GWAS1275772_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1275772_H (bactericidal permeability-increasing protein measurement QTL GWAS1275772 (human)) Homo sapiens

Symbol: GWAS1275772_H
Name: bactericidal permeability-increasing protein measurement QTL GWAS1275772 (human)
RGD ID: 597179698
Trait: neutrophil phagocytosis trait   (VT:0002467)    
LOD Score: Not Available
P Value: 1.0E-50
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382038,350,670 - 38,350,671RGD_MAPPER_PIPELINEGRCh38
GRCh372036,979,073 - 36,979,074RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1275772_HHumanneutrophil phagocytosis trait  IAGPrs118051921405850206 GWAS_CATALOGPMID:34648354

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1275772_HHumanbactericidal permeability-increasing protein measurement  IAGPrs118051921405850206 GWAS_CATALOGPMID:34648354
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1347766LBPlipopolysaccharide binding protein203834648238377013Human

Position Markers

Peak: (rs118051921)
Human AssemblyChrPosition (strand)Source
GRCh382038,350,670 - 38,350,671RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597179698GWAS1275772_Hbactericidal permeability-increasing protein measurement QTL GWAS1275772 (human)1e-50neutrophil phagocytosis trait (VT:0002467)203835067038350671Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1275772_H GCST90246731 Bactericidal permeability-increasing protein levels 10,708 European ancestry individuals A 0.03 1E-50 50 rs118051921 0.651 bactericidal permeability-increasing protein measurement (EFO:0020172)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90246731 GWAS Catalog

RGD Curation Notes
Note Type Note Reference