GWAS1126804_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1126804_H (tobacco smoke exposure measurement QTL GWAS1126804 (human)) Homo sapiens

Symbol: GWAS1126804_H
Name: tobacco smoke exposure measurement QTL GWAS1126804 (human)
RGD ID: 597030730
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814103,680,084 - 103,680,085RGD_MAPPER_PIPELINEGRCh38
GRCh3714104,146,421 - 104,146,422RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1126804_HHumantobacco smoke exposure measurement  IAGPrs4900590405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352040KLC1kinesin light chain 114103629211103701544Human

Position Markers

Peak: (rs4900590)
Human AssemblyChrPosition (strand)Source
GRCh3814103,680,084 - 103,680,085RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597030730GWAS1126804_Htobacco smoke exposure measurement QTL GWAS1126804 (human)3e-09tobacco smoke exposure measurement14103680084103680085Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1126804_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals T 0.324 3E-9 8.523 rs4900590 0.0234 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference