GWAS1488511_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1488511_H (persistent Staphylococcus aureus carrier status QTL GWAS1488511 (human)) Homo sapiens

Symbol: GWAS1488511_H
Name: persistent Staphylococcus aureus carrier status QTL GWAS1488511 (human)
RGD ID: 597392437
Trait: response to bacterial infection trait   (VT:0010435)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381135,299,333 - 35,299,334RGD_MAPPER_PIPELINEGRCh38
GRCh371135,320,880 - 35,320,881RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1488511_HHumanresponse to bacterial infection trait  IAGPrs2421770405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1488511_HHumanpersistent Staphylococcus aureus carrier status  IAGPrs2421770405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732300SLC1A2solute carrier family 1 member 2113525120535420507Human

Position Markers

Peak: (rs2421770)
Human AssemblyChrPosition (strand)Source
GRCh381135,299,333 - 35,299,334RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
597392437GWAS1488511_Hpersistent Staphylococcus aureus carrier status QTL GWAS1488511 (human)0.000008response to bacterial infection trait (VT:0010435)113529933335299334Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1488511_H GCST003182 Staphylococcus aureus nasal carriage (persistent) 141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals C 0.62 0.000008 5.097 rs2421770 1.83 persistent Staphylococcus aureus carrier status (EFO:0007757)
 PMID:26569114
Database Acc Id Source(s)
GWAS Catalog GCST003182 GWAS Catalog

RGD Curation Notes
Note Type Note Reference