GWAS1562017_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1562017_H (tobacco smoke exposure measurement QTL GWAS1562017 (human)) Homo sapiens

Symbol: GWAS1562017_H
Name: tobacco smoke exposure measurement QTL GWAS1562017 (human)
RGD ID: 597465943
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381143,581,750 - 43,581,751RGD_MAPPER_PIPELINEGRCh38
GRCh371143,603,300 - 43,603,301RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1562017_HHumantobacco smoke exposure measurement  IAGPrs11820132405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1346748HSD17B12hydroxysteroid 17-beta dehydrogenase 12114355672143856615Human

Position Markers

Peak: (rs11820132)
Human AssemblyChrPosition (strand)Source
GRCh381143,581,750 - 43,581,751RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597465943GWAS1562017_Htobacco smoke exposure measurement QTL GWAS1562017 (human)2e-09tobacco smoke exposure measurement114358175043581751Human
597512096GWAS1608170_Heducational attainment QTL GWAS1608170 (human)3e-08educational attainment114358175043581751Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1562017_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals C 0.44 2E-9 8.699 rs11820132 0.0224 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
GWAS1608170_H GCST90105038 Educational attainment 3,037,499 European ancestry individuals T 0.568 3E-8 7.523 rs11820132 0.00587587 educational attainment (EFO:0011015)
PMID:35361970
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference