GWAS1562016_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1562016_H (tobacco smoke exposure measurement QTL GWAS1562016 (human)) Homo sapiens

Symbol: GWAS1562016_H
Name: tobacco smoke exposure measurement QTL GWAS1562016 (human)
RGD ID: 597465942
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 2.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh389133,613,233 - 133,613,234RGD_MAPPER_PIPELINEGRCh38
GRCh379136,478,355 - 136,478,356RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1562016_HHumantobacco smoke exposure measurement  IAGPrs3025343405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3025343)
Human AssemblyChrPosition (strand)Source
GRCh389133,613,233 - 133,613,234RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597497406GWAS1593480_Hsmoking initiation QTL GWAS1593480 (human)3e-18smoking initiation9133613233133613234Human
597499625GWAS1595699_Hbody mass index QTL GWAS1595699 (human)2e-12body mass indexbody mass index (BMI) (CMO:0000105)9133613233133613234Human
597377565GWAS1473639_Hsmoking behavior QTL GWAS1473639 (human)4e-08smoking behavior9133613233133613234Human
597465940GWAS1562014_Hcigarettes per day measurement QTL GWAS1562014 (human)6e-11cigarettes per day measurement9133613233133613234Human
597465942GWAS1562016_Htobacco smoke exposure measurement QTL GWAS1562016 (human)2e-21tobacco smoke exposure measurement9133613233133613234Human
597460339GWAS1556413_Hsmoking cessation QTL GWAS1556413 (human)4e-12smoking cessation9133613233133613234Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1473639_H GCST000666 Smoking behavior Up to 74,035 European ancestry individuals G 0.84 4E-8 7.398 rs3025343 1.12 smoking behavior (EFO:0004318)
PMID:20418890
GWAS1556413_H GCST007604 Smoking cessation 121,543 European and South Asian ancestry individuals A NR 4E-12 11.398 rs3025343 0.039 smoking cessation (EFO:0004319)
PMID:30617275
GWAS1562014_H GCST008809 Smoking behaviour (cigarettes smoked per day) up to 153,918 European ancestry individuals A 0.117 6E-11 10.222 rs3025343 0.0368 cigarettes per day measurement (EFO:0006525)
PMID:30679032
GWAS1562016_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals A 0.114 2E-21 20.699 rs3025343 0.0501 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
GWAS1593480_H GCST90243985 Smoking initiation 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals A 0.102 3E-18 17.523 rs3025343 0.0117 smoking initiation (EFO:0005670)
PMID:36477530
GWAS1595699_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 2E-12 11.699 rs3025343 0.0148 body mass index (EFO:0004340)
PMID:36581621
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference