Bss102 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bss102 (Bone structure and strength QTL 102) Rattus norvegicus

Symbol: Bss102
Name: Bone structure and strength QTL 102
RGD ID: 5684999
Trait: tibia strength trait   (VT:1000284)    
Measurement Type: tibia stiffness   (CMO:0001735)    
LOD Score: 5.5
P Value: 7.2E-7
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr816,909,353 - 51,909,353RGD_MAPPER_PIPELINE
mRatBN7.2115,431,621 - 49,361,612RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0116,143,143 - 49,547,474RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0117,683,508 - 50,204,515RGDRnor5.0
RGSC_v3.4115,999,377 - 43,840,628RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bss102Rattibia stiffness  IDA 5684953 RGD 

Experimental Condition
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bss102Ratcontrol condition  IDA 5684953 RGD 

Measurement Method
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bss102Ratbone three-point bending test  IDA 5684953 RGD 

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bss102RatF344/DuCrlSwe  IEA 5684953 RGD 
Bss102RatGK/KyoSwe  IEA 5684953 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Bss102Rattibia strength trait  IDA 5684953 RGD 

Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification of candidate gene regions in the rat by co-localization of QTLs for bone density, size, structure and strength. Lagerholm S, etal., PLoS One. 2011;6(7):e22462. Epub 2011 Jul 27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69436Synj2synaptojanin 214651859446621919Rat
62024Rps12ribosomal protein S1212168085421683010Rat
3732Sod2superoxide dismutase 214763831847645163Rat
619706Ptprkprotein tyrosine phosphatase, receptor type, K11673889617236687Rat
2581Esr1estrogen receptor 114110633541499104Rat
61797Prknparkin RBR E3 ubiquitin protein ligase14868865149882520Rat
619965Adcy2adenylate cyclase 213437563934822252Rat
2150Arg1arginase 112047587820488422Rat
70494Terttelomerase reverse transcriptase12963721329659561Rat
3757Srd5a1steroid 5 alpha-reductase 113368606933720468Rat
3832Tcp1t-complex 114782906147836809Rat
69352Slc6a18solute carrier family 6 member 1812960728829621925Rat
3234Oprm1opioid receptor, mu 114316005743413409Rat
3049Mas1MAS1 proto-oncogene, G protein-coupled receptor14787995647911500Rat
621016Pde7bphosphodiesterase 7B11517400115493267Rat
631382Taar4trace amine-associated receptor 412148105021482093Rat
631385Taar7htrace amine-associated receptor 7h12137349321374569Rat
631386Taar8btrace amine-associated receptor 8B12130297821307489Rat
631388Taar7gtrace amine-associated receptor 7g12138736021388436Rat
631391Taar8atrace amine associated receptor 8A12133276321333887Rat
631395Taar7dtrace-amine-associated receptor 7d12140932521410401Rat
620523Tcf21transcription factor 2112270135322704212Rat
621621Taar1trace-amine-associated receptor 112151774221518740Rat
631390Taar8ctrace amine-associated receptor 8C12128984321290877Rat
631392Taar7btrace amine-associated receptor 7b12144083221441908Rat
631387Taar7atrace amine-associated receptor 7a12145093321452009Rat
631394Taar7etrace-amine-associated receptor 7e12140171621402792Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112069874620763741Rat
631383Taar9trace amine-associated receptor 912127497221275988Rat
708511Enpp3ectonucleotide pyrophosphatase/phosphodiesterase 312056370020635044Rat
621405Hey2hes-related family bHLH transcription factor with YRPW motif 212682213126832218Rat
61936Slc22a2solute carrier family 22 member 214812106148163268Rat
621647Vipvasoactive intestinal peptide14206487842073219Rat
621557Sdhasuccinate dehydrogenase complex flavoprotein subunit A12893596528960936Rat
621603Hint3histidine triad nucleotide binding protein 312703593627045799Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12139567621396564Rat
620538Ppp1r14cprotein phosphatase 1, regulatory (inhibitor) subunit 14c13977340339886970Rat
620546Syne1spectrin repeat containing nuclear envelope protein 114151214641983382Rat
631384Taar6trace amine-associated receptor 612145847521459512Rat
619916Agpat41-acylglycerol-3-phosphate O-acyltransferase 414852513148633798Rat
621161Ezrezrin14696796147011505Rat
727955Ldhal6blactate dehydrogenase A-like 6B14599784545999268Rat
727795Tfb1mtranscription factor B1, mitochondrial14411524044161737Rat
727798Trmt11tRNA methyltransferase 11 homolog12705443727109765Rat
621392Ccn2cellular communication network factor 212080219920805315Rat
619856Trdntriadin12395565124410494Rat
2871Igf2rinsulin-like growth factor 2 receptor14797910948067501Rat
3224Slc22a1solute carrier family 22 member 114807665748103679Rat
708504Arid1bAT-rich interaction domain 1B14556799145923644Rat
1303071Akap7A-kinase anchoring protein 712008719020217799Rat
3720Slc9a3solute carrier family 9 member A312912463329167912Rat
3715Slc6a3solute carrier family 6 member 312970944329750413Rat
621790Exoc3exocyst complex component 312909129829122056Rat
1306836Rnf217ring finger protein 21712601666826108736Rat
619747Stx7syntaxin 712119707521237320Rat
620261Dynlt1dynein light chain Tctex-type 114688701746893956Rat
3701Slc22a3solute carrier family 22 member 314823547648324617Rat
1307525Kiaa0408LKiaa0408-like12861560028630309Rat
1308544Cfap90cilia and flagella associated protein 9013482589434849916Rat
1306375Mrpl36mitochondrial ribosomal protein L3612996548129968896Rat
1307311Mthfd1lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like14044392640632911Rat
1307896Clptm1lCLPTM1-like12966754529683530Rat
1305053Arhgap18Rho GTPase activating protein 1811840353118637306Rat
1307356Tent4aterminal nucleotidyltransferase 4A13376594933799405Rat
1307359Brd9bromodomain containing 912932998129357285Rat
738049Mas1lMAS1 proto-oncogene like, G protein-coupled receptor14787159247879942Rat
3668Sgk1serum/glucocorticoid regulated kinase 112298025723098122Rat
1308509Hbs1lHBS1-like translational GTPase11609252916170082Rat
1308516Trip13thyroid hormone receptor interactor 1312935709329402078Rat
1310121Tppptubulin polymerization promoting protein12925711129281134Rat
735159Ipcef1interaction protein for cytohesin exchange factors 114323790343451735Rat
1306801Clvs2clavesin 212373566023842685Rat
1306387Mrpl18mitochondrial ribosomal protein L1814783716947841987Rat
708362Scaf8SR-related CTD-associated factor 814372768643855889Rat
1310175Slc2a12solute carrier family 2 member 1212280306822862204Rat
1308678Pnldc1PARN like ribonuclease domain containing exonuclease 114784322447861675Rat
1309747Ice1interactor of little elongation complex ELL subunit 113264037232682669Rat
