GWAS1126849_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1126849_H (tobacco smoke exposure measurement QTL GWAS1126849 (human)) Homo sapiens

Symbol: GWAS1126849_H
Name: tobacco smoke exposure measurement QTL GWAS1126849 (human)
RGD ID: 597030775
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381729,120,887 - 29,120,888RGD_MAPPER_PIPELINEGRCh38
GRCh371727,447,905 - 27,447,906RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1126849_HHumantobacco smoke exposure measurement  IAGPrs12601994405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605490MYO18Amyosin XVIIIA172907112229180398Human

Position Markers

Peak: (rs12601994)
Human AssemblyChrPosition (strand)Source
GRCh381729,120,887 - 29,120,888RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597030775GWAS1126849_Htobacco smoke exposure measurement QTL GWAS1126849 (human)2e-08tobacco smoke exposure measurement172912088729120888Human
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1126849_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals T 0.156 2E-8 7.699 rs12601994 0.0288 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference