GWAS1189650_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1189650_H (persistent Staphylococcus aureus carrier status QTL GWAS1189650 (human)) Homo sapiens

Symbol: GWAS1189650_H
Name: persistent Staphylococcus aureus carrier status QTL GWAS1189650 (human)
RGD ID: 597093576
Trait: response to bacterial infection trait   (VT:0010435)    
LOD Score: Not Available
P Value: 8.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh389109,367,495 - 109,367,496RGD_MAPPER_PIPELINEGRCh38
GRCh379112,129,775 - 112,129,776RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1189650_HHumanresponse to bacterial infection trait  IAGPrs138799235405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1189650_HHumanpersistent Staphylococcus aureus carrier status  IAGPrs138799235405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs138799235)
Human AssemblyChrPosition (strand)Source
GRCh389109,367,495 - 109,367,496RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597093576GWAS1189650_Hpersistent Staphylococcus aureus carrier status QTL GWAS1189650 (human)0.0000008response to bacterial infection trait (VT:0010435)9109367495109367496Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1189650_H GCST003182 Staphylococcus aureus nasal carriage (persistent) 141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals C 0.09 8E-7 6.097 rs138799235 3.0 persistent Staphylococcus aureus carrier status (EFO:0007757)
 PMID:26569114
Database Acc Id Source(s)
GWAS Catalog GCST003182 GWAS Catalog

RGD Curation Notes
Note Type Note Reference