GWAS1173954_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1173954_H (tobacco smoke exposure measurement, cleft lip QTL GWAS1173954 (human)) Homo sapiens

Symbol: GWAS1173954_H
Name: tobacco smoke exposure measurement, cleft lip QTL GWAS1173954 (human)
RGD ID: 597077880
Trait: tobacco smoke exposure measurement, cleft lip
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38896,095,722 - 96,095,723RGD_MAPPER_PIPELINEGRCh38
GRCh37897,107,950 - 97,107,951RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
cleft lip  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Cleft lip  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs10106898)
Human AssemblyChrPosition (strand)Source
GRCh38896,095,722 - 96,095,723RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597077880GWAS1173954_Htobacco smoke exposure measurement, cleft lip QTL GWAS1173954 (human)0.000004tobacco smoke exposure measurement, cleft lip89609572296095723Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1173954_H GCST005654 Cleft lip with or without cleft palate (maternal periconceptional cigarette smoking interaction) up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios ? NR 0.000004 5.398 rs10106898 3.448276 tobacco smoke exposure measurement (EFO:0009115)
cleft lip (EFO:0003959)
PMID:29535761
Database Acc Id Source(s)
GWAS Catalog GCST005654 GWAS Catalog

RGD Curation Notes
Note Type Note Reference