Pia4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Pia4 (Pristane induced arthritis QTL 4) Rattus norvegicus

Symbol: Pia4
Name: Pristane induced arthritis QTL 4
RGD ID: 61416
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: arthritic paw count   (CMO:0001460)    
LOD Score: 8.4
P Value: Not Available
Variance: Not Available
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,635,523 - 30,827,399RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01215,714,609 - 35,964,508RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01217,721,341 - 37,844,419RGDRnor5.0
RGSC_v3.412568,621 - 45,568,621RGDRGSC3.4
Cross Type: F2
Strains Crossed: DA E3 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
E3  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Advanced intercross line mapping suggests that ncf1 (ean6) regulates severity in an animal model of guillain-barre syndrome. Huberle A, etal., J Immunol. 2009 Apr 1;182(7):4432-8.
2. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
4. Genetic control of arthritis onset, severity and chronicity in a model for rheumatoid arthritis in rats. Vingsbo-Lundberg C, etal., Nat Genet 1998 Dec;20(4):401-4
5. The genetic control of rheumatoid factor production in a rat model of rheumatoid arthritis. Wernhoff P, etal., Arthritis Rheum. 2003 Dec;48(12):3584-96.
6. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
7. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Eau2 interacts with RGD:61073
Ean6 maps to same region RGD:2306769
Pia12 maps to same region RGD:2300074
Pia38 maps to same region RGD:2302026
Eae5 maps to same region RGD:2306769
Cia12 maps to same region RGD:2302026


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2323211Card11caspase recruitment domain family, member 11121362114013758115Rat
71018Gna12G protein subunit alpha 12121380558013886255Rat
1311314Amz1archaelysin family metallopeptidase 1121388651813924275Rat
1565146Brat1BRCA1-associated ATM activator 1121392888913951760Rat
1311349IqceIQ motif containing E121394329013982708Rat
1309549Ttyh3tweety family member 3121399683114025457Rat
620587LfngLFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase121403055114038996Rat
71055Grifingalectin-related inter-fiber protein121408017014082892Rat
1308214Chst12carbohydrate sulfotransferase 12121411063114129099Rat
1598146Kif19bkinesin family member 19B121414416314196259Rat
41188349LOC120095895uncharacterized LOC120095895121414908814152690Rat
41182922LOC120096093U6 spliceosomal RNA121416998914170094Rat
1309018Eif3beukaryotic translation initiation factor 3, subunit B121419640314220865Rat
11502171LOC108352425uncharacterized LOC108352425121422308014265458Rat
1305791Snx8sorting nexin 8121425182914300435Rat
621080Nudt1nudix hydrolase 1121430251414309559Rat
1305944Mrm2mitochondrial rRNA methyltransferase 2121430955614314759Rat
1596881Mad1l1mitotic arrest deficient 1 like 1121432089214630750Rat
1308787Elfn1extracellular leucine-rich repeat and fibronectin type III domain containing 1121466004914725709Rat
2319950Psmg3proteasome assembly chaperone 3121480944014812357Rat
1306702Tmem184atransmembrane protein 184A121481750814833109Rat
628633MafkMAF bZIP transcription factor K121483462814856414Rat
7519900LOC102546414uncharacterized LOC102546414121484552214848118Rat
1308908Ints1integrator complex subunit 1121486131214886048Rat
1307875Micall2MICAL-like 2121489918814927949Rat
69361UncxUNC homeobox121509277915097300Rat
11414185Npm1-ps12nucleophosmin 1, pseudogene 12121513561915136849Rat
1310991Zfand2azinc finger AN1-type containing 2A121516160115172679Rat
1566418C12h7orf50similar to human chromosome 7 open reading frame 50121518572815289042Rat
619845Gper1G protein-coupled estrogen receptor 1121521721715222679Rat
7673409C130050O18RiklRIKEN cDNA C130050O18 gene like121522974315241457Rat
1560731Gpr146G protein-coupled receptor 146121525193615267217Rat
2325466Mir339microRNA 339121527754615277641Rat
1305193Cyp2w1cytochrome P450, family 2, subfamily w, polypeptide 1121529155215296421Rat
1305631Cox19cytochrome c oxidase assembly factor COX19121530353515313014Rat
621418Adap1ArfGAP with dual PH domains 1121532391315376110Rat
1311660Get4guided entry of tail-anchored proteins factor 4121537700915394238Rat
1359142Sun1Sad1 and UNC84 domain containing 1121539637815441277Rat
7682710LOC102547493uncharacterized LOC102547493121543065715453779Rat
1566028Dnaaf5dynein, axonemal, assembly factor 5121545363615492722Rat
3392Prkar1bprotein kinase cAMP-dependent type I regulatory subunit beta121549223315624942Rat
9133748LOC103691050uncharacterized LOC103691050121563246015636507Rat
3282Pdgfaplatelet derived growth factor subunit A121564554915667056Rat
7536442LOC10254879440S ribosomal protein S27-like121577683915778793Rat
1594158Foxl3forkhead box L3121581217715814534Rat
1311980Fam20cFAM20C, golgi associated secretory pathway kinase121582686415885423Rat
41016460Ppp1r14b-ps2protein phosphatase 1, regulatory (inhibitor) subunit 14B, pseudogene121589313815975566Rat
1566386Znf846zinc finger protein 846121597931216012933Rat
1310463Zfp68zinc finger protein 68121602605816040995Rat
1562569Rps8-ps9ribosomal protein S8, pseudogene 9121604777616048497Rat
1625997Vom2r-ps98vomeronasal 2 receptor, pseudogene 98121606460616066575Rat