1309546Rmnd1required for meiotic nuclear division 1 homolog14085982940894376Rat
1309729Fastkd3FAST kinase domains 313485834234866988Rat
1311306Rsph3radial spoke head 314710196147155201Rat
1311467Myct1myc target 114201813742029410Rat
1359185Taar5trace amine-associated receptor 512146992321470936Rat
1308671Mtrr5-methyltetrahydrofolate-homocysteine methyltransferase reductase13486699134899425Rat
1311459Nkd2NKD inhibitor of WNT signaling pathway 212944289829470839Rat
1310640Fndc1fibronectin type III domain containing 114728183947364247Rat
1305235Armt1acidic residue methyltransferase 114089455840918302Rat
1306482Rnf146ring finger protein 14612845886428475758Rat
1307544Cnksr3Cnksr family member 314349927343591630Rat
1309405Fbxo5F-box protein 514219606842202437Rat
1309309Irx4iroquois homeobox 413003056130039549Rat
1306962Slc18b1solute carrier family 18 member B112162823521670807Rat
1310945Ccdc170coiled-coil domain containing 17014094560741050010Rat
1309288Iydiodotyrosine deiodinase14000399940019323Rat
1307671Med23mediator complex subunit 2312049031520558461Rat
1307562Hddc2HD domain containing 212629403026313914Rat
1310075Vnn1vanin 112153708421547395Rat
1309834Irx2iroquois homeobox 213066096030666378Rat
1309060Irx1iroquois homeobox 113129461531300444Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412217227522415978Rat
1307262Tmem242transmembrane protein 24214599271346019684Rat
1306621Zbtb2zinc finger and BTB domain containing 214082745740846733Rat
1305474L3mbtl3L3MBTL histone methyl-lysine binding protein 311898876319089247Rat
1310128Med10mediator complex subunit 1013347006433481698Rat
1308889Lama2laminin subunit alpha 211767267518320641Rat
1308618TagapT-cell activation RhoGTPase activating protein14717072547179705Rat
1310033Moxd1monooxygenase, DBH-like 112107512421165348Rat
1305515Rgs17regulator of G-protein signaling 1714222224842324625Rat
1310046Adamts16ADAM metallopeptidase with thrombospondin type 1 motif, 1613243043632562481Rat
1359672Slc12a7solute carrier family 12 member 712947269229554246Rat
1311239Pdcd6programmed cell death 612896651828982188Rat
1311240Taar2trace amine associated receptor 212150029021504259Rat
1303040Ahi1Abelson helper integration site 111576248515891213Rat
70988Akap12A-kinase anchoring protein 1214073012340819863Rat
1560234Rsrc1-ps3arginine and serine rich coiled-coil 1, pseudogene 314364087643641971Rat
1564382Spry3-ps1sprouty RTK signaling antagonist 3, pseudogene 113515836535158967Rat
1561992Sytl3synaptotagmin-like 314689630846967461Rat
1566426Ncoa7nuclear receptor coactivator 712685622827016950Rat
1565064Serac1serine active site containing 114662074146656801Rat
1303190Nox3NADPH oxidase 314423801244302851Rat
1564487Tulp4TUB like protein 414668241646813167Rat
1565215Rpl26-ps2ribosomal protein L26, pseudogene 212891793728918420Rat
1562948Acat2l1acetyl-CoA acetyltransferase 2-like 114780382247829012Rat
1560015Tecrl2trans-2,3-enoyl-CoA reductase like 214726364747264682Rat
1560020MybMYB proto-oncogene, transcription factor11593977115973367Rat
1560849Themisthymocyte selection associated11643390616623889Rat
1564281Zdhhc11zinc finger, DHHC-type containing 1112929633429327227Rat
1563246Rspo3R-spondin 312828391428368661Rat
1560991Gtf2h5general transcription factor IIH subunit 514665680446663512Rat
1311933Leg1liver enriched gene 112879990228816230Rat
1359258Taar7ctrace amine-associated receptor 7C12142936421430440Rat
1311954Nsun2NOP2/Sun RNA methyltransferase 213366213933685887Rat
1559857Ahrraryl-hydrocarbon receptor repressor12899363429088673Rat
1563824WtapWT1 associated protein14766596547691067Rat
1564024Tmem200atransmembrane protein 200A11932364619408324Rat
1359654Echdc1ethylmalonyl-CoA decarboxylase 112847635428507173Rat
1559962Hmgb2-ps6high mobility group box 2, pseudogene 611940916119410260Rat
1560609Vnn3vanin 312157136421583626Rat
1311599Lpcat1lysophosphatidylcholine acyltransferase 112976607029816401Rat
1311192Map3k4mitogen activated protein kinase kinase kinase 414843180148519358Rat
619893Plgplasminogen14832518648367643Rat
735106Ccdc127coiled-coil domain containing 12712892842028935885Rat
1359566Taar3trace amine-associated receptor 312149153821492566Rat
1583514LOC681177similar to GTPase activating protein testicular GAP113567520035781741Rat
1586689Calm1-ps2calmodulin 1, pseudogene 211971054019711425Rat
1584748Cycsl1cytochrome c, somatic like 114039100640392349Rat
1584766Brms1-ps1BRMS1, transcriptional repressor and anoikis regulator, pseudogene 114039663240399871Rat
1566403Tmem181transmembrane protein 18114683081246885173Rat
1583609Dlat-ps1dihydrolipoamide S-acetyltransferase, pseudogene 113323121133233823Rat
1587241Zfp273l-ps1zinc finger protein 273 like, pseudogene 113522232535238553Rat
1562524Rpl27l6ribosomal protein L27 like 614254115942541467Rat
1583676Plekhg1pleckstrin homology and RhoGEF domain containing G114034868440434063Rat
1564978Lrrc14bleucine rich repeat containing 14B12892147528925646Rat
1566336Cep72centrosomal protein 7212922531229255294Rat
1566284Hnrnpa1-ps47heterogeneous nuclear ribonucleoprotein A1, pseudogene 4713960157639603128Rat
1566325Zfp874bzinc finger protein 874b13500232135014324Rat
1563977Epb41l2erythrocyte membrane protein band 4.1-like 211986301020037795Rat
1565877Zdhhc14zinc finger DHHC-type palmitoyltransferase 1414606912746340806Rat
1359366Acat2acetyl-CoA acetyltransferase 214769583347713879Rat
1594328Slc6a19solute carrier family 6 member 1912958619129604964Rat
1589982Ahcy-ps10adenosylhomocysteinase, pseudogene 1012032070620322406Rat
1589454Atp5f1c-ps1ATP synthase F1 subunit gamma, pseudogene 114740725947408527Rat
1590840Hnrnpa1-ps18heterogeneous nuclear ribonucleoprotein A1, pseudogene 1813400507334006590Rat
1590841Rpl10a-ps11ribosomal protein L10A, pseudogene 1113120294431203499Rat
1590218Aldh8a1aldehyde dehydrogenase 8 family, member A111618394016203385Rat
1589061Rplp0-ps4ribosomal protein lateral stalk subunit P0, pseudogene 411735763717358522Rat
1586034Dnaja4-ps1DnaJ heat shock protein family (Hsp40) member A4, pseudogene 112732226827323406Rat
1586664Smlr1small leucine-rich protein 111983739019858906Rat
1587834Samd3sterile alpha motif domain containing 311910076719148241Rat
1586097Nt5c2-ps25'-nucleotidase, cytosolic II, pseudogene 214269972042701497Rat
1586100Rab1-ps1RAB1, member RAS oncogene family, pseudogene 113879930038800803Rat
1586104Hdac1-ps17Histone deacetylase 1, pseudogene 1712801008128010909Rat
1586105Hnrnpa1-ps43heterogeneous nuclear ribonucleoprotein A1, pseudogene 4312675747026758537Rat
1586106Sec24c-ps2SEC24 homolog C, COPII coat complex component, pseudogene 212671385926716732Rat
1586108Zbed4-ps1zinc finger, BED-type containing 4, pseudogene 112390376923906388Rat
1586110Ruvbl1-ps2RuvB-like AAA ATPase 1, pseudogene 211751953517521754Rat
1589918Bcl2l13-ps1Bcl2-like 13, pseudogene 112889484128901203Rat
1584466Snx9sorting nexin 914642489746510096Rat
1584802Ndufs6NADH:ubiquinone oxidoreductase subunit S612996883329977423Rat
1587386Fth1-ps4ferritin heavy chain 1, pseudogene 412363807123638977Rat
1587036Dut-psdeoxyuridine triphosphatase pseudogene14836874848369608Rat
1595446Cldn20claudin 2014413376944134428Rat
1597456Tbpl1TATA-box binding protein like 112277789222803305Rat
1593465Cenpwcentromere protein W12752532427530464Rat
1593979Zfp58zinc finger protein 5813502047735053203Rat
1593144Hnrnpa1-ps10heterogeneous nuclear ribonucleoprotein A1, pseudogene 1014818954448190737Rat
1593145Rpl13a-ps12ribosomal protein L13A, pseudogene 1214288511242885723Rat
1593146Mrpl30-ps10mitochondrial ribosomal protein L30, pseudogene 1012106800321068796Rat
1597161LOC301792clone rb2 rab1a related protein pseudogene13639757136398662Rat
1594836Dr1-ps1down-regulator of transcription 1, pseudogene 112564945525650368Rat
1594796Tpd52l1TPD52 like 112617203826290704Rat
1594173Zfp729bzinc finger protein 729b13510273235137107Rat
1595500Psma7-ps1proteasome 20S subunit alpha 7, pseudogene 113432412834324855Rat
1595505Lims1-ps1LIM zinc finger domain containing 1, pseudogene 114343510143436082Rat
1595515Ap2b1-ps1adaptor related protein complex 2 subunit beta 1, pseudogene 113429219034295856Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12135270821353774Rat
1598121Ube2ql1ubiquitin conjugating enzyme E2 QL113354881433589174Rat
1598312Mtrf1lmitochondrial translation release factor 1 like14220855342221020Rat
1598314Rbs10l2ribosomal protein S10 like 211894812418948790Rat
1594231Zfp455l1zinc finger protein 455 like 113486693434944939Rat
2321467Tpt1l3tumor protein, translationally-controlled 1 like 311910738919108208Rat
2321841Ccnb2-ps2cyclin B2, pseudogene 212009973220101236Rat
2324102Mrpl46-ps1mitochondrial ribosomal protein L46, pseudogene 114484687344856699Rat
2324148Tiam2TIAM Rac1 associated GEF 214391817944119499Rat
2324149LOC100362709proteasome activator complex subunit 2-like13472220534723042Rat
6493251Nid2-ps2nidogen 2, pseudogene 213593681635964021Rat
6494479Zfp502zinc finger protein 50212888439028908726Rat
6495554Ppid-ps12peptidylprolyl isomerase D, pseudogene 1213406515534070734Rat
6499508LOC100910237uncharacterized LOC10091023712167994021680668Rat
7514941Cd99l3CD99 molecule like 313931585739600133Rat
7532311LOC102553363uncharacterized LOC10255336312064633620663699Rat
7511239LOC102546606uncharacterized LOC10254660614272165642725386Rat
7511531LOC102552728uncharacterized LOC10255272812007906220087734Rat
7650092LOC102553526uncharacterized LOC10255352612093016520935165Rat
7636033Arf1-ps5ADP-ribosylation factor 1, pseudogene 512859712228600478Rat
7558063Tmem127-ps1transmembrane protein 127, pseudogene 114413524944138115Rat
7624072LOC102553457uncharacterized LOC10255345712093516520952028Rat
7630011Mapre1-ps1microtubule-associated protein, RP/EB family, member 1, pseudogene 114054595940552212Rat
7570512LOC102548198uncharacterized LOC10254819814507748945100267Rat
7571387LOC102548472uncharacterized LOC10254847214551254745515991Rat
7620815LOC102551987uncharacterized LOC10255198714723466447246436Rat
7544841LOC102555832uncharacterized LOC10255583213967915439685439Rat
7600894Zfp748zinc finger protein 74813507540835091416Rat
7563457LOC102553224uncharacterized LOC10255322414821483448221581Rat
7551033LOC102546790uncharacterized LOC10254679014299602243017130Rat
7734973Nid2l2nidogen 2 like 213862589138700200Rat
7704848Znf726l-ps1zinc finger protein 726 like, pseudogene 113495272434955509Rat
7683242LOC102553528uncharacterized LOC10255352814769055147695815Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212466862725877051Rat
7718701LOC102547287zinc finger protein 728-like13505253535063324Rat
7744936Amn1-ps1antagonist of mitotic exit network 1, pseudogene 111653730916537787Rat
7746808Zfpl2zinc finger protein like 212886591728875433Rat
7747355LOC102548409uncharacterized LOC10254840914549136645497049Rat
7678966LOC102555465uncharacterized LOC10255546512257657822594738Rat
7681875LOC102553527uncharacterized LOC10255352713109632531105986Rat
9078384LOC103690946activated RNA polymerase II transcriptional coactivator p15 pseudogene12963011729632569Rat
9075724LOC103690928U6 snRNA-associated Sm-like protein LSm5 pseudogene11846343218469878Rat
9168471LOC103690969uncharacterized LOC10369096914738140247429212Rat
9225009Ube2n-ps4ubiquitin-conjugating enzyme E2N, pseudogene 414274362642748575Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12379865323799648Rat
9344246LOC10369095160S ribosomal protein L34 pseudogene13500559135008025Rat
11364129LOC10834973040S ribosomal protein S20 pseudogene13275477832761865Rat
11455515LOC108348755uncharacterized LOC10834875513351530533523055Rat
11446120LOC108349507uncharacterized LOC10834950712907865029084116Rat
11464132LOC10834944240S ribosomal protein S15a pseudogene13364139933642354Rat
11465027Leg1-ps1liver enriched gene 1, pseudogene 112857121028583888Rat
11437209Rpl36a-ps17ribosomal protein L36A, pseudogene 1712111964521120113Rat
11437431LOC108349187uncharacterized LOC10834918712123747721243704Rat
11363865LOC10834900860S ribosomal protein L7a pseudogene11653594916536761Rat
11365258LOC108349443uncharacterized LOC10834944312185917221870434Rat
11451513LOC108349392uncharacterized LOC10834939213328716733302936Rat
11368566LOC108349099uncharacterized LOC10834909914858077048591834Rat
11368884LOC108349236uncharacterized LOC10834923612310406023112500Rat
11452897Rps29-ps21ribosomal protein S29, pseudogene 2112126179721262125Rat
11414134LOC108348899uncharacterized LOC10834889912348657323493321Rat
11415566Trnae-cuc1transfer RNA glutamic acid (anticodon CUC) 112684641326846484Rat
11423353LOC108349518uncharacterized LOC10834951814447439944522719Rat
11385252Rpl36a-ps9ribosomal protein L36A, pseudogene 911975479819755162Rat
11375087LOC108349508uncharacterized LOC10834950813217249432206222Rat
11398775LOC10834850860S ribosomal protein L7a pseudogene12765349227655379Rat
11520738LOC10834951760S ribosomal protein L7a pseudogene14029604740296903Rat
11479453Mtcl3MTCL family member 312862903628701416Rat
11496872LOC10834907140S ribosomal protein S27-like12533649425337281Rat
11512463LOC108349469uncharacterized LOC10834946912330225523315783Rat
41235294Trnaa-agc77transfer RNA alanine (anticodon AGC) 7712458968624589766Rat
41355712LOC120099123uncharacterized LOC12009912314791840647923178Rat
41356485Rab1a-ps4RAB1A, member RAS oncogene family, pseudogene 413812763038128295Rat
41087395LOC120099100uncharacterized LOC12009910013518412235188477Rat
41087412Snora20small nucleolar RNA, H/ACA box 2014783054047830669Rat
41357357LOC120098805uncharacterized LOC12009880511688652316887639Rat
41206076Rnu6-959RNA, U6 small nuclear 95914182242541822528Rat
41325772LOC120100129U6 spliceosomal RNA11776047217760578Rat
41090434Rabggtb-ps2Rab geranylgeranyltransferase subunit beta, pseudogene 213374848833751375Rat
41091493LOC120100435small nucleolar RNA SNORA1713311115333111279Rat
41115603LOC120098885uncharacterized LOC12009888512276637922777891Rat
41092135Eif1-ps5eukaryotic translation initiation factor 1, pseudogene 512894424028944805Rat
41092469LOC120100446small nucleolar RNA SNORA1712874163928741754Rat
41146272Rnu11-3RNA, U11 small nuclear 311938143719381570Rat
41327994LOC120097700uncharacterized LOC12009770012778739427789150Rat
41261521LOC120100131U6 spliceosomal RNA12313135023131456Rat
41120638LOC120100362small nucleolar RNA SNORA2413371671333716842Rat
41176576LOC120100395small nucleolar RNA U2-1914221196842212047Rat
41187490Mycbp-ps1Myc binding protein, pseudogene 113403274734033058Rat
41331278LOC120100369small nucleolar RNA SNORA4111567916915679309Rat
41177791LOC120098806uncharacterized LOC12009880611679110416795556Rat
41342237Trnap-agg24transfer RNA proline (anticodon AGG) 2413455371434553795Rat
41393107LOC120099111uncharacterized LOC12009911114427801944357752Rat
41123377LOC120100087uncharacterized LOC12010008713961516839639974Rat
41179892LOC120093155uncharacterized LOC12009315513527185235375055Rat
41191607Rnu6-546RNA, U6 small nuclear 54614704589247045997Rat
41192130Nid2-ps5nidogen 2, pseudogene 513613231736147184Rat
41343633LOC120100475U2 spliceosomal RNA14310999143110055Rat
41124938LOC120100484small nucleolar RNA U1312340034023400445Rat
41102376LOC120100090uncharacterized LOC12010009013849901038527803Rat
41158252LOC120099117uncharacterized LOC12009911714693538246941677Rat
41182833Nid2-ps6nidogen 2, pseudogene 613954880339562954Rat
41183125LOC120098836uncharacterized LOC12009883612056147420565071Rat
41270053LOC120099102rho GTPase-activating protein 20-like13584919135873247Rat
41127918LOC120097709uncharacterized LOC12009770914370756243712250Rat
41219482Mrto4-ps2mRNA turnover 4, ribosome maturation factor, pseudogene 214651482446518112Rat
41270287LOC120099122uncharacterized LOC12009912214772752647730867Rat
41292788LOC120100099uncharacterized LOC12010009914894820948950577Rat
41071539LOC120100143U6 spliceosomal RNA11832812518328231Rat
41104967LOC120097699cytochrome b-c1 complex subunit 10-like11875161218751912Rat
41161183Snora29small nucleolar RNA, H/ACA box 2914783383547833971Rat
41228825Atg4b-ps1autophagy related 4B, cysteine peptidase, pseudogene 111655334516558705Rat
41130940LOC120099109uncharacterized LOC12009910914352558343527559Rat
41198301LOC120098802uncharacterized LOC12009880211556374615573829Rat
41230696Snord100small nucleolar RNA, C/D box 10012168226921682343Rat
41274044LOC120100449small nucleolar RNA SNORA1712761898427619106Rat
41352398LOC120097708uncharacterized LOC12009770814311178143117463Rat
41376744LOC120100178U1 spliceosomal RNA14058664340586804Rat
41109328Rab1a-ps2RAB1A, member RAS oncogene family, pseudogene 213680037436801331Rat
41201839LOC120098986uncharacterized LOC12009898612990898529924691Rat
40996607LOC120099120acetyl-CoA acetyltransferase, cytosolic-like14771719647723781Rat
40948223Nid2-ps13nidogen 2, pseudogene 1313841522738440562Rat
40952154LOC120097710uncharacterized LOC12009771014459645644608059Rat
40955162LOC120098992uncharacterized LOC12009899213117776731197773Rat
40978443LOC120100095uncharacterized LOC12010009513961491439670599Rat
40928345LOC120099124uncharacterized LOC12009912414839474648414438Rat
40955462Trnap-agg33transfer RNA proline (anticodon AGG) 3314672881946728900Rat
40933306LOC120099116uncharacterized LOC12009911614662698446634286Rat
40933802LOC120098871uncharacterized LOC12009887112234033222351065Rat
40985057LOC120100215U7 small nuclear RNA13494816234948226Rat
40962765Rnu6-783RNA, U6 small nuclear 78313480425834804364Rat
40938986Rnu6-1001RNA, U6 small nuclear 100112519679325196899Rat
41010327LOC120099115uncharacterized LOC12009911514605725346062998Rat
40941038Rnu4-5RNA, U4 small nuclear 512544589825446060Rat
40967854LOC120100474small nucleolar RNA SNORD8814129686941296962Rat
40996352Rab1a-ps3RAB1A, member RAS oncogene family, pseudogene 313750936237511163Rat
41312082LOC120100169U6 spliceosomal RNA11624352816243631Rat
41024257Rpl23a-ps3ribosomal protein L23a, pseudogene 311615578316163479Rat
41244766Snora33small nucleolar RNA, H/ACA box 3312168260321682729Rat
41314157LOC120098807uncharacterized LOC12009880711824565718317592Rat
41077590LOC120098893uncharacterized LOC12009889312313267323172438Rat
41078939LOC120098804uncharacterized LOC12009880411672294416736191Rat
41050934LOC120098989uncharacterized LOC12009898912998124829993418Rat
41247671Rnu6-859RNA, U6 small nuclear 85914369158143691678Rat
41248032Npm1-ps5nucleophosmin 1, pseudogene 511800684618007514Rat
41332180Trnav-cac7transfer RNA valine (anticodon CAC) 712512645025126530Rat
41053334Rab1a-ps1RAB1A, member RAS oncogene family, pseudogene 113664225336643958Rat
41053469LOC120097702uncharacterized LOC12009770213260885332613035Rat
41152311LOC120099112uncharacterized LOC12009911214501622045033505Rat
41057629LOC120098995uncharacterized LOC12009899513139434731396128Rat
41220638LOC120100379small nucleolar RNA SNORA2112936727429367411Rat
41258807LOC120100091uncharacterized LOC12010009113901301039029344Rat
41224548Hnrnpa1-ps23heterogeneous nuclear ribonucleoprotein A1, pseudogene 2312838267628386857Rat
41299842LOC120099113uncharacterized LOC12009911314531237845317435Rat
41336906LOC120100462small nucleolar RNA SNORA4014800320648003337Rat
41302774LOC120098808uncharacterized LOC12009880811959611119606529Rat
41064447LOC120099099uncharacterized LOC12009909913498934035015200Rat
41016349LOC120097707uncharacterized LOC12009770714215732742158793Rat
41042088LOC120099033uncharacterized LOC12009903313324656133288412Rat
41067050LOC120100438small nucleolar RNA SNORA1712011976620119889Rat
41307068LOC120100394small nucleolar RNA U2-3014221219042212259Rat
41042371Snord101small nucleolar RNA, C/D box 10112168155721681630Rat
41042460LOC120099118uncharacterized LOC12009911814718362847198482Rat
41043647LOC120100398U2 spliceosomal RNA12047052420470672Rat
41307516LOC120100432small nucleolar RNA SNORA1714844963848449772Rat
41063986LOC120099104uncharacterized LOC12009910413603618236044823Rat
7630698LOC102555830uncharacterized LOC10255583012286840122877359Rat
7579399LOC102554376uncharacterized LOC10255437612216858822169892Rat
7583283LOC102546868uncharacterized LOC10254686812353050623533251Rat
7723368Yes1-ps1YES proto-oncogene 1, Src family tyrosine kinase14336702943372347Rat
7712286LOC102551377uncharacterized LOC10255137714666616746682516Rat
7697243Zfp729zinc finger protein 72913516573235183894Rat
9166062LOC103690972protein LSM12 homolog pseudogene14815397948154524Rat
9220759Rpl30-ps2ribosomal protein L30, pseudogene 214248714542487730Rat
9270734Zbtb2lzinc finger and BTB domain containing 2 like14085412740859896Rat
9302186LOC103690933uncharacterized LOC10369093312170462321734218Rat
11429793LOC108349511uncharacterized LOC10834951113496182534967714Rat
11394768LOC108349732uncharacterized LOC10834973213735354037360813Rat
113875701700020N01RiklRIKEN cDNA 1700020N01 gene like12325955723395640Rat
41095055LOC120097701uncharacterized LOC12009770113015796330160240Rat
40997215Srsf3-ps8serine and arginine rich splicing factor 3, pseudogene 814539120245391657Rat
40964934LOC120100455small nucleolar RNA SNORA1712526492725265029Rat
41030689LOC120100112U4 spliceosomal RNA12774229627742439Rat
41037329LOC120099103uncharacterized LOC12009910313609044736107414Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34433D1Mgh314514580314045803251Ratregion
34465D1Mgh421314896358448963799Ratregion
34662D1Mgh215012234064722340797Ratregion
33660D1Mit914714936146549361612Ratregion
36303D1Rat626511933357119333836Ratregion
37296D1Rat14821111576058215760793Ratregion
37598D1Rat17618513273727332737458Ratregion
35242D1Rat1117514026042240260599Ratregion
35467D1Rat717311543162115431794Ratregion
35517D1Rat1815814926836249268520Ratregion
36968D1Rat9122214678299546783217Ratregion
37974D1Rat21124113105084031051081Ratregion
36550D1Rat1215413349198733492143Ratregion
36590D1Rat16015312845987428460027Ratregion
36626D1Rat1516714343287343433040Ratregion
36640D1Rat1418313235591032356093Ratregion
36651D1Rat1614814223682142236969Ratregion
34973D1Rat1315814079518940795347Ratregion
35685D1Rat1012812469741724697545Ratregion
35853D1Rat912512952149329521616Ratregion
35885D1Rat810012887978028879880Ratregion
38028D1Rat12110312076315820763261Ratregion
38082D1Rat14324614917668849176934Ratregion
38134D15Rat4521814409563844095856Ratregion
40368D1Rat25315314348641943486572Ratregion
40704D1Rat25221112339999023400201Ratregion
38426D1Rat19122514896358448963811Ratregion
38568D1Rat23824613373786933738115Ratregion
38640D1Rat15320712070439820704605Ratregion
38722D1Rat22823214934202849342260Ratregion
38782D1Rat13619514328473143284926Ratregion
40086D1Rat25115112742866727428818Ratregion
39086D1Rat23913413178872531788853Ratregion
39376D1Rat31320714564632545646532Ratregion
42077D1Arb332612234059822340924Ratregion
42264D1Rat46310512220216622202271Ratregion
42265D1Arb518313332442333324606Ratregion
42448D1Rat39220011912178019121980Ratregion
42449D1Rat39123711964618819646425Ratregion
42451D1Rat47920412016619620166426Ratregion
42451D1Rat47920412016622220166426Ratregion
42452D1Rat39419212812535928125552Ratregion
42453D1Rat47821812491183924912057Ratregion
42454D1Rat39320212817879628178996Ratregion
42455D1Rat39721114079516340795374Ratregion
42456D1Rat33017213297220532972379Ratregion
42456D1Rat33017213297220532972816Ratregion
42456D1Rat33017213297229132972379Ratregion
42459D1Rat40021914079512940795348Ratregion
42460D1Rat40222614215750442157730Ratregion
42461D1Rat33212814774692947747057Ratregion
42461D1Rat33212814777221347772342Ratregion
42462D1Rat40314414706848547068629Ratregion
40826D1Rat25421014274504142745251Ratregion
41656D1Rat37716512974323529743400Ratregion
43191D1Got2318011821206118212241Ratregion
43192D1Got2416511863955918639724Ratregion
43193D1Got1115011653480616534956Ratregion
43194D1Got2517111878235418782525Ratregion
43195D1Got1918611727253717272723Ratregion
43196D1Got2220411851322218513426Ratregion
43197D1Got2620612023483820235046Ratregion
43198D1Got2920212232122222321426Ratregion
43200D1Got2714612298244022982586Ratregion
43201D1Got3114612284279422842940Ratregion
43204D1Got3430012833116228331462Ratregion
43205D1Got3725312846122828461481Ratregion
43206D1Got3517912808592828086107Ratregion
43207D1Got5221414613640446136620Ratregion
43208D1Got5119014607517346075361Ratregion
43209D1Got4912714597359745973724Ratregion
43210D1Got5814114626607946266220Ratregion
43211D1Got4719214614925146149443Ratregion
43213D1Got4816014513881245138972Ratregion
43215D1Got5010814455533344555441Ratregion
43216D1Got27416014496580644965966Ratregion
43217D1Got5921014674186346742073Ratregion
43219D1Got6017914832654248326723Ratregion
43220D1Got6124114921817149218412Ratregion
43221D1Got5714414761120647611350Ratregion
43222D1Got5523914836265448362895Ratregion
43661D1Got28325113200363932003890Ratregion
60238D1Got27320212970402129704223Ratregion
60243D1Got3213612629534526295481Ratregion
60244D1Got3618713001973330019920Ratregion
60245D1Got3818512909814429098329Ratregion
60246D1Got3916714212506642125233Ratregion
60247D1Got4014014154927241549412Ratregion
60248D1Got4118114190794141908122Ratregion
60249D1Got4213914368105343681192Ratregion
60250D1Got4315914220475342204912Ratregion
60251D1Got4426414266269242662956Ratregion
60252D1Got4512314220475642204879Ratregion
60253D1Got4614514401122144011366Ratregion
66403D1Mco421412903803729038251Ratregion
66617D1Mco4023114487495644875187Ratregion
66688D1Uia1520112867125728671458Ratregion
67242D1Arb425414023688040237138Ratregion
67244D1Arb713814319187143192009Ratregion
1631110D1Got30414514095149740951644Ratregion
1632082D1Cebr1018812991673329916921Ratregion
1626786D1Mco7525013276550232766175Ratregion
1626786D1Mco7525013276592532766175Ratregion
1627243D1Mco7217412580818825808362Ratregion
1627347D1Mco7324813006477630065024Ratregion
1627499D1Mco7419613193062231930818Ratregion
1627856D17Got21514913248534932485498Ratregion
1628396D17Got22215213110931331109465Ratregion
1629265D1Got3029414605990546059999Ratregion
1629318D1Cebr1116412951554529515709Ratregion
1629386D1Wox8215012405052124050671Ratregion
1629572D1Got37422214792179647922011Ratregion
1638813D1Got30517313230874832308921Ratregion
1641531D1Wox5114312970884929708992Ratregion
1633578D1Wox4520613332442833324634Ratregion
1639850D1Got43924513699110336991380Ratregion
1640652D1Got43320612558681925587025Ratregion
1635563D1Got3019111860661118606702Ratregion
1636018D1Cebr722614659160346591829Ratregion
1636822D1Got36314712624678026246927Ratregion
1636991D1Cebr927214746739147467665Ratregion
1637068D17Got2219613075895930759055Ratregion
1637170D1Cebr218814660473246604922Ratregion
1637228D1Cebr1220312950620229506405Ratregion
1637337D1Got3038612821629328216379Ratregion
1632478D17Got22430013204344432043744Ratregion
2315138D1Mco12224813294179832942046Ratregion
2315140D1Mco12321913298979032990009Ratregion
2315142D1Mco10919613247778632477938Ratregion
2315142D1Mco10919613247778632477982Ratregion
2315144D1Mco11519313271591432716107Ratregion
2315146D1Mco12020613291597532916181Ratregion
2315148D1Mco11215013256248432562634Ratregion
2315150D1Mco10417913228523332285412Ratregion
2315152D1Mco11016613250438532504551Ratregion
2315154D1Mco12117313294091832941007Ratregion
2315154D1Mco12117313294091832941091Ratregion
2315156D1Mco11316713260079432600959Ratregion
2315158D1Mco12419113298981832990009Ratregion
2315160D1Mco12916413303865033038814Ratregion
2315162D1Mco10218413224973532249921Ratregion
2315164D1Mco11417513267188732672062Ratregion
2315166D1Mco12617113301522333015396Ratregion
2315168D1Mco12715113301728333017434Ratregion
2315170D1Mco10818613244265532442841Ratregion
2315176D1Mco13019413303938833039582Ratregion
2315178D1Mco12519313299308932993282Ratregion
2315180D1Mco11615713276659832766755Ratregion
2315182D1Mco11816713282541632825585Ratregion
2315184D1Mco10614813242914032429288Ratregion
2315186D1Mco10518813233341032333598Ratregion
2315188D1Mco12816813301730433017472Ratregion
2315190D1Mco11719213278412632784318Ratregion
2315192D1Mco10315113227305632273209Ratregion
2315194D1Mco10715013243322532433375Ratregion
7191234Ap2b133113429260534292936Ratregion
5035813PMC197251P116413785209837852262Ratregion
5035839PMC22491P150012010043920100939Ratregion
5035865PMC262378P113913066445730664596Ratregion
5038614Vnn111612154381021543926Ratregion
5035923PMC310936P110513003437530034480Ratregion
5038688AU01823210114149702541497126Ratregion
5038764RH12731918013429054034290720Ratregion
5036055Tcf2112412270160722701731Ratregion
5036181D13Jpk210913110930031109409Ratregion
5038922RH12741018714696766746967854Ratregion
5036225D5Bwg0676e014815438948154620Ratregion
5039218RH12758019313347015933470352Ratregion
5036492Slc22a241814816313448163552Ratregion
5036787AU04920318213127907331279255Ratregion
5037097STS-T3182118114592327445923455Ratregion
5026048RH13070219814681041846810616Ratregion
7206230Ctgf55712080271020803267Ratregion
5028717SHGC-7410310713785019637850303Ratregion
5031496AU04813218512440911924409304Ratregion
5034185RH14169118512962164429621829Ratregion
5026294RH13166018712946856229468749Ratregion
5026302RH13169119214832524448325436Ratregion
5026424RH13215971414551306745513781Ratregion
5028925RH14284310811994399519944103Ratregion
5029035RH14326718613366437133664557Ratregion
5034486BF40915621514598643145986646Ratregion
5034492BF40931321312629418126294394Ratregion
5026436RH13220421113366392333664134Ratregion
5026558RH13267320113482189834822099Ratregion
5029335RH14440519211852949618529688Ratregion
5034696BF4179949412870146228701556Ratregion
5027159DLAT98413323210833233092Ratregion
5027159DLAT98413323210833233702Ratregion
5027159DLAT98413323299833233092Ratregion
5035244BM38438216012836052728360687Ratregion
5035326BM38495320712023996120240168Ratregion
5027513AI52877214614782918647829332Ratregion
5030197BF40168819312279809822798291Ratregion
5032929RH13699915012179018521790335Ratregion
5025068RH12716024514219659542196840Ratregion
5025114AI46317811413366396533664079Ratregion
5033111RH13763712614696720246967328Ratregion
5033169RH13783620612021605120216257Ratregion
5025148BB27603912514791132547911450Ratregion
5027789RH9474610114123903441239135Ratregion
5027813RH9484312614323258243232708Ratregion
502789725.mHAa3f1.seq18914802637048026559Ratregion
5030483BF39791221312051179220512005Ratregion
5025418RH12824020711616967716169884Ratregion
5030671BE10755917512383759223837767Ratregion
5025494RH12853719712966765229667849Ratregion
5030843BE12063115012946562329465773Ratregion
5033811RH14020721013372005833720268Ratregion
5025916RH13019215314043744640437599Ratregion
5051887RH9471513312970864529708778Ratregion
5055101RH14360610014796585047965950Ratregion
5055163RH14364210014219912442199224Ratregion
5051304RH13455619012080237620802566Ratregion
5053523RH14269819712536160825361805Ratregion
5053573RH14272710612861559828615704Ratregion
5053603RH14274427212910326729103539Ratregion
5053635RH14276228614768630247686588Ratregion
5056191RH14423618412925532829255512Ratregion
5056403RH14435817112944374829443919Ratregion
5056413RH14436420711679337816793585Ratregion
5056425RH14437126012280339622803656Ratregion
5051701RH9460816614764387647644042Ratregion
5051885RH9471420012912578329125983Ratregion
5052105RH9484212714323255343232680Ratregion
5057304D1Bda120214836889748369099Ratregion
5057304D1Bda120214836889748369099Ratregion
5059526AW52469919312626307826263271Ratregion
5059534BE09722020814896157448961782Ratregion
5057664BE10127617513003459330034768Ratregion
5058002BF38643620914789194047892149Ratregion
5058538AI5557459112080227420802365Ratregion
5055867RH14404817114222250942222680Ratregion
5052460AU04042412012379748523797605Ratregion
5052492U1938010414323255143232655Ratregion
5052531AI42646624013129986831300108Ratregion
5058910BF38721816614606612046066286Ratregion
5059732BI29183921611850732718507543Ratregion
5053019RH14240717014323313143233301Ratregion
5053099RH14245319514118610541186300Ratregion
5059910BF40010317214381165743811829Ratregion
5058484BI29043721112082262220822833Ratregion
5059192BF38762115712338643023386587Ratregion
5050214RH13392719614118603841186234Ratregion
5053721RH14281212914797296247973091Ratregion
5050866RH13430318412048817720488361Ratregion
5050994RH13437618014180106041801240Ratregion
5050410RH13404018312009977920099962Ratregion
5054317RH14315514411589089215891036Ratregion
5054419RH14321313914717079247170931Ratregion
5050634RH13417018612076870520768891Ratregion
5051733RH9462617514806639348066568Ratregion
5054723RH14338810912151649521516604Ratregion
5051036RH13440018612896119428961380Ratregion
5051042RH13440418312996591629966099Ratregion
5041762RH12904418014688235046882530Ratregion
5044212RH13047419414763955747639751Ratregion
5040784RH12848119114063255640632747Ratregion
5040932RH12856618414836893048369114Ratregion
5043372RH12998819412049044820490642Ratregion
5044264RH13050315414202864242028796Ratregion
5041248RH12874818012404721524047395Ratregion
5043784RH13022518011613351116133691Ratregion
5045192RH13103721812153762621537844Ratregion
5045246RH13106821714599279445993011Ratregion
5045370RH13113921413358822333588437Ratregion
5043964RH13033219013507609935076289Ratregion
5045734RH13134819712925716529257362Ratregion
