GWAS1126806_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1126806_H (tobacco smoke exposure measurement QTL GWAS1126806 (human)) Homo sapiens

Symbol: GWAS1126806_H
Name: tobacco smoke exposure measurement QTL GWAS1126806 (human)
RGD ID: 597030732
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381669,938,583 - 69,938,584RGD_MAPPER_PIPELINEGRCh38
GRCh371669,972,486 - 69,972,487RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1126806_HHumantobacco smoke exposure measurement  IAGPrs9302605405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1320797WWP2WW domain containing E3 ubiquitin protein ligase 2166976233269941739Human

Position Markers

Peak: (rs9302605)
Human AssemblyChrPosition (strand)Source
GRCh381669,938,583 - 69,938,584RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597030732GWAS1126806_Htobacco smoke exposure measurement QTL GWAS1126806 (human)6e-09tobacco smoke exposure measurement166993858369938584Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1126806_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals A 0.771 6E-9 8.222 rs9302605 0.0256 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference