GWAS1676408_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1676408_H (paralytic strabismus QTL GWAS1676408 (human)) Homo sapiens

Symbol: GWAS1676408_H
Name: paralytic strabismus QTL GWAS1676408 (human)
RGD ID: 597619548
Trait: paralytic strabismus
LOD Score: Not Available
P Value: 6.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,174,147 - 17,174,148RGD_MAPPER_PIPELINEGRCh38
GRCh37117,500,642 - 17,500,643RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs138806634)
Human AssemblyChrPosition (strand)Source
GRCh38117,174,147 - 17,174,148RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597619548GWAS1676408_Hparalytic strabismus QTL GWAS1676408 (human)6e-12paralytic strabismus11717414717174148Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1676408_H GCST90480097 Paralytic strabismus (PheCode 378.5) 506 African American or Afro-Caribbean cases, 121,121 African American or Afro-Caribbean controls, 2,392 European ancestry cases, 447,453 European ancestry controls, 443 Hispanic or Latin American cases, 59,298 Hispanic or Latin American controls C 0.9998 6E-12 11.222 rs138806634 3.903 paralytic strabismus (EFO:0009678)
 PMID:39024449
Database Acc Id Source(s)
GWAS Catalog GCST90480097 GWAS Catalog

RGD Curation Notes
Note Type Note Reference