5046064RH13153720312847655728476760Ratregion
5041714RH12901618011832043618320616Ratregion
5046404RH13173320612107534121075547Ratregion
5044352RH13055321814222649642226714Ratregion
5044500RH13063821014207279842073008Ratregion
5047512RH13237019514222792142228116Ratregion
5045014RH13093321512996554329965758Ratregion
5045038RH13094719314600245546002648Ratregion
5045102RH13098521114220640642206617Ratregion
5045174RH13102618312912189829122081Ratregion
5046128RH13157418014736401647364196Ratregion
5046724RH13191820411589183315892037Ratregion
5047920RH13260520612752921827529424Ratregion
5049244RH13336918612947279429472980Ratregion
5046968RH13205820414085865640858860Ratregion
5049658RH13360718114852598748526168Ratregion
5047134RH13215320913066104630661255Ratregion
5047250RH13221920813006065830060866Ratregion
5042106RH12924319211986308019863272Ratregion
5042226RH12931215512298031722980472Ratregion
5047260RH13222520613485838034858586Ratregion
5047370RH13228821512629498426295199Ratregion
5047416RH13231521614832425848324474Ratregion
5042482RH12946020811673758916737797Ratregion
5048508RH13294320514001891940019124Ratregion
5048618RH13300718614349811943498305Ratregion
5049510RH13352219712892554028925737Ratregion
5040002RH12803318714650861646508803Ratregion
5040058RH12806520914806716348067372Ratregion
5040106RH12809318012753010727530287Ratregion
5039436RH12770518612847549228475678Ratregion
5039528RH12775720212701668427016886Ratregion
5043244RH12991520613472281534723021Ratregion
7191235Calm1011971107619711989Ratregion
5039876RH12795820114666236646662567Ratregion
5042458RH12944521512937580629376021Ratregion
5043494RH13005718913358881533589004Ratregion
5040950RH12857718111673762116737802Ratregion
5043606RH13012119214681282146813013Ratregion
5040622RH12838919312947294229473135Ratregion
5075168RH13843818414586186545862049Ratregion
5074036RH13778215912704750127047660Ratregion
5075522RH13864213413507709235077226Ratregion
5075692RH13874115613323410433234260Ratregion
5075692RH13874115613323410433234260Ratregion
5072274RH13675412014763751947637639Ratregion
5072328RH1367858613129986631299952Ratregion
5076372RH13913712312847080928470932Ratregion
5076548RH13924012412017497420175098Ratregion
5072562RH13692119314381385743814050Ratregion
5074512RH13806013112611289726113028Ratregion
5074652RH13814014812303553423035682Ratregion
5076574RH13925514412428317024283314Ratregion
5076926RH13945912514599288645993011Ratregion
5074782RH13821520012336127623361476Ratregion
5075010RH13834724812460095624601203Ratregion
5080594RH14167020514086000940860214Ratregion
5080672RH14171518314662100046621183Ratregion
5077102RH13956222012384796823848188Ratregion
5077362RH13971318714203140542031592Ratregion
5075146RH13842512714547554845475675Ratregion
5075228RH13847318514795446747954652Ratregion
5075580RH13867617512898189628982071Ratregion
5077598RH13984818113500235835002539Ratregion
5077614RH13985721614158777441587990Ratregion
5077636RH13987020414726413947264343Ratregion
5076872RH13942815814688490646885064Ratregion
5077202RH13962122012076331920763539Ratregion
5077312RH13968418312182160621821789Ratregion
5077464RH13977118912241555222415741Ratregion
5077496RH13978918711643165616431843Ratregion
5078104RH14014619314763818247638375Ratregion
5077876RH14001118014731074347310923Ratregion
5077934RH14004420412179052421790728Ratregion
5077934RH14004420412179052421790728Ratregion
5078146RH14017018012629019326290373Ratregion
5078192RH14019719914763896447639163Ratregion
5078558RH14041323614688388246884118Ratregion
5070546RH13456320412162835921628563Ratregion
5079310RH14090819214650987446510066Ratregion
5079310RH14090819214650987446510066Ratregion
5080510RH14162019114104061541040806Ratregion
5071410RH13506619414852741048527604Ratregion
5070818RH13472321814349957043499788Ratregion
5072910RH13712518213497915334979335Ratregion
5074044RH13778718412861620928616393Ratregion
5074138RH13784320414599221945992423Ratregion
5072030RH13542419214031242240312611Ratregion
5074278RH13792423714799677347997010Ratregion
5074468RH13803421111791035917910570Ratregion
5074486RH13804523012587659025876820Ratregion
5071292RH13499819714385553343855730Ratregion
5073492RH13746718411588269915882883Ratregion
5073624RH13754414014090164640901786Ratregion
5072346RH13679617512629042626290601Ratregion
5074608RH13811516214592459845924760Ratregion
5074802RH13822623814661807246618310Ratregion
5071594RH13517221814793092147931139Ratregion
5071878RH13533718914868925148689440Ratregion
5061760AW53324218314598811945988302Ratregion
5061774AW53335519012869754828697738Ratregion
5066630AU04824317512678897826789153Ratregion
5066748AU04817411913110933631109386Ratregion
5066942AU04805917112640398026404153Ratregion
5067176AU04791413513090917530909310Ratregion
5067236AU04787828313090905230909335Ratregion
5067366AU04779815613090917330909329Ratregion
5067632AU04762820013736385337364077Ratregion
5067780AU04754020914137767941377888Ratregion
5067782AU04753919114082048840820681Ratregion
5067856AU04749516313815771038157769Ratregion
5067900AU04746928112296707722967358Ratregion
5068014AU04740223312627075726270990Ratregion
5068162AU04731123113039481330395044Ratregion
5068228AU04727216414010558540105749Ratregion
5068386AU04717815011985755919857711Ratregion
5068648AU04701825914398777543988034Ratregion
5069983RH9440017312970803729708210Ratregion
5070179RH945188414782906147829145Ratregion
5069606AU04638618412117504921175233Ratregion
5069634AU04637029014065621440656504Ratregion
5070237RH9455110014791102747911127Ratregion
5069062AU0467489913092773930927838Ratregion
5069100AU04672423814566476745665005Ratregion
5069774AU02883120014791688847917088Ratregion
5069776AU0288129911716668417166783Ratregion
5069264AU04661222213061646830616690Ratregion
5060282AW53110015914590258745902746Ratregion
5060288AW53112917611584260415842780Ratregion
5061972BF39701815811938125319381411Ratregion
5063610BF40440119712628187326282070Ratregion
5065246BE12127920411587901315879217Ratregion
5060520BE11027215414763386547634019Ratregion
5065522BE11578516814676417646764344Ratregion
5060890BF40125717512301713623017311Ratregion
5062704BF40391012012120440321204523Ratregion
5064280BE12097821014904440049044610Ratregion
5065396BE11532716014357466443574824Ratregion
5060598BE11055415813067368930673847Ratregion
5065552BF41242012012619209926192219Ratregion
5065768BF4129619614610275146102847Ratregion
5065774BF40640810812474485524744963Ratregion
5060780BF38912815612846498728465143Ratregion
5061276BE11143718312832017828320361Ratregion
5063074BF41028219111899173118991922Ratregion
5063100BF39838021611939844519398661Ratregion
