Iddm2 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways

QTL: Iddm2 (Insulin dependent diabetes mellitus QTL 2) Rattus norvegicus

Symbol: Iddm2
Name: Insulin dependent diabetes mellitus QTL 2
RGD ID: 61364
Previously known as: Iddm1
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: blood glucose level   (CMO:0000046)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8480,216,705 - 104,243,248RGD_MAPPER_PIPELINE
mRatBN7.2478,885,890 - 102,684,881RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0479,562,451 - 98,542,106RGD_MAPPER_PIPELINERnor_6.0
Cross Type: F2
Strains Crossed: BBDP/Rhw BBDR/Rhw 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BBDP/Rhw  (IEA)
BBDR/Rhw  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic isolation of iddm 1 on chromosome 4 in the biobreeding (BB) rat. Bieg S, etal., Mamm Genome 1998 Apr;9(4):324-6
2. Genetic dissection of autoimmune type I diabetes in the BB rat Jacob HJ, etal., Nat Genet 1992 Sep;2(1):56-60
3. BB rat diabetes susceptibility and body weight regulation genes colocalize on chromosome 2. Klaff LS, etal., Mamm Genome 1999 Sep;10(9):883-7
4. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
Related QTLs

Related QTL Description Reference
Eau1 maps to same region RGD:61073
Iddm1 interacts with RGD:61075


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3197Npyneuropeptide Y48021211180219310Rat
7571074LOC102555694uncharacterized LOC10255569448036993680372327Rat
41298329LOC120102516basic proline-rich protein-like48050346980510582Rat
1311833Pals2protein associated with LIN7 2, MAGUK p55 family member48050429880584951Rat
727871Gsdmegasdermin E48059034480651943Rat
1564287Osbpl3oxysterol binding protein-like 348067738380854169Rat
41162112LOC120102268uncharacterized LOC12010226848085421480866544Rat
402081811LOC134486672uncharacterized LOC13448667248094924180951404Rat
41061164LOC120102676small nucleolar RNA SNORA1748095427680954406Rat
1565415Rpl27al5ribosomal protein L27A like 548096439180964996Rat
2451Cycscytochrome c, somatic48098266780984767Rat
7624339LOC102546410uncharacterized LOC10254641048098497280998292Rat
1563788Spmip4sperm microtubule inner protein 448099414681019062Rat
61815Npvfneuropeptide VF precursor48104312881047045Rat
11401676LOC108350707uncharacterized LOC10835070748112564381126724Rat
1593814Aurka-ps3aurora kinase A, pseudogene 348114219581143639Rat
2319193Rpl36a-ps13ribosomal protein L36A, pseudogene 1348119073181191094Rat
7508808LOC102546824uncharacterized LOC10254682448132610581385481Rat
41052635LOC120102269uncharacterized LOC12010226948144105681447354Rat
401988047LOC134486579uncharacterized LOC13448657948145915081512081Rat
41083837LOC120102163uncharacterized LOC12010216348151936481521991Rat
1592878Cux1-ps1cut-like homeobox 1, pseudogene 148160049881603346Rat
9685082Mir148amicroRNA 148a48166443181664527Rat
7657543LOC102549423uncharacterized LOC10254942348173639981767346Rat
41399556LOC120102270uncharacterized LOC12010227048180289181811495Rat
1307730Nfe2l3NFE2 like bZIP transcription factor 348183740481865258Rat
1310403Hnrnpa2b1heterogeneous nuclear ribonucleoprotein A2/B148186735481875886Rat
1549705Cbx3chromobox 348187615581889912Rat
402274999LOC134486767igE-binding protein-like48192503881930714Rat
1561341Tomm20l2translocase of outer mitochondrial membrane 20 like 248192780781934464Rat
1305782Snx10sorting nexin 1048194326282007667Rat
41025668LOC120102271MICOS complex subunit MIC13-like48195264581955703Rat
41106900LOC120102272uncharacterized LOC12010227248196145782011161Rat
41093189LOC120102273uncharacterized LOC12010227348215519682159389Rat
41305549LOC120102274uncharacterized LOC12010227448215898282162424Rat
401988215LOC134486768uncharacterized LOC13448676848218669282189737Rat
620159Skap2src kinase associated phosphoprotein 248228122182431664Rat
7570592LOC102550087uncharacterized LOC10255008748243164282474002Rat
11420575LOC10835086060S ribosomal protein L31 pseudogene48252250882522897Rat
41099928LOC120102275uncharacterized LOC12010227548252364282538746Rat
11414885Hoxa1homeobox A148258650582589209Rat
7716070Hotairm1Hoxa transcript antisense RNA, myeloid-specific 148258941582592913Rat
11468112Hoxa2homeobox A248259338982597589Rat
1561431Hoxa3homeobox A348259986082643831Rat
7620814Hoxa3l1homeobox A3 like 148260593082623670Rat
40941309LOC120102276uncharacterized LOC12010227648260944382611874Rat
2814Hoxa4homeo box A448262029482622302Rat
10398773Hoxaas3Hoxa cluster antisense RNA 348263187182644571Rat
620609Hoxa5homeo box A548263295882636851Rat
1590236Hoxa6homeobox A648263702482639463Rat
1587253Hoxa7homeobox A748264634282652449Rat
1310001Hoxa9homeobox A948265384782659958Rat
2314882Mir196bmicroRNA 196b48266110182661185Rat
9410935Hoxa10homeobox A1048266220482671490Rat
1564605Hoxa11homeobox A1148267313982676801Rat
1564419Hoxa11-asHOXA11 antisense RNA48267702882680802Rat
1562483Hoxa13homeo box A1348268956682691701Rat
11434685Evx1even-skipped homeobox 148274719282751569Rat
41113909Ndufb4-ps7NADH:ubiquinone oxidoreductase subunit B4, pseudogene 748280483382805403Rat
40974159LOC120102277uncharacterized LOC12010227748290882382911327Rat
41226461LOC120102278uncharacterized LOC12010227848294394782949446Rat
708399Hibadh3-hydroxyisobutyrate dehydrogenase48297975983077819Rat
41150076LOC120102279uncharacterized LOC12010227948300143583057750Rat
402050431LOC134486582uncharacterized LOC13448658248310896483111236Rat
402341968LOC134486581uncharacterized LOC13448658148314963383152463Rat
708579Tax1bp1Tax1 binding protein 148315254983208463Rat
1589007Jazf1JAZF zinc finger 148321005483513790Rat
7551122Srsf7-ps5serine and arginine rich splicing factor 7, pseudogene 548347062483472753Rat
11492396LOC108350711uncharacterized LOC10835071148348428483495865Rat
402379178LOC134486580uncharacterized LOC13448658048352242183553581Rat
40973112LOC120102280uncharacterized LOC12010228048358653883595516Rat
41294070Ckmt1-ps1creatine kinase, mitochondrial 1, pseudogene 148361518983650209Rat
41301986LOC120102651small nucleolar RNA SNORA4848362691583627055Rat
41028316LOC120102281uncharacterized LOC12010228148365603483677361Rat
1566107Creb5cAMP responsive element binding protein 548372358784124786Rat
402002416LOC134486769uncharacterized LOC13448676948414717284151929Rat
1310827TrilTLR4 interactor with leucine-rich repeats48425278184257626Rat
41074832LOC120102667small nucleolar RNA SNORA1748431047184310602Rat
1563609Cpvlcarboxypeptidase, vitellogenic-like48431185384422098Rat
620140Chn2chimerin 248447898984738068Rat
41059633LOC120102282uncharacterized LOC12010228248450849384513539Rat
7593775LOC102553678uncharacterized LOC10255367848470179884706903Rat
1311589Prr15proline rich 1548476235784765403Rat
41347976Eef1b2-ps1eukaryotic translation elongation factor 1 beta 2, pseudogene 148477922884779895Rat
708559Wipf3WAS/WASL interacting protein family, member 348488040384960250Rat
1560999Scrn1secernin 148496245085024577Rat
7685582LOC102553885uncharacterized LOC10255388548502351285045132Rat
1311705Fkbp14FKBP prolyl isomerase 1448503584085051917Rat
1563940Plekha8pleckstrin homology domain containing A848505376585104376Rat
7537419Tomm7-ps3translocase of outer mitochondrial membrane 7, pseudogene 348506909685073959Rat
402327560LOC134486771uncharacterized LOC13448677148509975585110334Rat
1549700Mturnmaturin, neural progenitor differentiation regulator homolog48513782585158790Rat
6500991LOC100909941uncharacterized LOC10090994148520084885205477Rat
402463896LOC134486770uncharacterized LOC13448677048525271985266760Rat
1306645Znrf2zinc and ring finger 248527462685358083Rat
1562269Nod1nucleotide-binding oligomerization domain containing 148539114285442281Rat
41396160LOC120102675small nucleolar RNA SNORA1748544447285444598Rat
1304876Ggctgamma-glutamyl cyclotransferase48545338785459597Rat
402070931LOC134486772uncharacterized LOC13448677248545963385470492Rat
2325113LOC10035961360S ribosomal protein L12-like48547843485482737Rat
1307856Gars1glycyl-tRNA synthetase 148548493985542876Rat
70547Crhr2corticotropin releasing hormone receptor 248555316385596203Rat
402020459LOC134486773uncharacterized LOC13448677348561197885618301Rat
7724284LOC102550746uncharacterized LOC10255074648561990085640848Rat
1597087Inmtindolethylamine N-methyltransferase48564845985652755Rat
1562590Mindy4MINDY lysine 48 deubiquitinase 448568904985797553Rat
2141Aqp1aquaporin 148581278485824964Rat
2688Ghrhrgrowth hormone releasing hormone receptor48583034585863127Rat
7509699LOC102551107uncharacterized LOC10255110748587339885886009Rat
2038Adcyap1r1ADCYAP receptor type I48592417185972973Rat
1562793Neurod6neuronal differentiation 648617690986180155Rat
1561131Itprid1ITPR interacting domain containing 148634546786505820Rat
628647Ppp1r17protein phosphatase 1, regulatory subunit 1748654402486560839Rat
402059593LOC134486774uncharacterized LOC13448677448660037986607072Rat
68332Pde1cphosphodiesterase 1C48662907487108147Rat
40966591Apoo-ps4apolipoprotein O, pseudogene 448664822486648794Rat
41079727Trnas-aga44transfer RNA serine (anticodon AGA) 4448681252186812595Rat
41168976Trnat-agu9transfer RNA threonine (anticodon AGU) 948685662386856697Rat
41243681LOC120102661small nucleolar RNA SNORA1748712194487122077Rat
41177763LOC120102688small nucleolar RNA SNORA1748714355087143675Rat
1565107Rpsa-ps19ribosomal protein SA, pseudogene 1948719771987198657Rat
402323353LOC134486583large ribosomal subunit protein eL8-like48721830087219123Rat
1308655Lsm5LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated48728126087284476Rat
1564615Avl9AVL9 cell migration associated48729106287338537Rat
1310317Kbtbd2kelch repeat and BTB domain containing 248735813387380399Rat
1549757Fkbp9FKBP prolyl isomerase 948743643987486909Rat
1312013Nt5c3a5'-nucleotidase, cytosolic IIIA48749182887534838Rat
1585226Hnrnpa1-ps32heterogeneous nuclear ribonucleoprotein A1, pseudogene 3248754604387548764Rat
1585214Vom1r65vomeronasal 1 receptor 6548756609287575885Rat
11356528LOC108350861glyceraldehyde-3-phosphate dehydrogenase pseudogene48758229787583312Rat
1549708Vom1r67vomeronasal 1 receptor 6748759789987598843Rat
1549744Vom1r66vomeronasal 1 receptor 6648761859387619504Rat
2316407Vom1r-ps69vomeronasal 1 receptor pseudogene 6948765975587660751Rat
1584130Vom1r-ps70vomeronasal 1 receptor pseudogene 7048767319187674101Rat
1549721Vom1r68vomeronasal 1 receptor 6848771074087711651Rat
1549722Vom1r69vomeronasal 1 receptor 6948772474487725652Rat
2323070Selenot-ps1selenoprotein T, pseudogene 148772881187729358Rat
1549710Vom1r70vomeronasal 1 receptor 7048777799587778894Rat
1549777Vom1r71vomeronasal 1 receptor 7148786702287867924Rat
1549709Vom1r72vomeronasal 1 receptor 7248795689587957794Rat
41345109Hsp90aa1-ps7heat shock protein 90 alpha family class A member 1, pseudogene 748796107087962152Rat
1549715Vom1r73vomeronasal 1 receptor 7348801494088015857Rat
1582950Vom1r-ps71vomeronasal 1 receptor pseudogene 7148804366688044563Rat
6487873Tubg1-ps2tubulin, gamma 1, pseudogene 248804628788047612Rat
1549695Vom1r74vomeronasal 1 receptor 7448807395288074863Rat
11405111Vom1r75vomeronasal 1 receptor 7548808679388087725Rat
1549714Vom1r76vomeronasal 1 receptor 7648811198288112881Rat
1597453Hsp90aa1-ps1heat shock protein 90 alpha family class A member 1, pseudogene 148812123188126630Rat
1359218Vom1r77vomeronasal 1 receptor 7748813156388132480Rat
9351699LOC10369489440S ribosomal protein S6 pseudogene48815005288150849Rat
9290612LOC10369214440S ribosomal protein S6 pseudogene48817377288175283Rat
1549704Vom1r78vomeronasal 1 receptor 7848820221288203129Rat
1359257Vom1r79vomeronasal 1 receptor 7948824093188241842Rat
1549747Vom1r80vomeronasal 1 receptor 8048828509788285996Rat
1587250Tubg1-ps4tubulin, gamma 1, pseudogene 448828754588288983Rat
1549765Vom1r81vomeronasal 1 receptor 8148830733188308263Rat
1596167Vom1r-ps72vomeronasal 1 receptor pseudogene 7248834169188342598Rat
1549746Vom1r82vomeronasal 1 receptor 8248837890588379801Rat
1560845Vom1r-ps73vomeronasal 1 receptor pseudogene 7348839595988396493Rat
1549731Vom1r83vomeronasal 1 receptor 8348844409888445006Rat
1549753Vom1r84vomeronasal 1 receptor 8448846623688467144Rat
1549732Vom1r85vomeronasal 1 receptor 8548849112188492029Rat
1549696Vom1r86vomeronasal 1 receptor 8648852868588529593Rat
1587190Vom1r-ps74vomeronasal 1 receptor pseudogene 7448856166488562558Rat
1549756Vom1r87vomeronasal 1 receptor 8748858568588586593Rat
1596849Vom1r-ps111vomeronasal 1 receptor pseudogene 11148863716088638068Rat
1549699Vom1r88vomeronasal 1 receptor 8848867709488677987Rat
1306494Vopp1VOPP1 WW domain binding protein48869278488762903Rat
1310809Lancl2LanC like glutathione S-transferase 248877197488813920Rat
1565524PyurfPIGY upstream open reading frame48883200888835643Rat
1561739Herc6HECT and RLD domain containing E3 ubiquitin protein ligase family member 648885461288897043Rat
1563162Rps7-ps20ribosomal protein S7, pseudogene 2048892291888932181Rat
1308501Ppm1kprotein phosphatase, Mg2+/Mn2+ dependent, 1K48894222688969139Rat
402265510LOC134486584uncharacterized LOC13448658448897126889006347Rat
631345Abcg2ATP binding cassette subfamily G member 248900605689132915Rat
41258840U6l8U6 spliceosomal RNA like 848917620589176311Rat
402242749LOC134486585uncharacterized LOC13448658548918399589191292Rat
1587249Ppid-ps16peptidylprolyl isomerase D, pseudogene 1648918542789186999Rat
41250383LOC120102287uncharacterized LOC12010228748927208689282281Rat
1307803Herc3HECT and RLD domain containing E3 ubiquitin protein ligase 348928237489372656Rat
1584123Nap1l5nucleosome assembly protein 1-like 548935283489354704Rat
1309807Fam13afamily with sequence similarity 13, member A48938668589485940Rat
41392412LOC120102697small nucleolar RNA SNORA1748957079789570927Rat
1593482Acbd5-ps1acyl-CoA binding domain containing 5, pseudogene 148959779189744999Rat
1559612Tigd2tigger transposable element derived 248974451689747608Rat
402099541LOC134486586sentrin-specific protease 6-like48988192789884378Rat
2322105Senp6-ps1SUMO specific peptidase 6, pseudogene 148988192789885851Rat
1565690Gprin3GPRIN family member 348990219889987496Rat
402022896LOC134486587uncharacterized LOC13448658749009269490093568Rat
11451272LOC108350862uncharacterized LOC10835086249009283990110186Rat
41381715LOC120102288uncharacterized LOC12010228849077253790805718Rat
402095552LOC134486673uncharacterized LOC13448667349086926990872064Rat
402114732LOC134486775uncharacterized LOC13448677549089637690903154Rat
3729Sncasynuclein alpha49102647491127444Rat
1591097Eno1-ps7enolase 1, pseudogene 749120260591203901Rat
1587248Mmrn1multimerin 149120546291280862Rat
2321912Ppp6c-ps1protein phosphatase 6, catalytic subunit, pseudogene 149130052491327307Rat
41044388LOC120102751U2 spliceosomal RNA49148117791481368Rat
1565731Ccser1coiled-coil serine-rich protein 149148389692720439Rat
41195085LOC120102492uncharacterized LOC12010249249214591592261484Rat
11440908LOC108350839high mobility group protein B1-like49263667992646909Rat
402179802LOC134486691developmental pluripotency-associated protein 2-like49265051292651714Rat
40994091Paics-ps3phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 349297709192978067Rat
41059287LOC120102620U7 small nuclear RNA49304694293047006Rat
402062011LOC134486588uncharacterized LOC13448658849323688693301024Rat
620960Hint1-ps1histidine triad nucleotide binding protein 1, pseudogene 149343094793431521Rat
9264819Tshr-ps1thyroid stimulating hormone receptor, pseudogene 149347260993473091Rat
68368Grid2glutamate ionotropic receptor delta type subunit 249374516595222354Rat
41193354LOC120102493uncharacterized LOC12010249349462172994629494Rat
40926323LOC120102600U6 spliceosomal RNA49495411694954222Rat
41104383LOC120102494uncharacterized LOC12010249449522234595241758Rat
1565171Atoh1atonal bHLH transcription factor 149524193395244028Rat
41221465LOC120102615U7 small nuclear RNA49539083495390896Rat
40929032LOC120102616U7 small nuclear RNA49539098295391043Rat
1588783Ptma-ps1prothymosin alpha, pseudogene 149539525995395591Rat
41255876LOC120102647small nucleolar RNA SNORA4849547474495474887Rat
1587189Nono-ps10non-POU domain containing, octamer-binding, pseudogene 1049548725195488605Rat
1309640Smarcad1SNF2 related chromatin remodeling ATPase with DExD box 149563972295709055Rat
69251Hpgdshematopoietic prostaglandin D synthase49569826595727733Rat
402305742LOC134486776oxidized purine nucleoside triphosphate hydrolase-like49571150795718227Rat
9386529Ywhaq-ps4tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 449582088895821633Rat
1560028Qrfprlpyroglutamylated RFamide peptide receptor like49600813496086800Rat
402252747LOC134486777uncharacterized LOC13448677749611788496126042Rat
1588732Tnip3TNFAIP3 interacting protein 349619701996237357Rat
1311080Ndnfneuron-derived neurotrophic factor49627414796311624Rat
40991721LOC120102726small nucleolar RNA SNORA1749632287196322972Rat
41386173Trnal-aag20transfer RNA leucine (anticodon AAG) 2049636423996364320Rat
1588700Prdm5PR/SET domain 549640549296567647Rat
735071Rhoal1ras homolog family member A like 149658141196582783Rat
41323200LOC120102581U6 spliceosomal RNA49661457696614682Rat
1307592Lin28clin-28 homolog C (C. elegans)49674731696750247Rat
1587188Eif4g1-ps3eukaryotic translation initiation factor 4 gamma 1, pseudogene 349692000896922336Rat
1587548Havcr1-ps1hepatitis A virus cellular receptor 1, pseudogene 149696270696963021Rat
1564699Hmgb1-ps19high-mobility group box 1, pseudogene 1949707252797167014Rat
41328136LOC120102650small nucleolar RNA SNORA4849715626497156403Rat
1310889Mad2l1mitotic arrest deficient 2 like 149723641997247603Rat
1359215Vom1r89vomeronasal 1 receptor 8949727164997273299Rat
621516Gng12G protein subunit gamma 1249734083097464422Rat
2654Gadd45agrowth arrest and DNA-damage-inducible, alpha49748449797486799Rat
6488311LOC100912188uncharacterized LOC10091218849748619197534165Rat
619907Serbp1Serpine1 mRNA binding protein 149773120097748438Rat
41196388LOC120102291uncharacterized LOC12010229149774596297747821Rat
620026Il12rb2interleukin 12 receptor subunit beta 249775608997844937Rat
1586368Il23rinterleukin 23 receptor49791023098003759Rat
1359498Tacstd2tumor-associated calcium signal transducer 249803762098039320Rat
41113583LOC120102728small nucleolar RNA SNORA1749814005798140177Rat
41316092LOC120102682small nucleolar RNA SNORA1749818158298181714Rat
41337280LOC120102727small nucleolar RNA SNORA1749821561098215730Rat
11362919Igkvl-ps13immunoglobulin kappa variable like, pseudogene 1349829823298299135Rat
41059548LOC120102691small nucleolar RNA SNORA1749831959998319729Rat
41107960LOC120102702small nucleolar RNA SNORA1749832997498330105Rat
41251011LOC120102700small nucleolar RNA SNORA1749842654698426678Rat
9438141Igkvl8immunoglobulin kappa variable like 849844539398448746Rat
41170451LOC120102696small nucleolar RNA SNORA1749846048298460619Rat
41215295LOC120102732small nucleolar RNA SNORA1749848451998484639Rat
41112623LOC120102736small nucleolar RNA SNORA1749850466598504758Rat
40942068LOC120102704small nucleolar RNA SNORA1749855929098559422Rat
9102747Igkvl-ps16immunoglobulin kappa variable like, pseudogene 1649867862798679395Rat
40977765LOC120102731small nucleolar RNA SNORA1749881011998810220Rat
11364654Igkvl-ps17immunoglobulin kappa variable like, pseudogene 1749882453198825017Rat
9439280Igkvl9immunoglobulin kappa variable like 949890250798903005Rat
40936449LOC120102716small nucleolar RNA SNORA1749890625798906388Rat
402108501LOC134486778homeobox protein 14-like49911369899122791Rat
2322825Igkv2-112l1immunoglobulin kappa variable 2-112 like 149913898499139968Rat
9330732Ndufb3l1NADH:ubiquinone oxidoreductase subunit B3 like 149915794999158718Rat
11052016Igkvl10immunoglobulin kappa variable like 1049924606399247077Rat
41045910LOC120102715small nucleolar RNA SNORA1749929942399299549Rat
6495277Igkvl12immunoglobulin kappa variable like 1249933078199331673Rat
41327009LOC120102729small nucleolar RNA SNORA1749933375899333884Rat
1561722Igkvl2immunoglobulin kappa variable like 249946030499461192Rat
41094682LOC120102721small nucleolar RNA SNORA1749946327699463403Rat
41353377LOC120102733small nucleolar RNA SNORA1749956833199568433Rat
41169229LOC120102722small nucleolar RNA SNORA1749959268999592816Rat
402069906LOC134486781uncharacterized LOC13448678149973400099742093Rat
41125163LOC120102717small nucleolar RNA SNORA1749982341499823540Rat
41253364LOC120102725small nucleolar RNA SNORA1749991347799913609Rat
11051993Igkvl-ps11immunoglobulin kappa variable like, pseudogene 1149991813199919062Rat
402320942LOC134486779immunoglobulin kappa variable 1-39-like4100014700100015225Rat
41365694Igkvl-ps7immunoglobulin kappa variable like, pseudogene 74100095095100095843Rat
402183266LOC134486780uncharacterized LOC1344867804100132009100134387Rat
41263518Igkvl-ps5immunoglobulin kappa variable like, pseudogene 54100284996100285627Rat
41075263Igkvl-ps6immunoglobulin kappa variable like, pseudogene 64100470578100471209Rat
41277236LOC120102585U6 spliceosomal RNA4100601828100601932Rat
402349859LOC134486782uncharacterized LOC1344867824100603983100614051Rat
41180823LOC120102592U6 spliceosomal RNA4100625833100625937Rat
41205249Rnu6-936pRNA, U6 small nuclear 936, pseudogene4100656443100656547Rat
41120707LOC120102598U6 spliceosomal RNA4100675372100675475Rat
40974521LOC120102579U6 spliceosomal RNA4100709716100709820Rat
41114178LOC120102583U6 spliceosomal RNA4100724768100724872Rat
41107864LOC120102589U6 spliceosomal RNA4100746119100746223Rat
41033320LOC120102595U6 spliceosomal RNA4100765487100765591Rat
41049106Igkvl-ps15immunoglobulin kappa variable like, pseudogene 154100778854100779353Rat
40946187Igkvl-ps3immunoglobulin kappa variable like, pseudogene 34100796510100797012Rat
40961802LOC120102590U6 spliceosomal RNA4100802274100802378Rat
41270403Igkvl-ps4immunoglobulin kappa variable like, pseudogene 44100819395100819856Rat
2320855Mak16-ps1MAK16 homolog, pseudogene 14100820516100825636Rat
2323358Igkvl3immunoglobulin kappa variable like 34100845789100846334Rat
40952956Arpc5l-ps4actin related protein 2/3 complex, subunit 5-like, pseudogene 44100879264100880401Rat
41362761Igkvl-ps8immunoglobulin kappa variable like, pseudogene 84100987762100988271Rat
11051991Igkvl-ps10immunoglobulin kappa variable like, pseudogene 104101220179101221286Rat
2321092Igkvl1immunoglobulin kappa variable like 14101398022101398678Rat
2320327Igkvl-ps21immunoglobulin kappa variable like, pseudogene 214101665010101665645Rat
7521956Znf431l-ps5zinc finger protein 431 like, pseudogene 54101666125101675786Rat
2319569Igkvl14immunoglobulin kappa variable like 144101943829101944555Rat
1561547Igkvl16immunoglobulin kappa variable like 164101967681101968350Rat
402198614LOC134486784Ig kappa chain V-V region L7-like4102186387102193360Rat
11383082Igkvl-ps19immunoglobulin kappa variable like, pseudogene 194102286037102286593Rat
41136119LOC120102301uncharacterized LOC1201023014102294453102337997Rat
11458713Igkvl-ps2immunoglobulin kappa variable like, pseudogene 24102325094102325592Rat
11051990Igkvl-ps1immunoglobulin kappa variable like, pseudogene 14102450761102451362Rat
402391924LOC134486785uncharacterized LOC1344867854102502430102507658Rat
11051998Igkvl-ps18immunoglobulin kappa variable like, pseudogene 184102553426102554428Rat
2324539Igkcl1immunoglobulin kappa constant like 14102615848102616432Rat
1587247Fbl-ps5fibrillarin, pseudogene 54102688835102689607Rat
11051987Igkvl-ps20immunoglobulin kappa variable like, pseudogene 204102745735102746692Rat
1588449C17h6orf62-ps1similar to human chromosome 6 open reading frame 62, pseudogene 14102808588102809193Rat
41305950LOC120102564U6 spliceosomal RNA4102836240102836346Rat
402053242LOC134486789immunoglobulin kappa variable 1-39-like4102847351102848089Rat
620468Igkv28immunoglobulin kappa chain variable 284102852907102853451Rat
1592227Eif5-ps10eukaryotic translation initiation factor 5, pseudogene 104102913588102915087Rat
41091703Fbl-ps4fibrillarin, pseudogene 44102966552102967559Rat
2318882Igkvl13immunoglobulin kappa variable like 134102982819102983403Rat
41381944LOC120102305uncharacterized LOC1201023054102987204102995844Rat
2319042Igkv5-45l1immunoglobulin kappa chain variable 5-45 like 14103028717103029378Rat
1586004Fbl-ps6fibrillarin, pseudogene 64103060662103061952Rat
11497379Igkvl4immunoglobulin kappa variable like 44103195320103195700Rat
9252629Igkvl-ps12immunoglobulin kappa variable like, pseudogene 124103276301103281301Rat
1586003Igkvl5immunoglobulin kappa variable like 54103355853103356655Rat
11052049Igkv8-30l1immunoglobulin kappa chain variable 8-30 like 14103388274103389121Rat
1563231Igkv2-112l2immunoglobulin kappa variable 2-112 like 24103444658103445307Rat
402067271LOC134486676ARL14 effector protein-like4103463801103464061Rat
402401202LOC134486798immunoglobulin kappa chain variable 6-17-like4103538575103539525Rat
402424645LOC134486677ARL14 effector protein-like4103558636103558896Rat
402354537LOC134486887ARL14 effector protein-like4103853859103854338Rat
1564696Igkvl6immunoglobulin kappa variable like 64103863018103863782Rat
2321310Igkvl11immunoglobulin kappa variable like 114103902453103903100Rat
1597311Gtdc1-ps1glycosyltransferase-like domain containing 1, pseudogene 14104002532104003843Rat
2320908Igkvl7immunoglobulin kappa variable like 74104005619104006288Rat
41008980LOC120102656small nucleolar RNA SNORA484104130385104130528Rat
7706369Hdac2-ps1histone deacetylase 2, pseudogene 14104182485104183834Rat
41213638LOC120102652small nucleolar RNA SNORA484104233617104233760Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10782D4Mit81044104243144104243248Ratregion
11012D4Wox2214848021680480216952Ratregion
11013D4Arb729048021668280216972Ratregion
11014D4Mit729948021670580217004Ratregion
33905D4Mit1127449269051992690793Ratregion
35286D4Rat3714249463821494638356Ratregion
35409D4Rat3419148670964986709840Ratregion
36870D4Rat3315548233676582336920Ratregion
36978D4Rat3814149718292097183061Ratregion
37646D4Rat10813848417451084174648Ratregion
37650D4Rat11022749232054992320776Ratregion
37906D4Rat12720348067100880671211Ratregion
36462D4Rat3622949560677995607008Ratregion
35721D4Rat7619848658398086584178Ratregion
40586D4Rat23122248998680889987030Ratregion
40640D4Rat17125048954711589547365Ratregion
38656D4Rat12814448131760081317744Ratregion
40020D4Rat17316249381944993819611Ratregion
39520D4Rat17024348556664585566888Ratregion
42306D4Rat26614948605892886059077Ratregion
42307D4Rat28419448983204789832241Ratregion
41200D4Rat16918848294489582945083Ratregion
42705D4Rat26522248433783384338055Ratregion
42707D4Rat23024248886229688862538Ratregion
40932D4Rat16620248092630080926502Ratregion
43816D4Got6420348298619782986400Ratregion
43818D4Got6214648113254381132689Ratregion
43819D4Got6617648413348284133658Ratregion
60450D4Got6823049145907291459302Ratregion
60453D4Got7110549145906791459172Ratregion
60454D4Got7227149211307192113342Ratregion
60459D4Got7810549787030997870414Ratregion
62509D4Uia732248961217489612496Ratregion
66669D4Mco222748111945881119685Ratregion
1631514D4Got21118648177604381776229Ratregion
1641131D4Got21219648283470782834903Ratregion
1641721D4Got31213049751338197513511Ratregion
1639783D4Got30921749995831299958529Ratregion
1635287D4Got2472884102645890102646178Ratregion
1638049D4Got2161134103031562103031675Ratregion
5031376PMC153617P199149102703991028030Ratregion
5028171D14Mit2929948021670580217004Ratregion
5051200RH13449718648320803983208225Ratregion
5057302AI55658118049570482895705008Ratregion
5055187RH14365611148912614989126260Ratregion
5048714RH13306356749564206495642631Ratregion
5042960RH12974721048227960082279810Ratregion
5074280RH13792518748877202088772207Ratregion
5077336RH13969874548520481385205558Ratregion
5066844AU04811725449542136595421619Ratregion
5070277RH945749948021917680219275Ratregion
5062496BF39799612948075950980759638Ratregion
5062822AW52837318548187724981877434Ratregion
5087897Grid212949518553095185659Ratregion
5082595BE11981315249150653691506688Ratregion
5084510AI40975519848937206689372264Ratregion
5082921BF39041715448318835883188512Ratregion
5086843AA81923221248735832687358538Ratregion
5503105CRHR253948555551385556052Ratregion
5499601MARC_1211-1212:991931105:137648186934681869722Ratregion
5500747UniSTS:5764934448263281282633156Ratregion
5507355REN10051225748263281482633071Ratregion
5507371REN10064223248266195182662183Ratregion
5507379REN10077122648269095082691176Ratregion
Position Markers

Flank 1: (D4Mit7)
Rat AssemblyChrPosition (strand)Source
GRCr8480,216,705 - 80,217,004 (+)Marker Load Pipeline
mRatBN7.2478,885,890 - 78,886,189 (+)MAPPER
Rnor_6.0479,562,451 - 79,562,753RGD
Peak: (D4Mit7)
Rat AssemblyChrPosition (strand)Source
GRCr8480,216,705 - 80,217,004 (+)Marker Load Pipeline
mRatBN7.2478,885,890 - 78,886,189 (+)MAPPER
Rnor_6.0479,562,451 - 79,562,753RGD
Flank 2: (D4Mit8)
Rat AssemblyChrPosition (strand)Source
GRCr84104,243,144 - 104,243,248 (+)Marker Load Pipeline
mRatBN7.24102,684,777 - 102,684,881 (+)MAPPER
Rnor_6.0498,542,003 - 98,542,106RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2317587Eae26Experimental allergic encephalomyelitis QTL 26nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)489986808101226978Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)48021363484338055Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)480216705104243248Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48279077797183061Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Iddm2


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2001-01-19 Iddm2  Insulin-dependent diabetes mellitus QTL 2      QTL symbol assigned 61482 APPROVED
2001-01-19 Iddm1  Insulin-dependent diabetes mellitus QTL 1      QTL symbol reassigned 61482 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
qtl_gene Lymphopenia gene is linked to autoimmune diabetes in the BB rats. 631162
qtl_general the odds of linkage to the QTL is 200:1; lymphopenia is essential for the development of diabetes 61075
qtl_general a congenic strain BBDR.BBDP-(D4Mit6-D4Mit24) was developed to study the pathogenesis of diabetes which was controlled by this locus 61032