41315690Spn-ps4sialophorin, pseudogene 4121609028116097302Rat
6499499Spn-ps1sialophorin, pseudogene 1121610035416101498Rat
1598204Spn-ps7sialophorin, pseudogene 7121610570516106765Rat
6499303Spn-ps2sialophorin, pseudogene 2121611083816112028Rat
2319349Spn-ps6sialophorin, pseudogene 6121611083816117345Rat
1559964Spnl2sialophorin like 2121612615016131108Rat
1598202Spn-ps8sialophorin, pseudogene 8121613127516133558Rat
1359506Spnl1sialophorin like 1121613658316147719Rat
41150475Spn-ps5sialophorin, pseudogene 5121614788516150072Rat
6497070Spn-ps3sialophorin, pseudogene 3121615474016156686Rat
1591744Auts2l1autism susceptibility candidate 2 like 1121619607116233257Rat
1359435Zfp157zinc finger protein 157121624823016279459Rat
1332710Or7a43-ps1olfactory receptor family 7 subfamily A member 43, pseudogene 1121628844616289236Rat
1305017Dhrsxdehydrogenase/reductase X-linked121629976816304553Rat
708472Asmtacetylserotonin O-methyltransferase121630471916309568Rat
1564640Akap17aA-kinase anchoring protein 17A121631042716315166Rat
1306877Asmtlacetylserotonin O-methyltransferase-like121631533516318083Rat
628728Il3rainterleukin 3 receptor subunit alpha121631808116323781Rat
1560288Pum3-ps3pumilio RNA-binding family member 3, pseudogene 3121635713116359221Rat
1595919Cyp3a62cytochrome P450, family 3, subfamily a, polypeptide 62121639799816433833Rat
7641109LOC102554019uncharacterized LOC102554019121642643916479103Rat
7612525LOC102554070uncharacterized LOC102554070121656636616569183Rat
41378758Fus-ps5FUS RNA binding protein, pseudogene 5121657167116577185Rat
1593752Tubb4b-ps2tubulin, beta 4B class IVb, pseudogene 2121661134416612890Rat
1584948Cbwd1-ps2COBW domain containing 1, pseudogene 2121662616216629000Rat
1562172Spry3sprouty RTK signaling antagonist 3121666318816673124Rat
621558Vamp7vesicle-associated membrane protein 7121672848616764261Rat
708392Cyp3a9cytochrome P450, family 3, subfamily a, polypeptide 9121680622216846428Rat
1595709LOC498158hypothetical LOC498158121686689516867939Rat
2319106Rpl31l4ribosomal protein L31-like 4121689311116893551Rat
727930Gjc3gap junction protein, gamma 3121689984616912309Rat
7581366Ccdc90b-ps1coiled-coil domain containing 90B, pseudogene 1121690674816908225Rat
2187Azgp1alpha-2-glycoprotein 1, zinc-binding121693099016939333Rat
41111819Rpl34-ps3ribosomal protein L34, pseudogene 3121696413416964559Rat
1560616Zkscan1zinc finger with KRAB and SCAN domains 1121696628716987680Rat
41041701LOC120095841uncharacterized LOC120095841121697612216995839Rat
9368177Elocl1elongin C like 1121698971716991140Rat
1309981Zscan21zinc finger and SCAN domain containing 21121699849617024167Rat
9205257LOC103691091NHP2-like protein 1 pseudogene121701804017019347Rat
6489147Zfp113zinc finger protein 3121702210417033776Rat
1309919Cops6COP9 signalosome subunit 6121703897917041818Rat
1303018Mcm7minichromosome maintenance complex component 7121704220717049470Rat
2325594Mir25microRNA 25121704293217043015Rat
2325459Mir93microRNA 93121704313517043221Rat
2325388Mir106bmicroRNA 106b121704334417043425Rat
1310233Ap4m1adaptor related protein complex 4 subunit mu 1121704976617055954Rat
1311608Taf6TATA-box binding protein associated factor 6121705586417064244Rat
1307636Cnpy4canopy FGF signaling regulator 4121706464217070755Rat
1306932Mblac1metallo-beta-lactamase domain containing 1121707146517072736Rat
1588255Nxpe5neurexophilin and PC-esterase domain family, member 5121709762417119700Rat
1587058Nxpe5l2neurexophilin and PC-esterase domain family, member 5 like 2121712410417142519Rat
1587046Ptmal1prothymosin alpha like 1121715294917153791Rat
7675853LOC102551138uncharacterized LOC102551138121717846417200736Rat
1559954Nxpe5l1neurexophilin and PC-esterase domain family, member 5-like 1121718656617196784Rat
41070362LOC120095896NXPE family member 3-like121720844017225545Rat
1562319Nxpe5l3neurexophilin and PC-esterase domain family, member 5 like 3121723831117252723Rat
1309735Lamtor4late endosomal/lysosomal adaptor, MAPK and MTOR activator 4121725865617262478Rat
1305455Trappc14trafficking protein particle complex subunit 14121726274817267093Rat
1561105Gal3st4galactose-3-O-sulfotransferase 4121726796317276951Rat
621363Gpc2glypican 2121727787517284297Rat
621333Stag3STAG3 cohesin complex component121728467717314936Rat
1585866PvrigPVR related immunoglobulin domain containing121736372117365577Rat
1559588Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121739884417404810Rat
1562930Vom2r61vomeronasal 2 receptor, 61121743891117465634Rat
1598200Vom2r62vomeronasal 2 receptor, 62121752466217542226Rat
11466946Vmn2r116l-ps4vomeronasal 2, receptor 116 like, pseudogene 4121758263517615711Rat
1564022Vom2r63vomeronasal 2 receptor, 63121762514117652806Rat
1562525Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121767486017682715Rat
1566006Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121772021317732681Rat
41122052Rap1b-ps1RAP1B, member of RAS oncogene family, pseudogene 1121773295517734674Rat
40977068Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121774431517756074Rat
41102335Rap1b-ps2RAP1B, member of RAS oncogene family, pseudogene 2121775685017757928Rat
1561143Pilrb2paired immunoglobin like type 2 receptor beta 2121777304717779527Rat
6497409Pilrapaired immunoglobin-like type 2 receptor alpha121778716917798149Rat
6497217Zcwpw1l1zinc finger CW-type and PWWP domain containing 1-like 1121779865017812208Rat
7553419Pilrb1l1paired immunoglobin-like type 2 receptor beta 1 like 1121782366217828030Rat
1598199Vom2r-ps104vomeronasal 2 receptor, pseudogene 104121786250917880232Rat
41389804Vmn2r116l-ps7vomeronasal 2, receptor 116 like, pseudogene 7121790355317929309Rat
41145634Vmn2r116l-ps10vomeronasal 2, receptor 116 like, pseudogene 10121794226217956785Rat
1641975Vom2r-ps107vomeronasal 2 receptor, pseudogene 107121801328818014187Rat
41105168Vmn2r116l-ps11vomeronasal 2, receptor 116 like, pseudogene 11121803529818043422Rat
1583509Pilrb1l1paired immunoglobin-like type 2 receptor beta 1 like 1121808141018089619Rat
41031955Pilrb-ps5paired immunoglobin-like type 2 receptor beta, pseudogene 5121818675818190046Rat
1561730Pilrb2l3paired immunoglobin like type 2 receptor beta 2 like 3121821053518216471Rat
41017732Trnag-acc1transfer RNA glycine (anticodon ACC) 1121822243818222512Rat
41111820Pilrb1l1paired immunoglobin-like type 2 receptor beta 1 like 1121822248018237114Rat
1559499Pilrb-ps7paired immunoglobin-like type 2 receptor beta, pseudogene 7121825144218257788Rat
1626043Vom2r-ps103vomeronasal 2 receptor, pseudogene 103121829031018300323Rat
41201467Vmn2r116l-ps8vomeronasal 2, receptor 116 like, pseudogene 8121831329718350370Rat
1626049Vom2r-ps101vomeronasal 2 receptor, pseudogene 101121837651218387463Rat
1584665Vom2r64vomeronasal 2 receptor, 64121841940918449218Rat
1625996Vom2r-ps100vomeronasal 2 receptor, pseudogene 100121846688518480996Rat
1584675Pilrb1paired immunoglobin-like type 2 receptor beta 1121851616118525375Rat
1563400Pilrb2l2paired immunoglobin like type 2 receptor beta 2 like 2121856684118580286Rat
6496729Pilrb-ps1paired immunoglobin-like type 2 receptor beta, pseudogene 1121860115618607655Rat
1560262Pilrb-ps6paired immunoglobin-like type 2 receptor beta, pseudogene 6121860905518630916Rat
1596422Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121863684418651872Rat
41169192LOC120095853uncharacterized LOC120095853121865363018661701Rat
40963637Pilrb-ps4paired immunoglobin-like type 2 receptor beta, pseudogene 4121870450918710373Rat
41202788LOC120095904uncharacterized LOC120095904121872580418728687Rat
11492645Pilrb-ps2paired immunoglobin-like type 2 receptor beta, pseudogene 2121877185018777708Rat
1597726Pilrbl1paired immunoglobin-like type 2 receptor beta like 1121879284018799391Rat
40942766Pilrb-ps3paired immunoglobin-like type 2 receptor beta, pseudogene 3121880167318811757Rat
7556717Pilrb1l2paired immunoglobin-like type 2 receptor beta 1 like 2121881408518837515Rat
9261510LOC103693637ras-related protein Rap-1b pseudogene121882114618821924Rat
41314880Rap1b-ps3RAP1B, member of RAS oncogene family, pseudogene 3121883809818839898Rat
41173580Pilrb2l1paired immunoglobin like type 2 receptor beta 2 like 1121885345218861001Rat
6498401LOC100910497paired immunoglobulin-like type 2 receptor alpha-like121886630118881290Rat
1305405Zcwpw1zinc finger CW-type and PWWP domain containing 1121888062518910713Rat
1560550Mepcemethylphosphate capping enzyme121891179618916515Rat
1584367Ppp1r35protein phosphatase 1, regulatory subunit 35121891590918919253Rat
11442159Spacdrsperm acrosome developmental regulator121893060818936787Rat
1584380Tsc22d4TSC22 domain family, member 4121893915018952008Rat
1310964Nyap1neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1121895619218967624Rat
1591278Echdc2-ps1enoyl CoA hydratase domain containing 2, pseudogene 1121898935318992172Rat
1306590Agfg2ArfGAP with FG repeats 2121901222819048433Rat
69317Irs3insulin receptor substrate 3121905314819055286Rat
1562406Sap25Sin3A-associated protein 25121905576219057425Rat
1306145Lrch4leucine rich repeats and calponin homology domain containing 4121905758219072573Rat
1305095Fbxo24F-box protein 24121907266819083067Rat
11511026LOC108352432uncharacterized LOC108352432121907583919095304Rat
3270Pcolceprocollagen C-endopeptidase enhancer121908419119090508Rat
1304973Mospd3motile sperm domain containing 3121909520319100303Rat
1310152Tfr2transferrin receptor 2121910767319124622Rat
1307763Actl6bactin-like 6B121912488719141419Rat
69319Gnb2G protein subunit beta 2121915900219164021Rat
1309933Gigyf1GRB10 interacting GYF protein 1121916607019181570Rat
1306413Pop7POP7 homolog, ribonuclease P/MRP subunit121918938419190425Rat
2559Epoerythropoietin121920425819207948Rat
1305044Zanzonadhesin121921501819322789Rat
1583193Ephb4EPH receptor B4121932641119351667Rat
9263674LOC103691283uncharacterized LOC103691283121936730619368987Rat
620747Slc12a9solute carrier family 12, member 9121936899019385881Rat
1583180Trip6thyroid hormone receptor interactor 6121938621219390619Rat
1591241Srrtserrate, RNA effector molecule121939257819406098Rat
7536909Ufsp1UFM1-specific peptidase 1121940613319407147Rat
69313Acheacetylcholinesterase121940613319413713Rat
41199718LOC120095907uncharacterized LOC120095907121941722819420134Rat
40994669LOC120095953mucin-3A-like121943221419442687Rat
6485223Muc3amucin 3A, cell surface associated121945067919454753Rat
41045133Muc3l1mucin 3 like 1121945578319462165Rat
41019124LOC120095954mucin-12-like121948241219485946Rat
40984024LOC120095955mucin-12-like121948604119493995Rat
41257084LOC120095957mucin-12-like121949503719498028Rat
41109471LOC120095909uncharacterized LOC120095909121950066119501189Rat
41386117LOC120095958spore coat protein SP96-like121950835319521577Rat
3124Muc3mucin 3121952725119536924Rat
40958426Trim56tripartite motif containing 56121954491319567324Rat
41120780LOC120095911uncharacterized LOC120095911121954803519556511Rat
3249Serpine1serpin family E member 1121960127219611657Rat
1305911Ap1s1adaptor related protein complex 1 subunit sigma 1121962526719635792Rat
69399VgfVGF nerve growth factor inducible121963731319645123Rat
1592588Mogat3monoacylglycerol O-acyltransferase 3121966870319669420Rat
631339Plod3procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3121967638419686945Rat
4888576Mir702microRNA 702121968180919681915Rat
2322870Znhit1zinc finger, HIT-type containing 1121968660619692880Rat
1310678Cldn15claudin 15121969816719708419Rat
1306668Fis1fission, mitochondrial 1121970856019723392Rat
6496734LOC100910802uncharacterized LOC100910802121974235519757486Rat
1305370Ift22intraflagellar transport 22121975907219768859Rat
1591401Col26a1collagen type XXVI alpha 1 chain121979269319938556Rat
1561258Myl10myosin light chain 10121996917419982627Rat
41397405LOC120095912uncharacterized LOC120095912122004641720053457Rat
620618Cux1cut-like homeobox 1122010706220425868Rat
69284Sh2b2SH2B adaptor protein 2122042705720456845Rat
1595708Prkrip1PRKR interacting protein 1122047080220491789Rat
1310213Orai2ORAI calcium release-activated calcium modulator 2122050030820520428Rat
1308608Alkbh4alkB homolog 4, lysine demethylase122052403020529947Rat
1359442Lrwd1leucine-rich repeats and WD repeat domain containing 1122053003520543078Rat
1310198Polr2jRNA polymerase II subunit J122054303820548590Rat
1565457Rasa4RAS p21 protein activator 4122055280520580177Rat
1598237Upk3bl1uroplakin 3B like 1122061035320616366Rat
41214653LOC120095913uncharacterized LOC120095913122062250520633507Rat
1309615Upk3buroplakin 3B122063023120637634Rat
1561790Dtx2deltex E3 ubiquitin ligase 2122064328920682908Rat
41148403LOC120096097U6 spliceosomal RNA122064436520644470Rat
620606Zp3zona pellucida glycoprotein 3122069054720697513Rat
1306970Ssc4dscavenger receptor cysteine rich family member with 4 domains122070293120723732Rat
40927760LOC120096095U6 spliceosomal RNA122072241820722523Rat
62002Ywhagtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma122074450020772828Rat
41184641Rps11-ps6ribosomal protein S11, pseudogene 6122078737120791987Rat
61306Hspb1heat shock protein family B (small) member 1122079401420795675Rat
1587868Srrm3serine/arginine repetitive matrix 3122080887820878557Rat
11499585LOC108352435uncharacterized LOC108352435122088043520891489Rat
619719Mdh2malate dehydrogenase 2122089426920907225Rat
1305845Styxl1serine/threonine/tyrosine interacting-like 1122090741020940232Rat
1311474Tmem120atransmembrane protein 120A122094224320950908Rat
68335Porcytochrome p450 oxidoreductase122095105820999198Rat
1308231Rhbdd2rhomboid domain containing 2122104360521054305Rat
1310245Ccl24C-C motif chemokine ligand 24122110083521104832Rat
1587817Ccl26C-C motif chemokine ligand 26122110938421114336Rat
1583828Rps13-ps4ribosomal protein S13, pseudogene 4122112530921125763Rat
620305Hip1huntingtin interacting protein 1122113336421267796Rat
41306277LOC120095918uncharacterized LOC120095918122115005021151606Rat
620680Pom121POM121 transmembrane nucleoporin122127371321294299Rat
41275322LOC120095917uncharacterized LOC120095917122127463921276764Rat
1309268Nsun5NOP2/Sun RNA methyltransferase 5122129363721299319Rat
631346Trim50tripartite motif-containing 50122130078421317668Rat
1308926Fkbp6FKBP prolyl isomerase family member 6122131825121390350Rat
41198486LOC120095916uncharacterized LOC120095916122139043821401115Rat
628817Fzd9frizzled class receptor 9122142708421429398Rat
1597089Baz1bbromodomain adjacent to zinc finger domain, 1B122143198521489956Rat
41064979LOC1200960805S ribosomal RNA122147615321476268Rat
1597090Bcl7bBAF chromatin remodeling complex subunit BCL7B122149686021510079Rat
1595038Tbl2transducin (beta)-like 2122151760021531896Rat
620400MlxiplMLX interacting protein-like122154160821577120Rat
1587769Vps37dVPS37D subunit of ESCRT-I122160921021614669Rat
1595783Dnajc30DnaJ heat shock protein family (Hsp40) member C30122162831921629398Rat
1589742Bud23BUD23, rRNA methyltransferase and ribosome maturation factor122162955121640758Rat
41383089LOC120096124small Cajal body-specific RNA 20122163961521639747Rat
69430Stx1asyntaxin 1A122164197121670022Rat
1585479Abhd11-as1ABHD11 antisense RNA 1 (tail to tail)122168111821682106Rat
1304681Abhd11abhydrolase domain containing 11122168220621685331Rat
68425Cldn3claudin 3122170853821710010Rat
41401627Rps13-ps6ribosomal protein S13, pseudogene 6122171220021715310Rat
1585449Arpc5l-ps3actin related protein 2/3 complex, subunit 5-like, pseudogene 3122173477521735623Rat
1307932Cldn4claudin 4122175163821753436Rat
1588881Mettl27methyltransferase like 27122175754521766698Rat
9242288LOC103691506claudin-4-like122177606621776722Rat
41255513LOC120095920uncharacterized LOC120095920122179357721800351Rat
1561903Tmem270transmembrane protein 270122179363121798723Rat
7520086LOC102553484uncharacterized LOC102553484122196238721969793Rat
67394Elnelastin122196854422011929Rat
62055Limk1LIM domain kinase 1122202669722060605Rat
11405154LOC10835248440S ribosomal protein S14 pseudogene122206842522069114Rat
1359222Eif4heukaryotic translation initiation factor 4H122208315522099876Rat
631397Lat2linker for activation of T cells family, member 2122210417322118294Rat
621198Rfc2replication factor C subunit 2122212044922133576Rat
7689818LOC102553558uncharacterized LOC102553558122213845522140424Rat
1583827Chmp5-ps3charged multivesicular body protein 5, pseudogene 3122214657622147671Rat
1563240Ervfrd-1endogenous retrovirus group FRD member 1, envelope122215121122158264Rat
62019Clip2CAP-GLY domain containing linker protein 2122216304422227023Rat
620856Gtf2ird1GTF2I repeat domain containing 1122225411322361052Rat
727961Gtf2igeneral transcription factor II I122240093322476243Rat
9311981LOC103691302uncharacterized LOC103691302122247302922487591Rat
61307Ncf1neutrophil cytosolic factor 1122248538222494647Rat
1307435Gtf2ird2GTF2I repeat domain containing 2122249776722536455Rat
1307558Rcc1lRCC1 like122254312522574042Rat
1304672Castor2cytosolic arginine sensor for mTORC1 subunit 2122257750422620182Rat
7587101LOC102553721uncharacterized LOC102553721122262846522635776Rat
40965707LOC120096096U6 spliceosomal RNA122276037022760469Rat
6488308Rpsa-ps7ribosomal protein SA, pseudogene 7122279671522803092Rat
40951983LOC120095854uncharacterized LOC120095854122280502222815570Rat
41319237LOC120095855uncharacterized LOC120095855122285966222867915Rat
41001183LOC120095924uncharacterized LOC120095924122293268922945250Rat
40992997LOC120095926uncharacterized LOC120095926122322144823319564Rat
41373117LOC120095927uncharacterized LOC120095927122341717523434982Rat
11435442LOC108352438uncharacterized LOC108352438122366574023707081Rat
7489014Mir6322microRNA 6322122378000123780119Rat
41166140Rps29-ps4ribosomal protein S29, pseudogene 4122379983923800137Rat
41344750Pnp-ps1purine nucleoside phosphorylase, pseudogene 1122389459123895813Rat
2323959Auts2activator of transcription and developmental regulator AUTS2122410418725194123Rat
40964822LOC120095842uncharacterized LOC120095842122496547324968048Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122532323025781897Rat
7684404LOC102550645uncharacterized LOC102550645122580013725805997Rat
1305843Caln1calneuron 1122581174326303670Rat
41342002Rps15a-ps5ribosomal protein S15a, pseudogene 5122613335726138348Rat
41391291Trnas-aga21transfer RNA serine (anticodon AGA) 21122614549226145564Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122633202026418286Rat
41132218Ifitm1-ps2interferon induced transmembrane protein 1, pseudogene 2122639569326395896Rat
1311043SbdsSbds, ribosome maturation factor122642041026429650Rat
1303319Tmem248transmembrane protein 248122643077526457105Rat
41387608Trnal-aag19transfer RNA leucine (anticodon AAG) 19122645849526458569Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122645919026503790Rat
1582914Kctd7potassium channel tetramerization domain containing 7122652096926532327Rat
1308473Tpst1tyrosylprotein sulfotransferase 1122654453626605706Rat
620753CrcpCGRP receptor component122662396826659756Rat
619974Aslargininosuccinate lyase122665966426677136Rat
41266323LOC120096116small nucleolar RNA SNORA17122668094826681081Rat
41387478Trnat-agu12transfer RNA threonine (anticodon AGU) 12122668978826689862Rat
1598198Rps9-ps15ribosomal protein S9, pseudogene 15122669235326698674Rat
41014265LOC120096125small nucleolar RNA SNORA81122669321226693392Rat
41161287LOC120096127small nucleolar RNA SNORA81122669615026696237Rat
2772Gusbglucuronidase, beta122670118826714718Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1122671795926768193Rat
41114360Trnaa-agc84transfer RNA alanine (anticodon AGC) 84122676349126763563Rat
1560258Nupr2nuclear protein 2, transcriptional regulator122680012326803228Rat
1559988Zbed5zinc finger BED-type containing 5122680765226813706Rat
7646482LOC102555557MLV-related proviral Env polyprotein-like122682069126822694Rat
6496638Chchd2coiled-coil-helix-coiled-coil-helix domain containing 2122682873826834762Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1122683882226854547Rat
1563253Sumf2sulfatase modifying factor 2122685356126871835Rat
40968761LOC120095933uncharacterized LOC120095933122686188326865773Rat
1304763Cct6achaperonin containing TCP1 subunit 6A122687273626883125Rat
41308945LOC120096108small nucleolar RNA SNORA15122687576126875891Rat
41347348Snora22csmall nucleolar RNA, H/ACA box 22C122688078826880922Rat
1308764Psphphosphoserine phosphatase122688252426905084Rat
1566421Nipsnap2nipsnap homolog 2122690606826944201Rat
41142329LOC120095934uncharacterized LOC120095934122690948126917294Rat
40971147LOC120096123small nucleolar RNA SNORA76122692392026924065Rat
1307650Mrps17mitochondrial ribosomal protein S17122694853526951828Rat
1596186Septin14septin 14122697528327005588Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene122702189927022580Rat
2324824Zfp11zinc finger protein 11122702806727040846Rat
1311541Mmp17matrix metallopeptidase 17122707439827099317Rat
41053934LOC120095935uncharacterized LOC120095935122707716627079043Rat
1305004Sfswapsplicing factor SWAP122710960727179941Rat
7689144LOC102555340uncharacterized LOC102555340122731604127324144Rat
1594795Adgrd1adhesion G protein-coupled receptor D1122748890827603714Rat
1594781Atp5mfl1ATP synthase membrane subunit f like 1122761224627612664Rat
40947512LOC120095936uncharacterized LOC120095936122761394627623220Rat
40980827LOC120095938uncharacterized LOC120095938122763696527640093Rat
41096920LOC120095937uncharacterized LOC120095937122763709427645516Rat
41134391LOC120095939uncharacterized LOC120095939122765388027659897Rat
620367RanRAN, member RAS oncogene family122767404927678598Rat
2558Stx2syntaxin 2122767874427714751Rat
708533Rimbp2RIMS binding protein 2122774761527946256Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1122794974327970645Rat
11518793LOC108352441uncharacterized LOC108352441122797074527974390Rat
1583825Fzd10frizzled class receptor 10122809837128101566Rat
11406627Rps20-ps3ribosomal protein S20, pseudogene 3122814558828146353Rat
41145714LOC120095942uncharacterized LOC120095942122824438928263727Rat
735062Tmem132dtransmembrane protein 132D122827003928917324Rat
40950631LOC120095943uncharacterized LOC120095943122830924128329042Rat
41395086LOC120095944uncharacterized LOC120095944122878925528791052Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1122897598429049707Rat
708469Slc15a4solute carrier family 15 member 4122904863429082480Rat
1583824Tmem132ctransmembrane protein 132C122911521329437900Rat
11472079LOC108352443uncharacterized LOC108352443122914059329146192Rat
41181629Tmem254-ps1transmembrane protein 254, pseudogene 1122939753429414987Rat
41348602LOC120095946uncharacterized LOC120095946122946757229469165Rat
41154964LOC120096083U2 spliceosomal RNA122946950029469687Rat
1559821Myl6l2myosin light chain 6 like 2122948809129488746Rat
41083776LOC120095947uncharacterized LOC120095947122950898329528608Rat
9386528Rpl7-ps7ribosomal protein L7, pseudogene 7122955463029556108Rat
11457842LOC108352444uncharacterized LOC108352444122960951429611696Rat
9188281LOC103691337uncharacterized LOC103691337122964621429652464Rat
41351787LOC120095949uncharacterized LOC120095949122973060929736279Rat
41235196LOC120095951uncharacterized LOC120095951122986393629869460Rat
41366922LOC120095952uncharacterized LOC120095952122988752429899402Rat
11363226LOC108352445uncharacterized LOC108352445122995068830009315Rat
2324513Mrpl23-ps1mitochondrial ribosomal protein L23, pseudogene 1123012462230125050Rat
7668786LOC102549552uncharacterized LOC102549552123014630830148665Rat
41213846LOC120095956uncharacterized LOC120095956123014922730154629Rat
11405284LOC108352488uncharacterized LOC108352488123018629430194578Rat
1592278Frg1l1FSHD region gene 1-like 1123026902130269933Rat
11493793LOC108352502uncharacterized LOC108352502123038801030409963Rat
40974416LOC120095960uncharacterized LOC120095960123068444330713892Rat
40960683Rpl19-ps16ribosomal protein L19, pseudogene 16123081244130813107Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
44950D12Wox5116121363552313635658Ratregion
5077440RH139757198121375786613758064Ratregion
5059550BE097282181121387536513875546Ratregion
5079716RH141162186121388277713882963Ratregion
5056145RH144209101121388348313883584Ratregion
5040488RH128312186121388585113886037Ratregion
5074978RH138328140121388657013886710Ratregion
5054941RH143514267121388870213888969Ratregion
5075490RH138624150121388883413888984Ratregion
44954D12Got29279121392476113925040Ratregion
5078464RH140358187121393744713937634Ratregion
5046776RH131948184121398239313982577Ratregion
5032271AI414930135121402509714025232Ratregion
5084938AI236775145121403057014031271Ratregion
5057806BI277157205121408246714082860Ratregion
5051405AI595374154121411065214110806Ratregion
5499901UniSTS:235351167121411079914110966Ratregion
5029191RH143860165121411084014111005Ratregion
5040348RH128231197121419649614196693Ratregion
5045782RH131376209121429998614300195Ratregion
44956D12Got30158121446396714464125Ratregion
5044918RH130878153121463052714630680Ratregion
5500551RH135954170121472489314725063Ratregion
5031570AU047888216121479276414792980Ratregion
5067214AU047892255121479276414793019Ratregion
5040418RH128272208121481196614812174Ratregion
5502686Tmem184a0121482930314829966Ratregion
5072682RH136991220121483285614833076Ratregion
5501387Mafk588121483465614835244Ratregion
5058676BI284461184121483505314835238Ratregion
5504789UniSTS:2741821383121483659514837978Ratregion
5503986UniSTS:2571050121483699514837963Ratregion
5505466UniSTS:530587421121487436114874782Ratregion
5079044RH140702206121488579114885997Ratregion
5081016RH141916184121488585914886043Ratregion
5067182AU047911207121494228014942487Ratregion
33725D12Mit1259121502494215025183Ratregion
38094D12Rat47209121507055115070761Ratregion
5074172RH137863142121508424415084386Ratregion
5088139Uncx4.198121509279115092889Ratregion
7206646Uncx762121509328415094046Ratregion
5045500RH131214150121517246215172612Ratregion
5050558RH134125189121521725315217442Ratregion
5063520BE107745162121522979215229954Ratregion
5046828RH131978185121525209915252284Ratregion
5081388AI454263194121531086415311058Ratregion
5090261AU049646126121531128715311413Ratregion
5049310RH133407186121531262315312809Ratregion
62471D2Uia1271121531710015317367Ratregion
5046324RH131687211121537579615376007Ratregion
5039900RH127972197121537703715377234Ratregion
5025366RH128037199121537784015378039Ratregion
5052767RH142261173121539647415396647Ratregion
5044570RH130679182121539647415396656Ratregion
5499895UniSTS:235349192121539658615396778Ratregion
5065274BE121325159121541681815416977Ratregion
5038900RH127397183121545384115454024Ratregion
5502918Prkar1b751121562410215624853Ratregion
5047598RH132420208121562464215624850Ratregion
5050348RH134004190121564244215642632Ratregion
5060396AW525445170121564519015645360Ratregion
37272D12Rat28120121580606515806191Ratregion
5505116LOC783396150121581353015813680Ratregion
5045060RH130960182121582687915827061Ratregion
40408D12Rat91160121587265315872803Ratregion
5065714BF406262207121589157615891783Ratregion
5075028RH138357220121597935815979578Ratregion
5050418RH134045201121603969416039895Ratregion
5064902BE108699150121624945616249606Ratregion
5043508RH130065196121630434816304544Ratregion
5046526RH131804181121631043316310614Ratregion
5041142RH128686150121631792416318074Ratregion
44962D12Got36139121637919316379328Ratregion
5060020BF400282137121642471516424853Ratregion
5086535AW529990171121643362116433792Ratregion
5068848AU046888175121668258616682756Ratregion
5047648RH132448181121676227916762460Ratregion
5045860RH131420212121676377616763988Ratregion
5026390RH132022208121680627916806487Ratregion
5056215RH144250222121689725716897479Ratregion
44959D12Got34207121690215316902360Ratregion
5080834RH141809180121690761816907812Ratregion
5062218BF397585213121691167316911886Ratregion
629605D12Hmgc1181121693293516933106Ratregion
5070191RH94525173121693691216937085Ratregion
5075242RH138481168121693730316937471Ratregion
5027309C87323158121698237116982529Ratregion
5082587BF416395169121698410416984273Ratregion
5076140RH139002205121698743016987635Ratregion
5502307RH124339154121698989516990049Ratregion
5502307RH124339154121698989516990049Ratregion
5049386RH133451216121701325417013470Ratregion
5065320BE121431161121701953117019692Ratregion
5031169BE116815180121702291417023094Ratregion
5077384RH139725204121704189017042094Ratregion
5040018RH128042210121704236017042716Ratregion
5500240AI747533103121704270517043542Ratregion
5073004RH137179181121705597317056154Ratregion
5065718BF406289115121705720617057321Ratregion
5063286BI301666185121706271417062900Ratregion
44960D12Got35142121709872117098867Ratregion
44963D12Got32176121709874417098921Ratregion
5041864RH129103181121726217117262352Ratregion
5061796AW533576155121726801617268171Ratregion
37318D12Rat29150121731067817310845Ratregion
5044526RH130654157121736540517365562Ratregion
5088579AU048654176121742593117426107Ratregion
5499615MARC_2660-2661:991933047:1307121773349017733786Ratregion
5504314D12S1240E100121773411417734214Ratregion
5499615MARC_2660-2661:991933047:1307121775689317757189Ratregion
5504314D12S1240E100121775751717757617Ratregion
502792734.MMHAP64FRD10.seq167121783206317832230Ratregion
5029597BF39272691121823055218230643Ratregion
502792734.MMHAP64FRD10.seq167121826180818261975Ratregion
5683882D12Hmgc5193121837715918377352Ratregion
5047034RH132096181121862447318624655Ratregion
5029597BF39272691121866157218661663Ratregion
5499615MARC_2660-2661:991933047:1307121882122918821524Ratregion
5499615MARC_2660-2661:991933047:1307121883832518838621Ratregion
5504314D12S1240E100121883894918839049Ratregion
1639781D12Got226103121885849018858588Ratregion
5029583BE101310183121891477118914954Ratregion
5038642C7881584121891612518916209Ratregion
5036229RH125705271121891612718916398Ratregion
5052771RH142264200121891628218916482Ratregion
5035172AW535112158121891724618917404Ratregion
5045482RH131203181121891808518918266Ratregion
5072352RH136799122121893095418931076Ratregion
5052917RH142348187121893931618939503Ratregion
5049214RH133351202121893935518939557Ratregion
5054111RH143037258121894651918946777Ratregion
5058468BI290373119121904175919041878Ratregion
5077820RH139978188121904339719043585Ratregion
5073650RH137560171121904820619048377Ratregion
5504742PMC86565P2601121905335319053954Ratregion
5026248RH131481203121905506519055268Ratregion
5052035RH94802159121905508519055244Ratregion
5080384RH141548208121905818219058390Ratregion
5502066MARC_26575-26576:1033748265:10121909595319096548Ratregion
5039264RH127606214121909906119099369Ratregion
5502126MARC_5081-5082:996690120:1683121912715019127833Ratregion
5505961Gnb2390121916298219163459Ratregion
5032677RH134888187121918832419188511Ratregion
5030377AI029876207121919015919190366Ratregion
5683884D12Hmgc6121921261419212979Ratregion
5683884D12Hmgc6121921274219212979Ratregion
5063112BE113733168121921674619216914Ratregion
5042134RH129259153121932655619326709Ratregion
5501724UniSTS:266994207121932685119327058Ratregion
5065020BF405489221121937333519373556Ratregion
5078632RH140457187121938544919385636Ratregion
5043758RH130210195121940742319407618Ratregion
5505360Ache1290121941012219411412Ratregion
5503556UniSTS:463940304121941027519410579Ratregion
5089193AU049010210121953746719537677Ratregion
5064588BF399394153121956683219566985Ratregion
44968D12Got39155121958899819589153Ratregion
5069268AU046608248121960177419601850Ratregion
5501175PMC15197P30121960956619610072Ratregion
5053041RH142420213121961038119610594Ratregion
11051D12Mit2217121961087019611091Ratregion
11052D12Wox11196121961088619611090Ratregion
11053D12Wox12198121961088919611095Ratregion
5070281RH94577178121961122919611407Ratregion
5042866RH1296920121961138519611585Ratregion
5082163BI280199151121963525119635402Ratregion
5499899UniSTS:235344206121963543119635637Ratregion
41384D12Rat70154121964216619642312Ratregion
60012D12Got105128121966594319666071Ratregion
5048172RH132750204121966882219669213Ratregion
5052777RH142267176121969243419692767Ratregion
5052877RH142325199121970860219708801Ratregion
5053831RH142876162121972227819722440Ratregion
5057524AW522797179121973677219736951Ratregion
5076376RH139139184121976060319760787Ratregion
5061170BE099159165121976230319762468Ratregion
44967D12Got41157121981117419811331Ratregion
34417D12Mgh2163121983578919835952Ratregion
44965D12Got40230121986903919869269Ratregion
36538D12Rat7161121994867819948839Ratregion
40702D12Rat69211121995043219950632Ratregion
5026664RH133068206122011796220118168Ratregion
5090807AU049974208122017595020176158Ratregion
60016D12Got43159122021785420218013Ratregion
5065682BF41274694122028856420288658Ratregion
5067440AU047743166122031501620315182Ratregion
5064398BF411168226122033705820337284Ratregion
5063976BE120355168122040815620408325Ratregion
5043588RH130111182122040972020409902Ratregion
5077140RH139585207122042537620425583Ratregion
5032014AU046360137122042936920429506Ratregion
5053113RH142461223122043796120438184Ratregion
5071600RH135176180122048822720488407Ratregion
5041840RH129089153122049162220491775Ratregion
5086787BE107332214122051587620516090Ratregion
5035701WI-1509899122051691720517016Ratregion
5044092RH130405184122052007820520262Ratregion
5081258RH142057192122052421920524411Ratregion
5047170RH132174220122054270220543016Ratregion
5051014RH134388193122054331420544059Ratregion
5506270GDB:458569784122054586220545946Ratregion
5038976RH127441189122055290720553096Ratregion
5065400AA95750490122056478220564872Ratregion
7193095AA957504192122056484220565034Ratregion
5056941RH144669170122062949720629667Ratregion
5045390RH131150198122063030020630498Ratregion
5027307AI957187130122063042920630559Ratregion
5057674BE101305210122063109820631323Ratregion
5044998RH130924195122063324720633442Ratregion
5025010AU022494218122064331020643528Ratregion
5043946RH130322189122064332520643514Ratregion
5043946RH130322189122064332520643514Ratregion
5048412RH132889186122071847020718656Ratregion
5050030RH133822180122072445920724639Ratregion
5083337BF417900202122076495320765155Ratregion
5030109BE098443174122077106320771237Ratregion
5073154RH137270199122077129120771490Ratregion
5053021RH142408193122077129820771491Ratregion
5503867SSC3D06197122077254720772744Ratregion
42965D12Rat92248122078029620780530Ratregion
5042942RH129737159122079408320794242Ratregion
5036352Hsp25216122079414120794468Ratregion
7206212Hspb1408122079427720795457Ratregion
5088299AU048487168122079838820799310Ratregion
5088299AU048487168122079914220799310Ratregion
5061024BF389756218122081645220816670Ratregion
5085709BE101960176122081933920819515Ratregion
5058056BF386509150122082571220825862Ratregion
5076630RH139287223122084514020845363Ratregion
44973D12Got103249122087451320874764Ratregion
1629647D12Got220119122088154520881664Ratregion
5053073RH142438176122089429520894468Ratregion
10888D12Wox1092122089438020894469Ratregion
5039492RH127736213122089444920894990Ratregion
5035208BM390639203122089592320896126Ratregion
5499663MARC_6945-6946:992007577:2582122094952920950111Ratregion
5087446PMC180925P1753122095603620956789Ratregion
5072234RH136731142122103984321039985Ratregion
5082979BF390551160122111409721114257Ratregion
44969D12Got102135122111996721120102Ratregion
5031165BE116737176122114569821145874Ratregion
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35433D12Rat17149123082724630827399Ratregion
Position Markers

Flank 1: (D12Wox5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21213,635,523 - 13,635,658 (+)MAPPER
Rnor_6.01215,714,609 - 15,714,743NCBI
Rnor_5.01217,721,341 - 17,721,475UniSTS
Celera1215,396,902 - 15,397,046UniSTS
RH 3.4 Map12175.8RGD
RH 3.4 Map12175.8UniSTS
RH 2.0 Map12146.0RGD
Cytogenetic Map12q11UniSTS
Peak: (D12Wox14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21222,003,428 - 22,003,586 (+)MAPPER
Rnor_6.01225,013,364 - 25,013,521NCBI
Rnor_5.01227,013,985 - 27,014,142UniSTS
RGSC_v3.41223,068,543 - 23,068,700UniSTS
Celera1223,767,713 - 23,767,870UniSTS
Cytogenetic Map12q12UniSTS
Flank 2: (D12Rat17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21230,827,246 - 30,827,399 (+)MAPPER
Rnor_6.01235,964,360 - 35,964,508NCBI
Rnor_5.01237,844,288 - 37,844,419UniSTS
Celera1232,526,311 - 32,526,463UniSTS
RH 3.4 Map12491.1UniSTS
RH 3.4 Map12491.1RGD
RH 2.0 Map12366.9RGD
SHRSP x BN Map1239.88RGD
FHH x ACI Map1229.63RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia4

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_gene 56 known and 11 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Ncf1 as RA associated gene and Ncf1 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general associates with the arthritis severity; extensive joint erosin, as measured by serum levels of cartilage oligomeric matrix protein (COMP), was linked to the same region 61089
qtl_general this QTL is reproduced with high significance by the generation of congenic strain 631850