5063146BI30135719212225053922250731Ratregion
5064682BF39955723912836834328368582Ratregion
5066298PMC140821P116911610473916104908Ratregion
5061368BE11169517714717075647170933Ratregion
5064894BE10869016814395844143958609Ratregion
5066576AU04827519613780311337803303Ratregion
5084210AA8494139412406840324068497Ratregion
5086899AI22834616814868873548688903Ratregion
5087398EST-CFZ9775635211771811217718464Ratregion
5087540PMC304098P210112972440229724503Ratregion
5088048Plg24314832521048325453Ratregion
5088919AU04884822712124385421244081Ratregion
5089081AU04894313212944930029449432Ratregion
5089105AU04895715212076108520761237Ratregion
5089897AU04942821713991628239916499Ratregion
5083145BF39087216011610502816105188Ratregion
5088207AU04843114114353065343530794Ratregion
5090765AU04995026413401460034014863Ratregion
5090845AU04999818114614928246149463Ratregion
5083679BF41807710014843085348430953Ratregion
5088595AU04866316413332447033324634Ratregion
5084648AI41061319814598755745987755Ratregion
5081865BE11858018414797296647973150Ratregion
5082015BF41564316914858474848584917Ratregion
5082301BE11914215312848067228480825Ratregion
5085094BQ20957716811600277216002940Ratregion
5085407BE10071717512847689928477074Ratregion
5088241AU04845117614792181347921989Ratregion
5088271AU04846818813977878339778971Ratregion
5088289AU0484819712701003827010135Ratregion
5088477AU04859318412023483820235024Ratregion
5088565AU04864512012603208626032206Ratregion
5085183AA79957014812732349627323644Ratregion
5088805AU04878326912298230822982576Ratregion
5088829AU04879529513102487231025167Ratregion
5081274RH14206618014852385148524031Ratregion
5090033AU04951028711787099917871286Ratregion
5090051AU04952116214830374548303907Ratregion
5090205AU04961314112681359426813735Ratregion
5088939AU04885914813810618338106354Ratregion
5088939AU04885914813821324138213410Ratregion
5089023AU04890919511567294415673139Ratregion
5080896RH14184519214380596343806155Ratregion
5084672AI17122314314888926548889408Ratregion
5082795BF39012216514323796643238131Ratregion
5086394AW52982919814730269847302896Ratregion
5084772AI17200614312395586223956005Ratregion
5085541BE09773021814837218548372403Ratregion
5083601BI28296021114726395047264160Ratregion
5083701BF41819922314793055447930777Ratregion
5081695BF41474417414791101147911185Ratregion
5081907BE11873216014409768744097847Ratregion
5503254UniSTS:23756624414727493447275178Ratregion
5503762UniSTS:47054048814343543943435926Ratregion
5504532PMC27918P136412965735329657717Ratregion
5504290D5S1607E10213469306634694119Ratregion
5505140Irx28113066257530663265Ratregion
5505089Taar481312148110421481917Ratregion
5505087Taar182612151780821518634Ratregion
5505091Taar990112127503021275931Ratregion
5505093Taar580712147005421470861Ratregion
5505095Taar278512150047221501257Ratregion
5505097Taar389012149165521492545Ratregion
5505255Gpsn220614726378747263993Ratregion
5506066UniSTS:49827336214832521348325575Ratregion
5506147Irx36513066439730664462Ratregion
5506300DXS984982611971396219714788Ratregion
5506737G4497112413326155633261680Ratregion
5506973fc42c01.y159912821631328216912Ratregion
5507009fj17g12.x1012811276628113629Ratregion
5507133UniSTS:22476416011595900715959167Ratregion
5499607MARC_2026-2027:991932441:135311910750919107862Ratregion
5500013UniSTS:23613726412732357627323841Ratregion
5500037UniSTS:23631932512324212223242447Ratregion
5502275RH12424210412363871923638823Ratregion
5502803POLS108713378763433788721Ratregion
5502845Ap2b133413429260534292939Ratregion
5502845Ap2b133413429260534292939Ratregion
5500707RH7132217113472282534722996Ratregion
5501123PMC140821P213211616881016168942Ratregion
5501139PMC148819P723214847597448476206Ratregion
5504163UniSTS:25940757613429268234293258Ratregion
5502112MARC_4677-4678:996679594:17313472260734722680Ratregion
5502533RH12520521014697086546971872Ratregion
Position Markers

Flank 1: (D1Rat7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2115,431,621 - 15,431,794 (+)MAPPER
Rnor_6.0116,143,143 - 16,143,315NCBI
Rnor_5.0117,683,508 - 17,683,680UniSTS
RGSC_v3.4115,999,377 - 15,999,782RGD
RGSC_v3.4115,999,443 - 15,999,615UniSTS
RGSC_v3.1115,999,505 - 15,999,677RGD
Celera113,858,431 - 13,858,603UniSTS
RH 3.4 Map1166.13UniSTS
RH 3.4 Map1166.13RGD
RH 2.0 Map185.1RGD
SHRSP x BN Map112.5699RGD
FHH x ACI Map113.3899RGD
Cytogenetic Map1 RGD
Peak: (D1Mgh2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,340,647 - 22,340,797 (+)MAPPER
Rnor_6.0123,406,428 - 23,406,577NCBI
Rnor_5.0124,875,821 - 24,875,970UniSTS
RGSC_v3.4122,842,898 - 22,843,363RGD
RGSC_v3.4122,842,962 - 22,843,111UniSTS
RGSC_v3.1122,845,906 - 22,846,056RGD
Celera121,070,514 - 21,070,663UniSTS
RH 3.4 Map1220.6UniSTS
RH 3.4 Map1220.6RGD
RH 2.0 Map1147.3RGD
SHRSP x BN Map115.98RGD
FHH x ACI Map119.52RGD
Cytogenetic Map1p12UniSTS
Flank 2: (D1Mit9)
Rat AssemblyChrPosition (strand)Source
GRCr8151,909,206 - 51,909,353 (+)Marker Load Pipeline
mRatBN7.2149,361,465 - 49,361,612 (+)MAPPER
Rnor_6.0149,547,328 - 49,547,474NCBI
Rnor_5.0150,204,369 - 50,204,515UniSTS
RGSC_v3.4143,840,482 - 43,840,628UniSTS
RGSC_v3.4143,840,481 - 43,840,628RGD
RGSC_v3.1143,843,426 - 43,843,573RGD
Celera145,146,244 - 45,146,390UniSTS
RH 3.4 Map1575.1UniSTS
RH 3.4 Map1575.1RGD
RH 2.0 Map1291.4RGD
SHRSP x BN Map123.8RGD
Cytogenetic Map1q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)11532110019121980Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
731169Bp153Blood pressure QTL 1530.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13105084033492143Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2316649Bp344Blood pressure QTL 344arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13224973533038814Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 19 parental GK, 20 parental F344, 37 F1 and 206 F2 rats 5684953
qtl_general lineage: F1 animals from both the reciprocal crosses were used; 2 seperate F2 intercrosses were generated, one from grandmaternal GK and grandpaternal F344, the other from grandmaternal F344 and grandpaternal GK 5684953
qtl_general measurement method: at 215 days (mean age) rats kept under controlled conditions were sacrificed and left tibia subjected to three point bending test using Instron 4465 materials testing machine (Instron Inc., Canton, MA, USA) 5684953
qtl_general software used: properties of the bone were calculated from load displacement curves and collected using LABView data acquisition software 5684953
qtl_general this region (18-43 cM) is determined in grandmaternal F344/grandpaternal GK and grandmaternal GK/grandpaternal F344 F2 female rats 5684953