Scwia1 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Scwia1 (Streptococcal cell wall induced arthritis QTL 1) Rattus norvegicus

Symbol: Scwia1
Name: Streptococcal cell wall induced arthritis QTL 1
RGD ID: 61406
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: experimental arthritis severity measurement   (CMO:0001459)    
LOD Score: 2.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04105,682,594 - 150,682,594RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04171,606,455 - 216,606,455RGDRnor5.0
RGSC_v3.4473,972,453 - 154,937,227RGDRGSC3.4
RGSC_v3.1474,248,583 - 155,182,068RGD
Cross Type: F2
Strains Crossed: LEW F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Npy is a candidate Gene for Scwia1
Tcrb is a candidate Gene for Scwia1

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NRrrc  (IEA)
LEW  (IEA)

References

References - curated
1. Wilder RL, etal., Transplant Proc 1999 May;31(3):1585-8
2. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
Related QTLs

Related QTL Description Reference
Eau1 maps to same region RGD:61064
Aia3 maps to same region RGD:61064
Cia3 maps to same region RGD:61064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2320685LOC100361176solute carrier family 25, member 394105707513105708605Rat
1585901LOC679688hypothetical protein LOC6796884105924927105939707Rat
7640293LOC102554402high mobility group protein B1-like4106076155106076798Rat
11051999LOC684133Ig kappa chain V-V region HP 123E6-like4106352500106362103Rat
2316392Vom1r-ps76vomeronasal 1 receptor pseudogene 764106871463106872247Rat
2320349LOC100361316hypothetical LOC1003613164106982479106983306Rat
11474954LOC108350867igE-binding protein-like4107133757107138178Rat
11402703LOC10835081760S ribosomal protein L27a-like4107330018107340567Rat
1584754LOC679788similar to ribosomal protein L64107442942107446479Rat
1305060Ctnna2catenin alpha 24107880611109042724Rat
1585921LRRTM1leucine rich repeat transmembrane neuronal 14108300927108316373Rat
11518322LOC108350841uncharacterized LOC1083508414108471612108495151Rat
1583643LOC679846hypothetical protein LOC6798464109050643109142960Rat
11385872LOC108350868glyceraldehyde-3-phosphate dehydrogenase pseudogene4109222968109223956Rat
3254Reg3bregenerating family member 3 beta4109467272109470510Rat
2319874LOC100361595hypothetical LOC1003615954109473140109475570Rat
621401Reg3aregenerating islet-derived 3 alpha4109477893109480659Rat
3552Reg1aregenerating family member 1 alpha4109497962109500626Rat
7688358LOC102556035uncharacterized LOC1025560354109521653109546592Rat
3256Reg3gregenerating family member 3 gamma4109529679109532234Rat
7552576LOC102546411syntaxin-binding protein 3-like4109654109109658999Rat
7708743LOC102556090uncharacterized LOC1025560904109675683109681109Rat
1560707Lrrtm4leucine rich repeat transmembrane neuronal 44110699577111497643Rat
11394131LOC108350843uncharacterized LOC1083508434111213643111243451Rat
11492979LOC108350842uncharacterized LOC1083508424111258784111413055Rat
7538165LOC102549600uncharacterized LOC1025496004111434832111444699Rat
1586028LOC500220similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)4111506069111508337Rat
1595483LOC680141hypothetical protein LOC6801414111566218111566807Rat
1586001LOC502850similar to mannose-6-phosphate receptor binding protein 14111929956111931270Rat
1594207LOC680224similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2)4112357036112357666Rat
6493044LOC100911370uncharacterized LOC1009113704112641827112645315Rat
1304792Gcfc2GC-rich sequence DNA-binding factor 24112662556112700505Rat
1587381Mrpl19mitochondrial ribosomal protein L194112703041112707270Rat
1559797Eva1aeva-1 homolog A, regulator of programmed cell death4112714023112823659Rat
7719052LOC102547556uncharacterized LOC1025475564112739237112759385Rat
7520921LOC102547617peroxiredoxin-6-like4112864026112884722Rat
6491861Rps27a-ps17ribosomal protein S27a, pseudogene 174113222490113223031Rat
3811Tacr1tachykinin receptor 14113247236113416139Rat
1307793Pole4DNA polymerase epsilon 4, accessory subunit4113491644113497455Rat
7711844LOC102547728uncharacterized LOC1025477284113497559113502453Rat
2797Hk2hexokinase 24113559396113609897Rat
1592965Rps27a-ps18ribosomal protein S27a, pseudogene 184113679590113680131Rat
3658Sema4fssemaphorin 4F4113738225113764532Rat
1563842M1apmeiosis 1 associated protein4113772716113864171Rat
1596846LOC680041similar to 40S ribosomal protein S254113800635113801094Rat
7638586LOC10254916260S ribosomal protein L9-like4113808078113808639Rat
1309499Dok1docking protein 14113864211113866695Rat
1311011Loxl3lysyl oxidase-like 34113866782113883713Rat
1308906Htra2HtrA serine peptidase 24113883671113886833Rat
1591777Aup1AUP1, lipid droplet regulating VLDL assembly factor4113887030113890103Rat
1591766Dqx1DEAQ box RNA-dependent ATPase 14113890201113899355Rat
1549782Pcgf1polycomb group ring finger 14113911129113913718Rat
1561172Lbx2ladybird homeobox 24113918680113920565Rat
1561779Ccdc142coiled-coil domain containing 1424113933466113941297Rat
1306709Mrpl53mitochondrial ribosomal protein L534113942037113942927Rat
2322824LOC100363523hypothetical LOC1003635234113943994113945047Rat
69240Mogsmannosyl-oligosaccharide glucosidase4113948328113951731Rat
1304961Wbp1WW domain binding protein 14113951873113954272Rat
1562258Ino80bINO80 complex subunit B4113954612113957774Rat
11518313LOC108350719uncharacterized LOC1083507194113966643113969597Rat
9129186LOC103692165rhotekin4113967384113984636Rat
9477816LOC103692166WD repeat-containing protein 544113984754113988487Rat
7631689LOC10255319460S ribosomal protein L7a-like4114042424114043224Rat
9337606LOC103692182ATP-dependent RNA helicase DQX1-like4114747607114765200Rat
1595506Tlx2T-cell leukemia homeobox 24114766401114768243Rat
9188290LOC103692167polycomb group RING finger protein 14114776680114779447Rat
9451642LOC103692168transcription factor LBX24114781754114786299Rat
9266814LOC103692170coiled-coil domain-containing protein 1424114799194114807025Rat
9457461LOC10369216939S ribosomal protein L53, mitochondrial4114807495114808659Rat
9080732LOC10369218360S ribosomal protein L23 pseudogene4114809722114810775Rat
9236907LOC103692171mannosyl-oligosaccharide glucosidase4114813988114817463Rat
9309531LOC103692173WW domain-binding protein 14114817601114819959Rat
9421107NEWGENE_1562258INO80 complex subunit B4114819232114823838Rat
11449712LOC108350720uncharacterized LOC1083507204114832712114835666Rat
727874Rtknrhotekin4114833453114850705Rat
1561494Wdr54WD repeat domain 544114847722114871989Rat
1566019LOC500227hypothetical gene supported by BC0794244114854449114860678Rat
62038Dctn1dynactin subunit 14114876770114896567Rat
7718040LOC102548304uncharacterized LOC1025483044114881322114885927Rat
1303009Slc4a5solute carrier family 4 member 54114918488115002290Rat
9126671LOC103692174uncharacterized LOC1036921744114979130114987846Rat
1311313Mthfd2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase4115004433115015965Rat
1307014Mob1aMOB kinase activator 1A4115024927115041904Rat
1305975Bola3bolA family member 34115046693115056140Rat
1590584Tet3tet methylcytosine dioxygenase 34115060702115160800Rat
7650908LOC102548361uncharacterized LOC1025483614115143413115154202Rat
1304799Dguokdeoxyguanosine kinase4115180433115208061Rat
2027Actg2actin gamma 2, smooth muscle4115215160115239746Rat
619963StambpStam binding protein4115249343115277340Rat
621062Clec4fC-type lectin domain family 4, member F4115322300115332021Rat
1565913Cd207CD207 molecule4115333124115355034Rat
9389444LOC103692184glyceraldehyde-3-phosphate dehydrogenase pseudogene4115355207115388533Rat
11402107LOC108350818uncharacterized LOC1083508184115379134115386903Rat
621133Vax2ventral anterior homeobox 24115388839115412515Rat
11488278LOC108350721uncharacterized LOC1083507214115404314115408911Rat
1310619Atp6v1b1ATPase H+ transporting V1 subunit B14115417100115435754Rat
1561200Ankrd53ankyrin repeat domain 534115439325115447995Rat
1305851Tex261testis expressed 2614115446830115454035Rat
11437638LOC10835072260S ribosomal protein L27 pseudogene4115462918115473665Rat
7729408LOC10255425660S ribosomal protein L27-like4115471341115472967Rat
1305057NagkN-acetylglucosamine kinase4115473848115485027Rat
1307930Paip2bpoly(A) binding protein interacting protein 2B4115484676115516307Rat
1309746Zfp638zinc finger protein 6384115555185115690272Rat
1586000LOC502853similar to 40S ribosomal protein S15 (RIG protein)4115572975115573488Rat
1311023Dysfdysferlin4115700942115901873Rat
9122976LOC103692175uncharacterized LOC1036921754115953874115976638Rat
11421296LOC10835086960S ribosomal protein L31 pseudogene4116132266116132772Rat
631379Cyp26b1cytochrome P450, family 26, subfamily b, polypeptide 14116261796116278615Rat
1560638Exoc6bexocyst complex component 6B4116314695116786466Rat
1585860LOC680929similar to serine/threonine kinase4116805256116806586Rat
7581904LOC102554508uncharacterized LOC1025545084116831236116839280Rat
7688339LOC102554699uncharacterized LOC1025546994116857807116872666Rat
11435431LOC108350724sperm motility kinase X-like4116862310116882056Rat
11472036LOC108350723UPF0587 protein C1orf123 homolog pseudogene4116869145116876378Rat
7524941LOC102554796uncharacterized LOC1025547964116883169116904635Rat
3753Sprsepiapterin reductase4116912343116916073Rat
1560795RGD1560795similar to Sepiapterin reductase (SPR)4116933277116936466Rat
1564002Emx1empty spiracles homeobox 14116967646116984136Rat
628706Sfxn5sideroflexin 54116995238117111548Rat
1592069Rab11fip5RAB11 family interacting protein 54117113067117154495Rat
1584703LOC681041similar to Argininosuccinate synthase (Citrulline--aspartate ligase)4117158492117172731Rat
1562910Notonotochord homeobox4117206355117210856Rat
1309153Smyd5SMYD family member 54117215064117229873Rat
1583112Pradc1protease-associated domain containing 14117230523117235496Rat
1306422Cct7chaperonin containing TCP1 subunit 74117235023117252265Rat
1566130Fbxo41F-box protein 414117255143117285228Rat
2546Egr4early growth response 44117293620117296082Rat
1311590Alms1ALMS1, centrosome and basal body associated protein4117371544117472310Rat
9142253LOC103692181nuclease-sensitive element-binding protein 1 pseudogene4117379561117380587Rat
9128058LOC103692176uncharacterized LOC1036921764117417914117422642Rat
621607Nat8f3N-acetyltransferase 8 (GCN5-related) family member 34117488089117492315Rat
621610Nat8f5N-acetyltransferase 8 (GCN5-related) family member 54117506731117531480Rat
1586026LOC500236similar to elastin microfibril interfacer 14117508795117512811Rat
621609Nat8N-acetyltransferase 84117525963117527443Rat
2324329LOC100362629camello-like 44117550582117552858Rat
6496154LOC100910829probable N-acetyltransferase CML2-like4117566557117569126Rat
7567030LOC102556148probable N-acetyltransferase CML2-like4117572665117578340Rat
621606Nat8f1N-acetyltransferase 8 (GCN5-related) family member 14117582779117589464Rat
1309786TprkbTp53rk binding protein4117589527117604481Rat
621605Nat8bN-acetyltransferase 8B4117606022117607366Rat
1307038Dusp11dual specificity phosphatase 114117617640117631674Rat
7547913LOC102549328uncharacterized LOC1025493284117649961117663174Rat
1564754Figlafolliculogenesis specific bHLH transcription factor4117679256117683618Rat
2042Add2adducin 24117691294117887556Rat
7712970LOC102549703uncharacterized LOC1025497034117733588117745562Rat
1561619Nat8f2N-acetyltransferase 8 (GCN5-related) family member 24117749538117752107Rat
7636572Nat8f4N-acetyltransferase 8 (GCN5-related) family member 44117755646117760096Rat
9097619LOC103690120probable N-acetyltransferase CML14117766954117772428Rat
9395731LOC103690067EKC/KEOPS complex subunit Tprkb4117772510117787465Rat
9150396LOC103690139probable N-acetyltransferase CML64117788998117793806Rat
9168966LOC103690006RNA/RNP complex-1-interacting phosphatase4117797735117814732Rat
9120810LOC103692177uncharacterized LOC1036921774117832945117839060Rat
3849Tgfatransforming growth factor alpha4117961877118045923Rat
11502286LOC108350725uncharacterized LOC1083507254118125178118130525Rat
6486422LOC100912595katanin p80 WD40-containing subunit B1-like4118134312118135193Rat
1596714LOC681376similar to katanin p80 (WD40-containing) subunit B 14118146585118147466Rat
1304825Fam136afamily with sequence similarity 136, member A4118160147118166062Rat
1584713Snrpgsmall nuclear ribonucleoprotein polypeptide G4118167267118174846Rat
628652Pcyox1prenylcysteine oxidase 14118187133118198029Rat
11508600Trnag-ccc4transfer RNA glycine (anticodon CCC) 44118207496118207566Rat
1305742Tia1TIA1 cytotoxic granule-associated RNA binding protein4118207845118238246Rat
1306746RGD1306746similar to Hypothetical protein MGC255294118240681118271771Rat
7589793LOC102554318uncharacterized LOC1025543184118314971118320831Rat
1561319Pcbp1poly(rC) binding protein 14118327185118329223Rat
7500259LOC102554481uncharacterized LOC1025544814118330044118340122Rat
1584384LOC684976hypothetical protein LOC6849764118341934118342930Rat
7667063LOC102554372uncharacterized LOC1025543724118373031118385223Rat
1560859Asprv1aspartic peptidase, retroviral-like 14118431755118433286Rat
1564525Mxd1max dimerization protein 14118451752118472150Rat
1310925Snrnp27small nuclear ribonucleoprotein U4/U6.U5 subunit 274118478075118487633Rat
1359265Gmcl1germ cell-less 1, spermatogenesis associated4118494997118534301Rat
621171Anxa4annexin A44118538775118595591Rat
9276610LOC103692178uncharacterized LOC1036921784118599778118632286Rat
1305520Aak1AP2 associated kinase 14118653851118806796Rat
2322888LOC100360057ribosomal protein L22-like4118705191118705687Rat
1307823Nfu1NFU1 iron-sulfur cluster scaffold4118814284118834955Rat
1549703Gfpt1glutamine fructose-6-phosphate transaminase 14118852046118901583Rat
7640703LOC102554877uncharacterized LOC1025548774118885395118889434Rat
1307144Antxr1ANTXR cell adhesion molecule 14118946267119131202Rat
11504247LOC108350726uncharacterized LOC1083507264118988428118991398Rat
1311934Gkn2gastrokine 24119131255119177329Rat
735014Gkn1gastrokine 14119143070119148358Rat
1597754Gkn3gastrokine 34119181970119188356Rat
7692651LOC102554941uncharacterized LOC1025549414119188353119194465Rat
1562986Bmp10bone morphogenetic protein 104119224906119230534Rat
1562105Arhgap25Rho GTPase activating protein 254119249682119327822Rat
708443Prokr1prokineticin receptor 14119375790119386551Rat
708395Vom1r101vomeronasal 1 receptor 1014119398004119400770Rat
708384Vom1r102vomeronasal 1 receptor 1024119465253119466286Rat
1565557Aplfaprataxin and PNKP like factor4119514822119568764Rat
2323785Cfap92cilia and flagella associated protein 924119572669119626852Rat
6497663LOC100910604uncharacterized LOC1009106044119632943119633551Rat
1596494Efcc1EF-hand and coiled-coil domain containing 14119633214119663081Rat
1561601Gp9glycoprotein IX (platelet)4119680671119682006Rat
1565300Rab43RAB43, member RAS oncogene family4119695012119714490Rat
1307688Isy1ISY1 splicing factor homolog4119721659119742349Rat
621807CnbpCCHC-type zinc finger, nucleic acid binding protein4119747890119756787Rat
2323735LOC100362958hypothetical LOC1003629584119764433119765427Rat
9124640LOC10369217960S ribosomal protein L34 pseudogene4119810755119811105Rat
1565292Copg1COPI coat complex subunit gamma 14119815041119840997Rat
1559800Hmces5-hydroxymethylcytosine binding, ES cell specific4119841088119864115Rat
11508794LOC108350727uncharacterized LOC1083507274119865784119877033Rat
1565596H1f10H1.10 linker histone4119889016119892661Rat
7650153LOC102552138uncharacterized LOC1025521384119895653119910825Rat
61908Rab7aRAB7A, member RAS oncogene family4119910461119963065Rat
3594Rpn1ribophorin I4119997232120018687Rat
1583218LOC685085similar to 40S ribosomal protein S254120040765120041256Rat
9252280LOC103692180uncharacterized LOC1036921804120054538120060839Rat
7562079LOC102554068uncharacterized LOC1025540684120064813120074394Rat
2664Gata2GATA binding protein 24120129028120142490Rat
1561981Dnajb8DnaJ heat shock protein family (Hsp40) member B84120156640120159708Rat
11455017LOC108350728uncharacterized LOC1083507284120163047120164389Rat
1562716Tcp1-ps1t-complex protein 1, pseudogene 14120180605120182231Rat
1560552Eefseceukaryotic elongation factor, selenocysteine-tRNA-specific4120194335120390203Rat
1592633LOC685514similar to ribosomal protein L364120403170120403551Rat
6493463LOC10091133740S ribosomal protein S25-like4120407800120408290Rat
68373Ruvbl1RuvB-like AAA ATPase 14120411917120447458Rat
6493053LOC10091137140S ribosomal protein S25-like4120413647120414138Rat
68321Sec61a1SEC61 translocon subunit alpha 14120453577120467932Rat
1585999Kbtbd12kelch repeat and BTB domain containing 124120492541120567755Rat
71039Mgllmonoglyceride lipase4120671436120773458Rat
7609272LOC102554878uncharacterized LOC1025548784120750833120752329Rat
1359363Abtb1ankyrin repeat and BTB domain containing 14120778580120784807Rat
1305815Podxl2podocalyxin-like 24120785494120817335Rat
1305577Mcm2minichromosome maintenance complex component 24120825699120840221Rat
620858Tpra1transmembrane protein adipocyte associated 14120843374120854534Rat
7696532LOC102554942uncharacterized LOC1025549424120881995120934151Rat
7591615LOC102555035uncharacterized LOC1025550354120944213120958941Rat
7550029LOC102555094uncharacterized LOC1025550944120993623120996241Rat
1591392Prr20eproline rich 20E4121040810121053910Rat
1560871Plxna1plexin A14121217658121262697Rat
1304561Chchd6coiled-coil-helix-coiled-coil-helix domain containing 64121340952121565222Rat
11431714LOC108350729glyceraldehyde-3-phosphate dehydrogenase pseudogene4121439306121440757Rat
1308363Txnrd3thioredoxin reductase 34121612332121650543Rat
9087191LOC103692185uncharacterized LOC1036921854121630814121632736Rat
1585998LOC502860hypothetical LOC5028604121658524121659443Rat
708509Vom1r90vomeronasal 1 receptor 904121675261121684264Rat
2323419LOC100363221hypothetical LOC1003632214121677926121679555Rat
7512196LOC102547820uncharacterized LOC1025478204121701430121706862Rat
1590235LOC685733similar to vomeronasal V1r-type receptor V1rb64121703480121704364Rat
1564573Vom1r92vomeronasal 1 receptor 924121758942121761699Rat
1549740Vom1r93vomeronasal 1 receptor 934121771681121779354Rat
1359098Vom1r94vomeronasal 1 receptor 944121810559121811539Rat
1359401Vom1r95vomeronasal 1 receptor 954121821837121822781Rat
2316391Vom1r-ps77vomeronasal 1 receptor pseudogene 774121848074121848968Rat
1549781Vom1r96vomeronasal 1 receptor 964121870699121871658Rat
708391Vom1r97vomeronasal 1 receptor 974121898248121900419Rat
2316390Vom1r-ps78vomeronasal 1 receptor pseudogene 784121906592121907419Rat
1549694Vom1r98vomeronasal 1 receptor 984121912352121913296Rat
2316389Vom1r-ps79vomeronasal 1 receptor pseudogene 794121931315121932132Rat
2316388Vom1r-ps80vomeronasal 1 receptor pseudogene 804121932963121933127Rat
1589006Vom1r99vomeronasal 1 receptor 994121968622121969446Rat
1549727Vom1r100vomeronasal 1 receptor 1004122005560122009301Rat
2316387Vom1r-ps81vomeronasal 1 receptor pseudogene 814122045600122046503Rat
2316386Vom1r-ps82vomeronasal 1 receptor pseudogene 824122055101122056097Rat
2316385Vom1r-ps83vomeronasal 1 receptor pseudogene 834122067831122068733Rat
2316384Vom1r-ps84vomeronasal 1 receptor pseudogene 844122072934122073845Rat
2316383Vom1r-ps85vomeronasal 1 receptor pseudogene 854122085455122086053Rat
2316408Vom1r103vomeronasal 1 receptor 1034122124451122131712Rat
708382Vom1r105vomeronasal 1 receptor 1054122124451122131893Rat
1587829Vom1r104vomeronasal 1 receptor 1044122169765122170730Rat
2316382Vom1r-ps86vomeronasal 1 receptor pseudogene 864122185642122186571Rat
1587811LOC685964hypothetical protein LOC6859644122217505122221999Rat
1562825Chst13carbohydrate sulfotransferase 134122223846122244848Rat
1587777Uroc1urocanate hydratase 14122244744122276357Rat
1561296ZxdcZXD family zinc finger C4122282119122314251Rat
1305768Cfap100cilia and flagella associated protein 1004122314462122338862Rat
70918Klf15Kruppel-like factor 154122364688122377690Rat
11435432LOC108350819uncharacterized LOC1083508194122505378122627742Rat
69339Nup210nucleoporin 2104122643952122741322Rat
9129755LOC103692186uncharacterized LOC1036921864122717433122718470Rat
1311706Hdac11histone deacetylase 114122781095122798355Rat
628685Fbln2fibulin 24122835237122895127Rat
69079Wnt7aWnt family member 7A4122994425123040609Rat
2316381Vom1r-ps87vomeronasal 1 receptor pseudogene 874123062299123062925Rat
1310746Chchd4coiled-coil-helix-coiled-coil-helix domain containing 44123108924123118186Rat
1549711Tmem43transmembrane protein 434123118468123133610Rat
1305760XpcXPC complex subunit, DNA damage recognition and repair factor4123134457123161985Rat
1305971Lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated4123162086123168330Rat
11469674LOC108350730uncharacterized LOC1083507304123272132123294291Rat
9140318LOC103690748uncharacterized LOC1036907484123285245123286792Rat
1596313Iqsec1IQ motif and Sec7 domain ArfGEF 14123400717123454656Rat
1589573Slc41a3solute carrier family 41, member 34123467552123513447Rat
621294Aldh1l1aldehyde dehydrogenase 1 family, member L14123516553123564067Rat
11453727LOC108350870glyceraldehyde-3-phosphate dehydrogenase pseudogene4123573149123574032Rat
621668Grip2glutamate receptor interacting protein 24123585184123636040Rat
61912Slc6a6solute carrier family 6 member 64123638619123713469Rat
7539827LOC102548902uncharacterized LOC1025489024123703946123738341Rat
1305225Ccdc174coiled-coil domain containing 1744123760708123787529Rat
11410861LOC10835080140S ribosomal protein S11-like4123764849123765341Rat
1560289RGD1560289similar to chromosome 3 open reading frame 204123790516123839149Rat
7553480LOC102554857uncharacterized LOC1025548574123858182123864108Rat
1305589Fgd5FYVE, RhoGEF and PH domain containing 54123865557123962904Rat
3201Nr2c2nuclear receptor subfamily 2, group C, member 24124005287124030349Rat
1308770Mrps25mitochondrial ribosomal protein S254124036654124048417Rat
1305397Rbsnrabenosyn, RAB effector4124050559124080919Rat
9301889LOC103692187uncharacterized LOC1036921874124080874124090409Rat
3903Trhthyrotropin releasing hormone4124110716124113242Rat
1306723Prickle2prickle planar cell polarity protein 24124238167124584176Rat
9377556LOC103692188uncharacterized LOC1036921884124537165124539501Rat
1306889Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 94124660254124860997Rat
7661237LOC102554570uncharacterized LOC1025545704124700015124752686Rat
7590189LOC102555978uncharacterized LOC1025559784125044157125133795Rat
7601859LOC102555860uncharacterized LOC1025558604125147311125164319Rat
7514013LOC102556061uncharacterized LOC1025560614125191567125247001Rat
9070006LOC103692189uncharacterized LOC1036921894125604132125608677Rat
9285430LOC103692190uncharacterized LOC1036921904125644800125657336Rat
1586441LOC688659similar to acidic ribosomal phosphoprotein P04125658901125660013Rat
1586025Magi1membrane associated guanylate kinase, WW and PDZ domain containing 14125684816126300013Rat
7537443LOC102556496uncharacterized LOC1025564964125688257125697591Rat
7545388LOC102556397gamma-aminobutyric acid receptor-associated protein-like4126015048126016219Rat
2319160LOC100361920dynein light chain 1-like4126070800126074935Rat
9075742LOC103692191uncharacterized LOC1036921914126220395126226449Rat
1585997LOC502863similar to transcription elongation factor B (SIII), polypeptide 24126305326126305689Rat
2320195LOC100364870hypothetical LOC1003648704126369560126410240Rat
2323903LOC100362876hypothetical LOC1003628764126515242126520847Rat
7707413LOC10254641260S ribosomal protein L23a-like4126520330126520871Rat
1308811Slc25a26solute carrier family 25 member 264126522335126615402Rat
1306788Lrig1leucine-rich repeats and immunoglobulin-like domains 14126615998126717434Rat
9101484LOC103692192uncharacterized LOC1036921924126632734126635384Rat
11484082LOC108350731uncharacterized LOC1083507314126806910126876502Rat
11504573LOC108350732uncharacterized LOC1083507324126884411126899044Rat
11357165LOC108350733uncharacterized LOC1083507334126901623126927870Rat
2318954LOC100362026cytochrome c oxidase, subunit VIc-like4126905378126905672Rat
11398915Trnal-aag2transfer RNA leucine (anticodon AAG) 24126941939126942020Rat
11432238LOC108350734uncharacterized LOC1083507344126953162126981104Rat
1585996LOC502864similar to proteasome beta 3 subunit4127025024127028562Rat
1563166Kbtbd8kelch repeat and BTB domain containing 84127164728127177537Rat
1586024LOC500263similar to heterogeneous nuclear ribonucleoprotein A34127193389127194243Rat
1583000LOC688907similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)4127328444127334012Rat
1305008Suclg2succinate-CoA ligase GDP-forming subunit beta4127552100127824970Rat
9414372LOC103692194uncharacterized LOC1036921944127561439127562904Rat
9215796LOC103692193uncharacterized LOC1036921934127796666127800972Rat
1564292RGD1564292similar to Nucleolar protein 14127966113127968435Rat
11412448LOC108350820ribosome biogenesis regulatory protein homolog4128095623128098790Rat
7508836LOC102549269uncharacterized LOC1025492694128152877128221659Rat
11081189LOC500265nucleoporin 50-like4128264112128267776Rat
7643253LOC102550115ribosome biogenesis regulatory protein homolog4128659271128662434Rat
1563030Tafa1TAFA chemokine like family member 14128818468128942088Rat
1597443Tafa4TAFA chemokine like family member 44129196658129430438Rat
9340208LOC103692195uncharacterized LOC1036921954129318247129319649Rat
1359357EogtEGF domain specific O-linked N-acetylglucosamine transferase4129477779129515435Rat
620551Tmf1TATA element modulatory factor 14129521986129546024Rat
621084Uba3ubiquitin-like modifier activating enzyme 34129548411129569550Rat
708572Arl6ip5ADP-ribosylation factor like GTPase 6 interacting protein 54129574363129598240Rat
1564924Lmod3leiomodin 34129604378129619136Rat
620172Frmd4bFERM domain containing 4B4129658137129984735Rat
11470597LOC108350736uncharacterized LOC1083507364129680778129690167Rat
11494882LOC108350735uncharacterized LOC1083507354129863376129880065Rat
9139503LOC10369219660S ribosomal protein L23a pseudogene4129896833129898054Rat
11400915LOC108350821glyceraldehyde-3-phosphate dehydrogenase pseudogene4130078501130082491Rat
11455689LOC108350871uncharacterized LOC1083508714130118654130152487Rat
3092Mitfmelanocyte inducing transcription factor4130172484130425496Rat
11400782LOC108350872uncharacterized LOC1083508724130537776130548325Rat
2323009Mdfic2MyoD family inhibitor domain containing 24130649564130751397Rat
1308669Foxp1forkhead box P14131362178131963466Rat
7669867LOC102555037uncharacterized LOC1025550374131990634131993482Rat
1586185Eif4e3eukaryotic translation initiation factor 4E family member 34132068581132111092Rat
71067Gpr27G protein-coupled receptor 274132137793132138926Rat
1561565Ier3ip1immediate early response 3 interacting protein 14132140802132152059Rat
620280Prok2prokineticin 24132157556132171244Rat
7507912LOC102555186uncharacterized LOC1025551864132290011132294070Rat
1560513RGD1560513similar to macrophage migration inhibitory factor4132295929132298552Rat
9229745LOC103692198uncharacterized LOC1036921984132330276132374231Rat
9307839LOC103692197uncharacterized LOC1036921974132430947132439747Rat
9261195LOC103692199uncharacterized LOC1036921994132530834132579765Rat
11380835LOC108350738uncharacterized LOC1083507384132608924132610834Rat
11518111LOC108350737uncharacterized LOC1083507374132615974132624020Rat
1307077RybpRING1 and YY1 binding protein4132689623132740823Rat
7643619LOC102555246uncharacterized LOC1025552464133008974133013814Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133037515133127183Rat
1310610Shq1SHQ1, H/ACA ribonucleoprotein assembly factor4133131711133133170Rat
1593481LOC689383similar to cytoplasmic beta-actin4133137034133139247Rat
1586482Gxylt2glucoside xylosyltransferase 24133179185133263493Rat
1307312Ppp4r2protein phosphatase 4, regulatory subunit 24133285552133323755Rat
9272263LOC103692200uncharacterized LOC1036922004133406466133413628Rat
7731047LOC102555697uncharacterized LOC1025556974133406466133469099Rat
11480110LOC108350739uncharacterized LOC1083507394133415250133420934Rat
1586603LOC686093similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34)4133523773133541592Rat
11385382LOC10835087360S ribosomal protein L17 pseudogene4133680324133680845Rat
9255243LOC103692201UPF0729 protein C18orf32 homolog4133680844133681086Rat
1592353LOC689407similar to smoothelin isoform a4133688739133690763Rat
1305250Pdzrn3PDZ domain containing RING finger 34133717139133951282Rat
11469179LOC108350740uncharacterized LOC1083507404134178846134183878Rat
1586021LOC500273similar to tubulin, alpha 8 like 34134290913134291859Rat
1592322LOC689440similar to 60S ribosomal protein L134134507143134512545Rat
3253Cntn3contactin 34134783671135159309Rat
11513147LOC108350822uncharacterized LOC1083508224135374528135384688Rat
7698712LOC102547280uncharacterized LOC1025472804135465906135470160Rat
7565639LOC102549329uncharacterized LOC1025493294135876685135891505Rat
1585995LOC502869similar to karyopherin (importin) alpha 24135948298135950166Rat
1586020LOC500277similar to Ras-GTPase-activating protein binding protein 1 (ATP-dependent DNA helicase VIII) (GAP SH3-domain binding protein 1) (G3BP-1) (HDH-VIII)4136078376136079997Rat
1560353RGD1560353similar to 60S ribosomal protein L134136124902136127166Rat
1563492RGD1563492similar to ATP-binding cassette, sub-family F (GCN20), member 24136226867136229249Rat
62008Cntn6contactin 64136512201136904355Rat
621361Cntn4contactin 44137785166138787527Rat
1586019LOC500279similar to Phosphoglycerate kinase 14138432885138434587Rat
70938Il5rainterleukin 5 receptor subunit alpha4138796165138834164Rat
1308857Trnt1tRNA nucleotidyl transferase 14138855497138869217Rat
1310533Crbncereblon4138864910138885786Rat
11479425LOC108348222GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase pseudogene4139024096139026202Rat
1585994LOC502870similar to B0361.84139024096139165637Rat
1589884LOC689694similar to 40S ribosomal protein S7 (S8)4139537980139538525Rat
1564145Lrrn1leucine rich repeat neuronal 14139633310139679730Rat
11408865LOC108350741uncharacterized LOC1083507414139683245139690535Rat
6487745LOC100912325actin, cytoplasmic 2-like4139990873139991923Rat
1565882SetmarSET domain and mariner transposase fusion gene4140092346140104495Rat
1309939Sumf1sulfatase modifying factor 14140139017140220482Rat
2933Itpr1inositol 1,4,5-trisphosphate receptor, type 14140247297140580749Rat
7723051LOC102547466uncharacterized LOC1025474664140564422140594171Rat
7692497LOC102547402uncharacterized LOC1025474024140620451140656139Rat
11461811LOC108350742uncharacterized LOC1083507424140656378140666835Rat
68439Bhlhe40basic helix-loop-helix family, member e404140703619140709319Rat
1562830Arl8bADP-ribosylation factor like GTPase 8B4140837745140881866Rat
1563633Edem1ER degradation enhancing alpha-mannosidase like protein 14140886644140918654Rat
11400916LOC108350874uncharacterized LOC1083508744141021819141023201Rat
1586018LOC500283similar to Proteasome 26S subunit subunit 4 ATPase CG5289-PA4141168128141169458Rat
11358358LOC108350743uncharacterized LOC1083507434141997425142006546Rat
619857Grm7glutamate metabotropic receptor 74142452616143368460Rat
9199378LOC103692202cyclin-dependent kinases regulatory subunit 2 pseudogene4142969739142970846Rat
11418581LOC108350844uncharacterized LOC1083508444143266215143272319Rat
9205690LOC103692203uncharacterized LOC1036922034144070869144117408Rat
1308963Lmcd1LIM and cysteine-rich domains 14144192989144252554Rat
1562010Ssuh2ssu-2 homolog4144301913144322197Rat
2281Cav3caveolin 34144382945144398919Rat
3239Oxtroxytocin receptor4144399326144417598Rat
1306993Rad18RAD18 E3 ubiquitin protein ligase4144537329144620606Rat
7609120LOC102548080uncharacterized LOC1025480804144620731144687704Rat
1563152Srgap3SLIT-ROBO Rho GTPase activating protein 34144638782144869961Rat
7623898LOC102548337uncharacterized LOC1025483374144953748144985765Rat
1560852Thumpd3THUMP domain containing 34144985850145010164Rat
6491660Thumpd3-as1THUMPD3 antisense RNA 14145010882145017388Rat
1310433Setd5SET domain containing 54145017549145095247Rat
11478132LOC108350744uncharacterized LOC1083507444145091322145113115Rat
727967Lhfpl4LHFPL tetraspan subfamily member 44145117533145147397Rat
1304842Mtmr14myotubularin related protein 144145195046145238097Rat
1309212Cpne9copine family member 94145238011145262444Rat
1584828Brpf1bromodomain and PHD finger containing, 14145264445145280943Rat
621168Ogg18-oxoguanine DNA glycosylase4145282828145289367Rat
629473Camk1calcium/calmodulin-dependent protein kinase I4145289300145300146Rat
2319531LOC100361743chaperonin containing Tcp1, subunit 3 (gamma)4145307845145310648Rat
2319475LOC100361799cDNA sequence BC006662-like4145312923145313543Rat
1564009Tada3transcriptional adaptor 34145318417145330291Rat
1310096Arpc4actin related protein 2/3 complex, subunit 44145330457145340985Rat
1311255Ttll3tubulin tyrosine ligase like 34145341059145366614Rat
1307582Rpusd3RNA pseudouridine synthase D34145361937145370992Rat
7499834LOC102548450uncharacterized LOC1025484504145373527145376624Rat
1562113Cideccell death-inducing DFFA-like effector c4145377482145390497Rat
2319333LOC100361844mCG51413-like4145395849145398300Rat
1565488Jagn1jagunal homolog 14145399885145404605Rat
735148Il17reinterleukin 17 receptor E4145413157145426608Rat
1306392Il17rcinterleukin 17 receptor C4145426647145439845Rat
1309412Creld1cysteine-rich with EGF-like domains 14145440284145449894Rat
1562419Prrt3proline-rich transmembrane protein 34145449574145458900Rat
1311566Emc3ER membrane protein complex subunit 34145471466145487375Rat
1303172Fancd2FA complementation group D24145489869145551479Rat
1565997Fancd2osFANCD2 opposite strand4145549248145556054Rat
1598136Brk1BRICK1 subunit of SCAR/WAVE actin nucleating complex4145559206145574438Rat
3960Vhlvon Hippel-Lindau tumor suppressor4145580869145587835Rat
1309584Irak2interleukin-1 receptor-associated kinase 24145594575145651066Rat
1586017Tatdn2TatD DNase domain containing 24145653299145669343Rat
632283Ghrlghrelin and obestatin prepropeptide4145674157145678066Rat
1359555Sec13SEC13 homolog, nuclear pore and COPII coat complex component4145686186145699577Rat
2176Atp2b2ATPase plasma membrane Ca2+ transporting 24145704779145948997Rat
9152984LOC103692204uncharacterized LOC1036922044145798664145803494Rat
11380647LOC108350745uncharacterized LOC1083507454146071280146086117Rat
628737Slc6a11solute carrier family 6 member 114146106386146223228Rat
11426638LOC108350746uncharacterized LOC1083507464146181234146202910Rat
620533Slc6a1solute carrier family 6 member 14146258842146292176Rat
7575330LOC102548867uncharacterized LOC1025488674146292860146302162Rat
9139504LOC103692205uncharacterized LOC1036922054146302250146304311Rat
2830Hrh1histamine receptor H 14146374596146458148Rat
7642709LOC102555883endothelial differentiation-related factor 1-like4146506812146510932Rat
6488791LOC100912154tubulin alpha-1C chain-like4146507086146508652Rat
11470762LOC108350747endogenous retrovirus group K member 10 Gag polyprotein-like4146558384146560078Rat
1304817Atg7autophagy related 74146570113146777093Rat
1311653Vgll4vestigial-like family member 44146778556146890063Rat
1586150Tamm41TAM41 mitochondrial translocator assembly and maintenance homolog4146922085146954159Rat
7601218LOC102556150mth938 domain-containing protein-like4146962237146962825Rat
11475264LOC108350875uncharacterized LOC1083508754146972672146982399Rat
3798Syn2synapsin II4147037179147195096Rat
2319464LOC100365210hypothetical LOC1003652104147103945147108065Rat
6491335LOC100911724tubulin alpha-1C chain-like4147104219147105627Rat
69077Timp4TIMP metallopeptidase inhibitor 44147156948147163467Rat
3371Ppargperoxisome proliferator-activated receptor gamma4147274055147399383Rat
11382098LOC108350748uncharacterized LOC1083507484147383624147390408Rat
1309946Tsen2tRNA splicing endonuclease subunit 24147455506147490869Rat
2320714Mkrn2osMKRN2 opposite strand4147497139147505339Rat
1310618Mkrn2makorin, ring finger protein, 24147514041147532086Rat
3531Raf1Raf-1 proto-oncogene, serine/threonine kinase4147532040147592769Rat
1587025Tmem40transmembrane protein 404147645333147657847Rat
620480Cand2cullin-associated and neddylation-dissociated 2 (putative)4147686487147714593Rat
621203Rpl32ribosomal protein L324147715480147719044Rat
1586985Efcab12EF-hand calcium binding domain 124147720813147743342Rat
1585874Mbd4methyl-CpG binding domain 4 DNA glycosylase4147744673147756462Rat
1311302Ift122intraflagellar transport 1224147756574147826983Rat
3573Rhorhodopsin4147832136147837298Rat
1566236H1f8H1.8 linker histone4147844658147849779Rat
1310796Plxnd1plexin D14147854309147894170Rat
1311909Tmcc1transmembrane and coiled-coil domain family 14147920987148048852Rat
1592944LOC680385similar to Sjogren syndrome antigen B4147929498147931250Rat
735230Washc2cWASH complex subunit 2C4148139512148197363Rat
7515225LOC102548151uncharacterized LOC1025481514148168185148170863Rat
11384346LOC10835075060S ribosomal protein L9-like4148178627148182006Rat
628707Zfand4zinc finger AN1-type containing 44148198810148270273Rat
1309339Marchf8membrane associated ring-CH-type finger 84148285467148398148Rat
1591759LOC680441similar to 60S ribosomal protein L23a4148361040148362371Rat
2096Alox5arachidonate 5-lipoxygenase4148398004148446308Rat
11501754LOC10835074960S ribosomal protein L7 pseudogene4148421489148426621Rat
1333902Olr823olfactory receptor 8234148469704148477869Rat
1333048Olr824olfactory receptor 8244148519816148520799Rat
1333814Olr825olfactory receptor 8254148544958148545941Rat
1332818Olr826olfactory receptor 8264148567386148568369Rat
1332631Olr827olfactory receptor 8274148589144148590127Rat
9311266LOC103692206uncharacterized LOC1036922064148610220148618888Rat
1586016LOC500299similar to heat shock protein 1, alpha4148617263148619575Rat
1333047Olr828olfactory receptor 8284148623770148624753Rat
1585993LOC502876similar to protein phosphatase 1, regulatory subunit 15B4148628116148631016Rat
1332875Olr829olfactory receptor 8294148647654148650506Rat
1334034Olr830olfactory receptor 8304148664043148665912Rat
1333628Olr831olfactory receptor 8314148690066148690998Rat
1333171Olr832olfactory receptor 8324148710898148711830Rat
11489696Trnac-gca29transfer RNA cysteine (anticodon GCA) 294148720025148720096Rat
620229Zfp422zinc finger protein 4224148757362148761594Rat
1307785Rassf4Ras association domain family member 44148769092148804295Rat
1565700Depp1DEPP1, autophagy regulator4148780330148784566Rat
1308850Tmem72transmembrane protein 724148819906148845199Rat
1560120Akr1b1-ps2aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 24148951611148952561Rat
11446777LOC108350751uncharacterized LOC1083507514148958591148960322Rat
11463298LOC108350876uncharacterized LOC1083508764149183163149191926Rat
3651Cxcl12C-X-C motif chemokine ligand 124149261044149273891Rat
7749382LOC102548743uncharacterized LOC1025487434149371163149395805Rat
1596703LOC681387similar to ubiquitin-conjugating enzyme E2M4149558413149562252Rat
2321730LOC100360627DAZ associated protein 2-like4149777904149778604Rat
