene 3984033958408043Rat
6496811Lyg2lysozyme G294014114440150821Rat
6500396Eef1a1-ps1eukaryotic translation elongation factor 1 alpha 1, pseudogene 193380476333825540Rat
6500780Swi5-ps1SWI5 homologous recombination repair protein, pseudogene 193563369035641769Rat
6501168LOC100909859uncharacterized LOC10090985993894392738984878Rat
6501582LOC100909803uncharacterized LOC10090980393848109638488323Rat
7526556LOC102550162uncharacterized LOC10255016291510214115135118Rat
7527318LOC102548541uncharacterized LOC10254854191990345319930674Rat
7500673LOC102554222uncharacterized LOC10255422293850255338512621Rat
7538729Cfl1-ps4cofilin 1, pseudogene 4960564456057501Rat
7503936LOC102553880uncharacterized LOC10255388092016945220174501Rat
7647959LOC102551615uncharacterized LOC10255161593623287736236460Rat
7634142LOC102551938sulfotransferase 1C2-like967939486801969Rat
7650881LOC102547352uncharacterized LOC10254735291188214611883458Rat
7637214LOC102554281uncharacterized LOC10255428193185543031907027Rat
7638136LOC102551518uncharacterized LOC10255151893663661736646847Rat
7642378N4bp1-ps2Nedd4 binding protein 1, pseudogene 2997173159720322Rat
7629065LOC102548435uncharacterized LOC10254843591266494012672794Rat
7570521LOC102548200uncharacterized LOC10254820091244695312450780Rat
7590823LOC102548289uncharacterized LOC10254828993322266233247053Rat
7594246LOC102554116uncharacterized LOC10255411691303256913038429Rat
7556959Sik3-ps1SIK family kinase 3, pseudogene 1995068299510000Rat
7580017LOC102553447uncharacterized LOC10255344792650725926562437Rat
7567345LOC102549795uncharacterized LOC10254979592334850723376276Rat
7587989LOC102555783uncharacterized LOC10255578391687721816888739Rat
7676682Mkrn1-ps1makorin ring finger protein 1, pseudogene 192367258623673857Rat
7706003LOC102549948uncharacterized LOC10254994892351713023522234Rat
7706024LOC102547840uncharacterized LOC10254784091241534912423539Rat
7683517LOC102547709uncharacterized LOC10254770991225737912272305Rat
7743195LOC102550123uncharacterized LOC10255012392361424323645208Rat
7671069LOC102550363uncharacterized LOC10255036391523935115259876Rat
7728653LOC102554996uncharacterized LOC10255499693933222239334749Rat
7729430LOC102554152uncharacterized LOC10255415293005567730066038Rat
7680988LOC102555515uncharacterized LOC10255551593738719437388717Rat
7710987LOC102554309uncharacterized LOC10255430991326177413266883Rat
9095701LOC103690501uncharacterized LOC10369050191527904415280845Rat
9112006LOC10369049560S ribosomal protein L27a pseudogene985164298517495Rat
9117384LOC103690491uncharacterized LOC103690491959372075945454Rat
9201972LOC103690517uncharacterized LOC10369051793982797539832408Rat
9166489LOC103693202uncharacterized LOC10369320291001878610019216Rat
9222779LOC103690504ubiquitin-conjugating enzyme E2 N-like92135783621358387Rat
9231519LOC103690503uncharacterized LOC10369050391642140216423640Rat
9281506LOC103690742uncharacterized LOC1036907429997335310002936Rat
9386527Rcn1-ps12reticulocalbin 1, pseudogene 1291066528310671256Rat
9295718LOC103690509activated RNA polymerase II transcriptional coactivator p15 pseudogene91480024014802871Rat
9363755LOC103690510ADP-ribosylation factor-like protein 3 pseudogene92677224326773400Rat
9400366LOC103690615transmembrane protein 234-like963822126382523Rat
9450374LOC103690514exocrine gland-secreted peptide 1-like92014367220150293Rat
11368267LOC108351906ferritin light chain 1 pseudogene92394529823945851Rat
11365616Hsp90ab1-ps20heat shock protein 90 alpha family class B member 1, pseudogene 2092877386328789378Rat
11433453LOC108351994exocrine gland-secreted peptide 1-like92020572720212941Rat
11433865LOC108351918uncharacterized LOC10835191894202017642025870Rat
11470506LOC108351893uncharacterized LOC10835189391559848615607891Rat
11474512LOC108351903uncharacterized LOC10835190392368406623690680Rat
11443911LOC108352023uncharacterized LOC10835202394130423141307924Rat
11444069Trnae-uuc5transfer RNA glutamic acid (anticodon UUC) 593664787436647945Rat
11438663LOC10835187660S ribosomal protein L7 pseudogene997649519765788Rat
11451021LOC108351999protein transport protein Sec61 subunit gamma pseudogene94130267341303608Rat
11372666LOC108352021uncharacterized LOC10835202192965376329662453Rat
11432264LOC108351894uncharacterized LOC10835189491668964916700163Rat
11426996Mymxmyomixer, myoblast fusion factor91539663815398264Rat
11396250LOC108351885uncharacterized LOC10835188591002522110036771Rat
11397802LOC108351900uncharacterized LOC10835190092066334820670645Rat
11376343LOC108351892uncharacterized LOC10835189291548649215493269Rat
11390506Rpl36a-ps6ribosomal protein L36A, pseudogene 692018293820195730Rat
11380309LOC108351896uncharacterized LOC10835189691732570717353239Rat
11477544LOC108351895uncharacterized LOC10835189591681879716827112Rat
11497442LOC10835202060S ribosomal protein L23a pseudogene92589741325897934Rat
11484729LOC108351887uncharacterized LOC10835188791165233911678809Rat
41202713LOC120094633uncharacterized LOC12009463391336545413368597Rat
41139014LOC120094786uncharacterized LOC12009478691460636014613169Rat
41204456Rpl19-ps12ribosomal protein L19, pseudogene 1292292760822932930Rat
41205098LOC120094876U7 small nuclear RNA93481841034818473Rat
41277081LOC120094671uncharacterized LOC12009467194147413741475046Rat
41113996LOC120094785uncharacterized LOC12009478591460058414622471Rat
41114033LOC120094663uncharacterized LOC12009466393692366936928337Rat
41251599LOC120094867U6 spliceosomal RNA91469494714695052Rat
41279270Fbxw2-ps4F-box and WD repeat domain containing 2, pseudogene 4983940838398728Rat
41285703LOC120094630uncharacterized LOC12009463091157517911591773Rat
41358524Hmgn1-ps4high mobility group nucleosome binding domain 1, pseudogene 491998089919983335Rat
41115964LOC120094668uncharacterized LOC12009466893891376938918495Rat
41116177LOC120094792uncharacterized LOC12009479291574755815751915Rat
41280595LOC120094655uncharacterized LOC12009465593084836330925836Rat
41327487LOC120094868U6 spliceosomal RNA92317884423178936Rat
41360059LOC120094669uncharacterized LOC12009466993969766939727620Rat
41116623LOC120094640uncharacterized LOC12009464091743427317459213Rat
41117169LOC120094931small nucleolar RNA SNORA1793353951733539639Rat
41327919LOC120094657uncharacterized LOC12009465793177815331826103Rat
41361104LOC120094670uncharacterized LOC12009467094139821741414897Rat
41388092Rps18-ps7ribosomal protein S18, pseudogene 793604717836048807Rat
41093670LOC120094674uncharacterized LOC12009467494211183542117297Rat
41148042LOC120094654uncharacterized LOC12009465492906174329088506Rat
41148077LOC120094642uncharacterized LOC12009464291988249019909177Rat
41174992LOC120094861U6 spliceosomal RNA92369826123698371Rat
41389612LOC120094832ERC protein 2-like91005061210051922Rat
41096174LOC120094665uncharacterized LOC12009466593813057338137099Rat
41119832LOC120094916U1 spliceosomal RNA93707511237075272Rat
41262561LOC120094978U6 spliceosomal RNA92866414928664255Rat
41331243LOC12009465260S ribosomal protein L29-like92617586926176521Rat
41178156LOC120094869U6 spliceosomal RNA93391259533912698Rat
41188929LOC120094859U6 spliceosomal RNA91389540213895505Rat
41263247LOC120094658uncharacterized LOC12009465893319276933212691Rat
41343382Atp5mg-ps1ATP synthase membrane subunit g, pseudogene 191776067617760986Rat
41366852LOC120094941small nucleolar RNA SNORA1792887119028871294Rat
41098019LOC120094921small nucleolar RNA SNORA1794192134041921468Rat
41154104Rcbtb1-ps1RCC1 and BTB domain containing protein 1, pseudogene 193677613336790749Rat
41179785LOC120094634uncharacterized LOC12009463491341234313489689Rat
41190690LOC120094844uncharacterized LOC12009484493803119438033635Rat
41343656LOC120094968U4 spliceosomal RNA91738830217388446Rat
41216390LOC120094920small nucleolar RNA SNORA1792152044521520572Rat
41266739LOC120094624uncharacterized LOC120094624959646216246324Rat
41344989LOC120094629uncharacterized LOC12009462991011964410122398Rat
41102534LOC120094893small nucleolar RNA SNORA5193674634636746464Rat
41102627LOC120094892small nucleolar RNA SNORA3891458028514580409Rat
41290364LOC120094862U6 spliceosomal RNA93796214137962247Rat
41291055LOC120094873U6 spliceosomal RNA91380992913810029Rat
41346670LOC120094661thymosin beta-10-like93683736136852737Rat
41372167LOC120094984U6 spliceosomal RNA91405162814051732Rat
41127923LOC120094887small nucleolar RNA SNORA36 family91572372115723851Rat
41158924LOC120094650uncharacterized LOC12009465092555150625649126Rat
41218959LOC120094631uncharacterized LOC12009463191181960811833871Rat
41372763LOC12009478940S ribosomal protein S29-like91520739015209191Rat
41373830Erh-ps1ERH, mRNA splicing and mitosis factor, pseudogene 192375303123753355Rat
41399553LOC120094882small nucleolar RNA SNORA70963843726384506Rat
41072519Rps17-ps11ribosomal protein S17, pseudogene 11958984675905781Rat
41349498LOC120094635uncharacterized LOC12009463591582535615830665Rat
41106882LOC120094874U7 small nuclear RNA92131650421316566Rat
41107238LOC120094913small nucleolar RNA SNORA1793733515037335272Rat
41130776Rnf149-ps2ring finger protein 149, pseudogene 294182906241830546Rat
41163881LOC120094904small nucleolar RNA SNORA4894092276640922908Rat
41272310LOC120094841uncharacterized LOC12009484191779406017801338Rat
41272762LOC120094675uncharacterized LOC12009467594246667042468248Rat
41403358LOC120094907small nucleolar RNA SNORA48966078666608000Rat
41131560LOC120094645ubiquitin-like92066143520662315Rat
41295786LOC120094632uncharacterized LOC12009463291241647712417396Rat
41320429LOC120093086sulfotransferase 1C2-like969626047131268Rat
41377098LOC120094791uncharacterized LOC12009479191537192415379019Rat
41403460LOC120094638uncharacterized LOC12009463891672272016737939Rat
41133997LOC120094790uncharacterized LOC12009479091525979315270773Rat
41012750LOC120094636uncharacterized LOC12009463691657019416589380Rat
40926384LOC120094787uncharacterized LOC12009478791515706215160395Rat
40926438LOC120094981U6 spliceosomal RNA91358758613587697Rat
40953087LOC120094845uncharacterized LOC12009484594115019541158172Rat
40953770LOC120094625uncharacterized LOC120094625969564486962274Rat
40955717LOC120094934small nucleolar RNA SNORA1793085867830858801Rat
40979134LOC120094879U7 small nuclear RNA92131665421316712Rat
40980684LOC120094937small nucleolar RNA SNORA1792333872223338803Rat
40981102LOC120094948U1 spliceosomal RNA957772475777398Rat
40999450LOC120094644uncharacterized LOC12009464492046236620468036Rat
40929597Trnat-agu32transfer RNA threonine (anticodon AGU) 3291839905618399136Rat
40982266Ube2i-ps5ubiquitin-conjugating enzyme E2I, pseudogene 593598239035984367Rat
40932165LOC120094656uncharacterized LOC12009465693124350231265028Rat
41005958LOC120094637uncharacterized LOC12009463791674266316765020Rat
40935681LOC120094870U6 spliceosomal RNA996740979674202Rat
40935687Trnat-agu33transfer RNA threonine (anticodon AGU) 3394043234540432425Rat
40985982LOC120094666uncharacterized LOC12009466693849105438491752Rat
40988429LOC120094938U1 spliceosomal RNA91170829711708457Rat
40938309LOC120094673uncharacterized LOC12009467394184608641852700Rat
40964348LOC120094962U2 spliceosomal RNA92765647227656615Rat
40995448LOC120094788uncharacterized LOC12009478891518871815190122Rat
41242603LOC120094662uncharacterized LOC12009466293703746337047132Rat
41312543Trnaa-agc41transfer RNA alanine (anticodon AGC) 4193930165739301729Rat
41024403LOC120094664uncharacterized LOC12009466493812136838165876Rat
41050827LOC120094784uncharacterized LOC12009478491442431014426287Rat
41030316Rcn1-ps6reticulocalbin 1, pseudogene 691012449810125726Rat
41333059LOC120094922small nucleolar RNA SNORA1793733552637335650Rat
41053828LOC120094840uncharacterized LOC12009484091774401517747544Rat
41143660Hnrnpd-ps2heterogeneous nuclear ribonucleoprotein D, pseudogene 2987123408713866Rat
41255525LOC120094653uncharacterized LOC12009465392814930428154124Rat
41055680LOC120094628uncharacterized LOC12009462891009974910105086Rat
41144581Trnas-aga49transfer RNA serine (anticodon AGA) 49964455866445666Rat
41151456LOC120094940small nucleolar RNA SNORA1792326215223262285Rat
41057302LOC120094866U6 spliceosomal RNA92973260929732713Rat
41057709LOC120094649uncharacterized LOC12009464992559278325615957Rat
41220628LOC120094639uncharacterized LOC12009463991725419617257745Rat
41297475LOC120094927U1 spliceosomal RNA92058290620583063Rat
41031628LOC120094909small nucleolar RNA SNORA1791238394412384075Rat
41032701LOC120094842uncharacterized LOC12009484292054784420555930Rat
41059212Rbx1-ps1ring-box 1, pseudogene 192576451325773891Rat
41062037LOC120094908small nucleolar RNA SNORA4893364748933647629Rat
41036328LOC120094966U4 spliceosomal RNA93898235938982474Rat
41227410LOC120094898U11 spliceosomal RNA92856277828562911Rat
41016240LOC120094944small nucleolar RNA SNORD8994182797241828086Rat
41017258LOC120094982U6 spliceosomal RNA93029237930292485Rat
41038988LOC120094971U6 spliceosomal RNA94112322841123334Rat
41039806Rpl10a-ps8ribosomal protein L10A, pseudogene 892578826125791426Rat
41065030LOC120094660uncharacterized LOC12009466093664695436649913Rat
41065341LOC120093043small nucleolar RNA SNORA1991420347414203604Rat
41041357Rcn1-ps7reticulocalbin 1, pseudogene 791006702710067832Rat
41042201LOC120094965U4 spliceosomal RNA92844600728446144Rat
41044195LOC120094935small nucleolar RNA SNORA1792569842425698531Rat
41069681LOC120094793uncharacterized LOC12009479391624432516245932Rat
41240104LOC120094963U2 spliceosomal RNA93993229239932472Rat
41022215LOC120094839uncharacterized LOC12009483991285926412864171Rat
41240384LOC120094843uncharacterized LOC12009484392588909425898507Rat
41309300LOC120094648uncharacterized LOC12009464892308610723099478Rat
41309604LOC120094659uncharacterized LOC12009465993604918836050156Rat
41309930LOC120094646uncharacterized LOC12009464692070335220714779Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10252D7Mit1213691077552010775580Ratregion
10252D7Mit1213693513366635133728Ratregion
10873D9Uwm310191455455514554654Ratregion
33979D9Mit420494243579742436001Ratregion
34090D9Mgh822393684038536840608Ratregion
34264D9Mgh5150958577835857951Ratregion
34286D9Mgh614393145248931452632Ratregion
34413D9Mgh315094077390540774051Ratregion
33583D9Mit927192315912623159388Ratregion
36063D9Rat3717191588777915887950Ratregion
36151D9Rat4616991076977510769932Ratregion
36157D9Rat3116292121837921218540Ratregion
37220D9Rat7320194004371240043913Ratregion
37416D9Rat7019092526804425268236Ratregion
37472D9Rat8724291868264518682873Ratregion
35336D9Rat3928891563800415638292Ratregion
35437D9Rat3815191590616415906328Ratregion
35439D9Rat3514591722047617220609Ratregion
36984D9Rat2912992566118825661317Ratregion
37604D9Rat7622893696235936962591Ratregion
37634D9Rat7921591420956414209783Ratregion
37692D9Rat8221691131173811311958Ratregion
37776D9Rat8820991112370211123900Ratregion
37846D9Rat9424593428774534287990Ratregion
36510D9Rat409291401384014013932Ratregion
36707D9Rat3216091975163419751792Ratregion
34963D9Rat3415391836330118363454Ratregion
35104D9Rat16013291518425015184382Ratregion
35164D9Rat5617693441125234411424Ratregion
35623D9Rat4113391353377013533896Ratregion
35695D9Rat44176951098265109995Ratregion
35819D9Rat2614794059394440594091Ratregion
35871D9Rat3614791696139816961545Ratregion
39608D9Rat12413294286492442865057Ratregion
39788D9Rat14716093836806738368227Ratregion
39890D9Rat19322191711170917111930Ratregion
39964D9Rat15022493669731836697542Ratregion
38274D9Rat5821593691945736919672Ratregion
38320D9Rat6619991704407517044281Ratregion
40738D9Rat13014092375402423754144Ratregion
38684D9Rat7823391700715217007395Ratregion
38764D9Rat8111291487536514875477Ratregion
40022D9Rat15217492213332222133488Ratregion
40088D9Rat14812693897030038970426Ratregion
40170D9Rat13513591176556411765695Ratregion
40282D9Rat15112593344993933450064Ratregion
38914D9Rat9111993847304738473166Ratregion
39024D9Rat5922593598952735989754Ratregion
39246D9Rat6323794279151342791750Ratregion
39400D9Rat12820992554906825549279Ratregion
41928D9Rat3328691867069618670972Ratregion
42251D9Arb740094292073042921101Ratregion
42879D9Rat18120691751034817510538Ratregion
42880D9Rat18220091718628417186488Ratregion
42884D9Rat18024492411607824116997Ratregion
42884D9Rat18024492411676224116997Ratregion
42885D9Rat15715593742213437422299Ratregion
41218D9Rat13413091345703913457174Ratregion
41272D9Rat139137958596955859822Ratregion
41490D9Rat138167985680328568177Ratregion
42359D9Rat19020193923576639235966Ratregion
42360D9Rat18914793958443439584583Ratregion
42361D9Rat18822693953834739538572Ratregion
40888D9Rat12720394077391640774115Ratregion
40894D9Rat13324991463350614633755Ratregion
41556D9Rat13216091549913615499288Ratregion
41772D9Rat15824692753206327532335Ratregion
41890D9Rat19114893650327336503422Ratregion
43124D18Rat12224291957244019572673Ratregion
44547D9Got2615691758455117584707Ratregion
44549D9Got1511591173586111735976Ratregion
44550D9Got1226491102999111030254Ratregion
44551D9Got1440191184997111850371Ratregion
44553D9Got1615191338053513380686Ratregion
44555D9Got14024391364766013647903Ratregion
44555D9Got14024391364766013648039Ratregion
44556D9Got1818191505138115051562Ratregion
44557D9Got1717491538092615381100Ratregion
44558D9Hmgc122891647065216470878Ratregion
44559D9Got2212991666525216665381Ratregion
44560D9Got2324691756517617565422Ratregion
44561D9Got2521491784387917844093Ratregion
44562D9Got2016491730445817304622Ratregion
44563D9Got2117891766435817664536Ratregion
44564D9Got2717691875150418751680Ratregion
44565D9Got2816392191746021917623Ratregion
44566D9Got2919492236594722366141Ratregion
44567D9Wox1915692207116922071345Ratregion
44568D9Wox1620092219877322198945Ratregion
44569D9Got3024092291126422911504Ratregion
44570D9Got3123592429783724298072Ratregion
44571D9Got3215592354096823541123Ratregion
44573D9Got3315292351340323513555Ratregion
44574D9Got3519492550878925508983Ratregion
44576D9Got3916092847733428477492Ratregion
44576D9Got3916092847733428477539Ratregion
44577D9Got13127792636615726366431Ratregion
44578D9Got13025492701316827013422Ratregion
44580D9Got4016292725818127258343Ratregion
44581D9Got3826893148113931481407Ratregion
44582D9Got4312693150332431503450Ratregion
44583D9Got4521993210876432108981Ratregion
44585D9Got4115193222586932226020Ratregion
44586D9Got13219193301164133011832Ratregion
44587D9Got4614093686577336865913Ratregion
44588D9Got4729693830441538304711Ratregion
44590D9Got4416193857550538575638Ratregion
44591D9Got4919694008016640080362Ratregion
44592D9Got4822294011524940115471Ratregion
44593D9Got5028393951597639516259Ratregion
44594D9Got5114694177059141770737Ratregion
60643D9Got10173976083627608534Ratregion
60652D9Got1316491124880511248969Ratregion
60658D9Got1924791709245217092701Ratregion
60660D9Got2421591711998617120201Ratregion
60670D9Got9147959002275900374Ratregion
60825D9Wox20107987630218763131Ratregion
60826D9Wox22152979545577954713Ratregion
60827D9Wox23160979545567954720Ratregion
625824D9Got3620392884958728849792Ratregion
61288D9Uia917994249516442495343Ratregion
62475D1Uia414091743533817435380Ratregion
62508D9Uia1187992644979264638Ratregion
66417D9Mco126993754075537541153Ratregion
67305D9Arb838594292072642921111Ratregion
67786D9Uwm214293829996138300103Ratregion
1334445D9Wox1817892207120022071398Ratregion
1630338D9Got20225791390887313909130Ratregion
1631969D9Wox2816791340125813401435Ratregion
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5504570PMC305791P167191442723214427903Ratregion
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5504438PMC20712P193491495436714955301Ratregion
5505167Il18rap47194279787142798342Ratregion
5506360UniSTS:478964160192660536226606963Ratregion
5506491D11S41431536976654537666991Ratregion
5506698REN3602081491148830111489115Ratregion
5506881G4720226693997422639974492Ratregion
5506975fc48d10.y146793627977436280241Ratregion
5500424REN6052925091320278613203036Ratregion
5499697Dazl110691070094810702054Ratregion
5499699UniSTS:2341159694232503642325132Ratregion
5502303RH12435427391339416613394439Ratregion
5500605RH136188207965116546511861Ratregion
5500414REN5958323691297041612970652Ratregion
5500416REN5959524091297311212973352Ratregion
5500418REN5982725291303250213032754Ratregion
5500420REN5999425491307481213075066Ratregion
5500422REN6051524791319949513199742Ratregion
5500450AW184596286975018637502149Ratregion
5500649RH136456190965116546511844Ratregion
5503436stSG63486098491310355213104536Ratregion
5500897D4S157952291096758210968104Ratregion
5501742MARC_10377-10378:999102157:1147591477488414776359Ratregion
5506575VEGF_112782491496919014970014Ratregion
5506583AW46451710392555624825556351Ratregion
5501886MARC_16785-16786:1033500245:365091433079814331448Ratregion
5502086MARC_3939-3940:996679197:321792323455523235166Ratregion
5502447RH1248918791431930814319395Ratregion
55027409STS0113993297052732970666Ratregion
5502762TBC1D818094165315041653482Ratregion
5502975Tcfap2b47992181144221811921Ratregion
5502353RH12456518192555636125556542Ratregion
5502473RH1249838293839391038393992Ratregion
Position Markers

Flank 1: (D9Rat44)
Rat AssemblyChrPosition (strand)Source
mRatBN7.295,109,826 - 5,109,995 (+)MAPPER
Rnor_6.092,880,977 - 2,881,145NCBI
Rnor_5.092,813,697 - 2,813,865UniSTS
RGSC_v3.492,948,882 - 2,949,051RGD
RGSC_v3.492,948,883 - 2,949,051UniSTS
RGSC_v3.192,948,882 - 2,949,051RGD
Celera91,991,507 - 1,991,679UniSTS
SHRSP x BN Map91.33UniSTS
SHRSP x BN Map91.33RGD
FHH x ACI Map90.08RGD
Cytogenetic Map9 RGD
Peak: (D9Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.295,857,783 - 5,857,951 (-)MAPPER
Rnor_6.093,309,754 - 3,309,921NCBI
Rnor_5.0937,250,734 - 37,250,901UniSTS
RGSC_v3.492,176,482 - 2,176,650RGD
RGSC_v3.492,176,483 - 2,176,650UniSTS
RGSC_v3.192,176,482 - 2,176,650RGD
Celera92,719,700 - 2,719,867UniSTS
Cytogenetic Map9q11UniSTS
Flank 2: (D9Arb7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,920,730 - 42,921,101 (+)MAPPER
Rnor_6.0947,375,311 - 47,375,681NCBI
Rnor_5.0947,057,982 - 47,058,352UniSTS
RGSC_v3.4939,820,913 - 39,821,284RGD
RGSC_v3.4939,820,914 - 39,821,284UniSTS
RGSC_v3.1939,822,327 - 39,822,698RGD
Celera940,663,207 - 40,663,577UniSTS
SHRSP x BN Map937.7599RGD
SHRSP x BN Map937.7599UniSTS
Cytogenetic Map9 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)927457995857951Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia15


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia15  Collagen induced arthritis QTL 15    Type II Collagen induced arthritis QTL 15  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Zap70, Vegfa and Col9a1 as RA associated genes 2300074
qtl_gene 251 known and 64 novel genes were found in an analysis based on PubMed and OMIM data 2307198