GWAS1126801_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1126801_H (tobacco smoke exposure measurement QTL GWAS1126801 (human)) Homo sapiens

Symbol: GWAS1126801_H
Name: tobacco smoke exposure measurement QTL GWAS1126801 (human)
RGD ID: 597030727
Trait: tobacco smoke exposure measurement
LOD Score: Not Available
P Value: 3.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38732,233,495 - 32,233,496RGD_MAPPER_PIPELINEGRCh38
GRCh37732,273,107 - 32,273,108RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1126801_HHumantobacco smoke exposure measurement  IAGPrs7806224405850206 GWAS_CATALOGPMID:30679032
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68463PDE1Cphosphodiesterase 1C73161677732428224Human

Position Markers

Peak: (rs7806224)
Human AssemblyChrPosition (strand)Source
GRCh38732,233,495 - 32,233,496RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597030727GWAS1126801_Htobacco smoke exposure measurement QTL GWAS1126801 (human)3e-16tobacco smoke exposure measurement73223349532233496Human
597031437GWAS1127511_Hcigarettes per day measurement QTL GWAS1127511 (human)1e-10cigarettes per day measurement73223349532233496Human
2289453BW297_HBody weight QTL 297 (human)3.83Body weightbody mass index72334946449349464Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1126801_H GCST008803 Smoking behaviour (cigarette pack-years) up to 150,993 European ancestry individuals C 0.375 3E-16 15.523 rs7806224 0.0287 tobacco smoke exposure measurement (EFO:0009115)
PMID:30679032
GWAS1127511_H GCST008809 Smoking behaviour (cigarettes smoked per day) up to 153,918 European ancestry individuals C 0.371 1E-10 10 rs7806224 0.0244 cigarettes per day measurement (EFO:0006525)
PMID:30679032
Database Acc Id Source(s)
GWAS Catalog GCST008803 GWAS Catalog

RGD Curation Notes
Note Type Note Reference