1563294RGD1563294similar to Alpha enolase (2-phospho-D-glycerate hydro-lyase)4149800558149802051Rat
1559850Zfp637zinc finger protein 6374149857127149882828Rat
6502210Zfp239zinc finger protein 2394149902278149909841Rat
620366Hnrnpfheterogeneous nuclear ribonucleoprotein F4149957143149978896Rat
70998Fxyd4FXYD domain-containing ion transport regulator 44149984206149988744Rat
1583233LOC685069similar to H2A histone family, member V isoform 14150029954150030549Rat
9169449LOC103692207uncharacterized LOC1036922074150061415150068584Rat
1305836Rasgef1aRasGEF domain family, member 1A4150063484150144203Rat
1563660Csgalnact2chondroitin sulfate N-acetylgalactosaminyltransferase 24150148626150185062Rat
1597753LOC685129similar to developmental pluripotency-associated 34150199518150200671Rat
3556Retret proto-oncogene4150202170150249196Rat
1597729LOC685154similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6) (RPABC5)4150301680150302082Rat
1308043Bms1BMS1 ribosome biogenesis factor4150433567150471783Rat
9378282LOC103692208uncharacterized LOC1036922084150439712150442834Rat
11379695LOC10835075260S ribosomal protein L17 pseudogene4150449282150450389Rat
2293498Zfp9zinc finger protein 94150482989150533610Rat
1561270Zfp248zinc finger protein 2484150483571150507303Rat
1310736Ankrd26ankyrin repeat domain 264150548656150616928Rat
2245Cacna1ccalcium voltage-gated channel subunit alpha1 C4150635808151270790Rat
7701318LOC102553751uncharacterized LOC1025537514150637437150645687Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10156D4Mit181854131532260131532452Ratregion
10157D4Wox171574131532286131532442Ratregion
10158D4Arb162514131532269131532519Ratregion
10266D4Arb41604150682435150682594Ratregion
10267D4Mgh301334150682428150682552Ratregion
10513D4Arb63064117296483117296788Ratregion
10525D4Mit311244106590076106590199Ratregion
11229D4Wox281374109496867109497003Ratregion
33933D4Mit161144127777294127777403Ratregion
33991D4Mit282204108876717108876936Ratregion
33995D4Mit191454145373934145374062Ratregion
34001D4Mit171474132455408132455556Ratregion
34023D4Mit291364117051833117051946Ratregion
34106D4Mgh61654133202692133202830Ratregion
34174D4Mgh71434137666258137666428Ratregion
34174D4Mgh71434136351734136351904Ratregion
34256D4Mgh181244125884464125884552Ratregion
34308D4Mgh91194148360954148361074Ratregion
34367D4Mgh81064145254666145254791Ratregion
34435D4Mgh191504147735145147735286Ratregion
11381D4Mgh171374113247673113247809Ratregion
11381D4Mgh171374113100978113101114Ratregion
11383D4Mit231204113247687113247806Ratregion
11383D4Mit231204113100992113101111Ratregion
11409D4Wox181134118044882118044994Ratregion
11410D4Arb52474118044851118045097Ratregion
33696D4Mit151874111809356111809586Ratregion
36029D4Rat511704119538229119538396Ratregion
36043D4Rat491524117007421117007572Ratregion
36109D4Rat431474115054888115055023Ratregion
36143D4Rat601194145611768145611886Ratregion
36175D4Rat531924122483467122483659Ratregion
36271D4Rat811424138199017138199153Ratregion
36368D4Mit324115394252115394402Ratregion
37214D4Rat1052284125765814125766052Ratregion
37592D4Rat1411934146942075146942261Ratregion
35262D4Rat791584129614905129615056Ratregion
35276D4Rat831414148238860148239000Ratregion
35278D4Rat462994120400597120400898Ratregion
35310D4Rat451644119278131119278294Ratregion
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5082673BE1199791604122783971122784130Ratregion
5081020RH1419182094118451780118451988Ratregion
5084476AA8504811514127552196127552346Ratregion
5082753BF3900211234116637428116637550Ratregion
5081222RH1420352204122301196122301415Ratregion
5081308RH1420851904145063970145064159Ratregion
5081346UniSTS:2261511824116973871116974052Ratregion
5084910AI1723912374150482068150482304Ratregion
5085010AI2297721224147472301147472422Ratregion
5083083BI2751072004124033446124033645Ratregion
5083233BG3803312314126217770126218000Ratregion
5081689BF4080771004145673907145674006Ratregion
5086781AA9648031874147854340147854526Ratregion
5083755AI2299832044147282658147282861Ratregion
5083819AA8008782304144536864144537093Ratregion
5083958AI0120881464147719441147719745Ratregion
5083980AI2323511174118495673118495789Ratregion
5502859Cxcl1211194149266250149267368Ratregion
5503014Loxl313564113882331113883686Ratregion
5503107CCT71064117249719117250363Ratregion
5503146RAB7A784119915841119916586Ratregion
5503328UniSTS:238061884145326930145327120Ratregion
5503585UniSTS:4646631164116274693116274808Ratregion
5504510PMC262394P11274145674270145675339Ratregion
5504512PMC262394P304145677241145677993Ratregion
5504662PMC33279P14604133137870133138319Ratregion
5504268G436641284145703060145703187Ratregion
5504274D2S1554E2504118328190118328439Ratregion
5504288D3S2930E1934145706553145706745Ratregion
5504652PMC327172P12814120125898120126178Ratregion
5504811ha210216974140787377140789073Ratregion
5504869ha271704144099752144100310Ratregion
5505414Oxtr6624144415403144416064Ratregion
5505460Prok2664132157580132157645Ratregion
5505486G197171654132689601132689765Ratregion
5505229Aldh1l1684123542962123543029Ratregion
5505261Hnrnpf3254149977913149978237Ratregion
5505186Mbd42004147748820147749019Ratregion
5505622UniSTS:48678214994132894870132896368Ratregion
5505626UniSTS:48763811344132137793132138926Ratregion
5505544D12S20449644120783497120784460Ratregion
5505786UniSTS:49324111344132137793132138926Ratregion
5505822UniSTS:49555010484121703393121704440Ratregion
5505935UniSTS:49661912814130390412130391692Ratregion
5506242TXP2087544121009392121010145Ratregion
5506473AFM342xc104130851566130852133Ratregion
5506533GRM7_13887684143367675143368442Ratregion
5506437UniSTS:4793056004115677852115678451Ratregion
5506441UniSTS:4792816604147930023147930682Ratregion
5506445UniSTS:4803022074113247795113248001Ratregion
5506445UniSTS:4803022074113101100113101306Ratregion
5507047UniSTS:2242371814141253872141254052Ratregion
5507107UniSTS:2245851954119748534119748728Ratregion
5507057UniSTS:2242782054122675217122675421Ratregion
5499517stSG61060504109908599109908857Ratregion
5499593G66214784145054914145054991Ratregion
5500563RH1359991454145471825145471969Ratregion
5500581RH1360641464118228058118228203Ratregion
5499909UniSTS:2354952114123451852123452062Ratregion
5499911UniSTS:2354961374122855453122855589Ratregion
5500021UniSTS:2362041104119764829119764938Ratregion
5499649MARC_6321-6322:992007238:1914114895762114896173Ratregion
5501005PMC117179P16974145322240145322936Ratregion
5501640UNH10423114123002020123002330Ratregion
5500178D6Mit1417304145979550145980279Ratregion
5499839UniSTS:2349592354115487008115487242Ratregion
5499915UniSTS:2354822074117251483117252002Ratregion
5499917UniSTS:2355232094145587411145587619Ratregion
5503752UniSTS:4698195374147532162147532698Ratregion
5501035PMC124275P24704119911355119911824Ratregion
5501253PMC170950P13904144415399144415788Ratregion
5501414Ogg104145286983145288270Ratregion
5501594RH369058854123156128123157012Ratregion
5504171Raf12614147546640147547189Ratregion
5504490PMC23053P21104145581092145581201Ratregion
5504704PMC58532P12444120140086120140795Ratregion
5501534RH468973694129181679129182047Ratregion
5501562STS-Z4114013894113141406113142518Ratregion
5501622REN62H019764132645446132646421Ratregion
5501798MARC_12813-12814:999878148:11664115475833115476636Ratregion
5502134MARC_5405-5406:996690354:1634125659077125659139Ratregion
5502936Srgap311204144639153144640272Ratregion
5506895G474331484132224068132224215Ratregion
5502243AI3156818124117472498117473309Ratregion
5502409RH1247491514119748200119748350Ratregion
5502471RH124966844113888419113888502Ratregion
11565149D4Nirs22244119700040119700264Ratregion
11565154D4Nirs82084120086953120087161Ratregion
Position Markers

Flank 1: (D4Arb30)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4473,972,454 - 73,972,591UniSTS
RGSC_v3.4473,972,453 - 73,972,591RGD
RGSC_v3.1474,248,583 - 74,248,721RGD
Celera469,789,851 - 69,789,980UniSTS
RH 3.4 Map4465.4RGD
RH 3.4 Map4465.4UniSTS
RH 2.0 Map4512.0RGD
SHRSP x BN Map437.38RGD
FHH x ACI Map445.77RGD
Cytogenetic Map4q24UniSTS
Peak: (D4Arb24)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map4 RGD
Flank 2: (D4Arb4)
Rat AssemblyChrPosition (strand)Source
Rnor_6.04150,682,435 - 150,682,594NCBI
Rnor_5.04216,606,296 - 216,606,455UniSTS
RGSC_v3.44154,937,067 - 154,937,227RGD
RGSC_v3.44154,937,068 - 154,937,227UniSTS
RGSC_v3.14155,181,908 - 155,182,068RGD
Celera4140,674,416 - 140,674,575UniSTS
Cytogenetic Map4q42UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)460439127113416139Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)461708341113100992Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)461975371106975371Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)463938412108938412Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)471476518116476518Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)471476518116476518Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473786419132455556Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)475258970120258970Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)475258970120258970Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)476567036121567036Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)479555067124555067Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)479557856116916073Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481874073119546974Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)481959983152055009Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)484475257178931073Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)485794049129615056Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486312589146942261Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486312589147702403Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486438317168047091Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486532519131532519Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487136446132136446Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487136446132136446Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)494414208139414208Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494893247168046938Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)499066823144066823Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)499066972110635449Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105277348150277348Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4105682594150682594Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4105971071168047091Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106347236151347236Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4108876717169215811Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109636356154636356Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109636356154636356Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4112807675157807675Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4115372758150038284Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4116726724157291438Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4117926139162926139Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4119705414146087100Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4120318422146087100Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120400597146942261Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4123111827168111827Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123478354168478354Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4123587009168587009Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4124442168169442168Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4125884464168047091Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4128602727173602727Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4131834282176834282Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4131864442176864442Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132455408168047091Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (VE) (CMO:0000132)4134917642179917642Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4136351734180689124Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4136908430182878540Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4137171018182171018Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4145373934176509907Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4145547014184226339Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4145547014184226339Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146086918168047091Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4146497452184226339Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4146942075168998263Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4147274055157294090Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scwia1

RGD Curation Notes
Note Type Note Reference
qtl_gene 395 known and 121 novel genes were found in an analysis based on PubMed and OMIM data 2307198