Leukc1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Leukc1 (Leukocyte quantity QTL 1) Rattus norvegicus

Symbol: Leukc1
Name: Leukocyte quantity QTL 1
RGD ID: 5135224
Previously known as: eosinophilia 1; eos1
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: LRS: 16.4
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21944,340,214 - 55,283,277RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01948,830,712 - 60,220,581RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01959,631,471 - 70,892,142RGDRnor5.0
RGSC_v3.41912,235,101 - 57,235,101RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: ACI/NSlc MES/Slc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Irf8 is a candidate Gene for Leukc1
Zfpm1 is a candidate Gene for Leukc1

Disease Annotations     Click to see Annotation Detail View
Eosinophilia  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/NSlc  (IEA)
MES/Slc  (IEA)

References

References - curated
# Reference Title Reference Citation
1. A locus for eosinophilia in the MES rat is on Chromosome 19. Li G, etal., Mamm Genome. 2005 Jul;16(7):516-23.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
11373677LOC10834894440S ribosomal protein S14 pseudogene194441240344412906Rat
41374924LOC120098592uncharacterized LOC120098592194441346444419495Rat
1306930Dynlrb2dynein light chain roadblock-type 2194452013444531384Rat
1309548Cdyl2chromodomain Y-like 2194459173444783258Rat
7597227LOC102547670uncharacterized LOC102547670194483999644849826Rat
2324599Cmc2C-x(9)-C motif containing 2194494328344997408Rat
1310953Cenpncentromere protein N194497126544994019Rat
1305781AtminATM interactor194499650645013606Rat
1586501C19h16orf46similar to human chromosome 16 open reading frame 46194501749945033453Rat
619946Gcshglycine cleavage system protein H194503601345046770Rat
1588631Pkd1l2polycystin 1 like 2194504971345136503Rat
70981Bco1beta-carotene oxygenase 1194514925045186102Rat
7598317Rps24-ps1ribosomal protein S24, pseudogene 1194517770445178302Rat
1307766Gangigaxonin194520786445258831Rat
41179725NEWGENE_40938314transfer RNA serine (anticodon AGA)194528018545280278Rat
1306101Cmipc-Maf-inducing protein194530459745510653Rat
41383128LOC120098619U6 snRNA-associated Sm-like protein LSm7194530542245320865Rat
41292501Atp5mf-ps1ATP synthase membrane subunit f, pseudogene 1194537335545392161Rat
7688675LOC102548350uncharacterized LOC102548350194541211745413732Rat
41291636LOC120098622uncharacterized LOC120098622194541328445419789Rat
3348Plcg2phospholipase C, gamma 2194554741645683930Rat
1308481Sdr42e1short chain dehydrogenase/reductase family 42E, member 1194571536645727901Rat
41034518LOC120098492uncharacterized LOC120098492194572459145737212Rat
621803Hsd17b2hydroxysteroid (17-beta) dehydrogenase 2194575357645825203Rat
1591222Mphosph6M phase phosphoprotein 6194586015245870077Rat
41123051LOC120098532uncharacterized LOC120098532194606484646094793Rat
41357379LOC120098686small nucleolar RNA SNORA51194618435146184483Rat
619745Cdh13cadherin 13194634956247387462Rat
41187403LOC120098661uncharacterized LOC120098661194661121146624842Rat
40992884LOC120098660uncharacterized LOC120098660194668613646689104Rat
41209110LOC120098662uncharacterized LOC120098662194671702146724445Rat
41017738LOC120098700small nucleolar RNA SNORA17194679557746795708Rat
628632Hsbp1heat shock factor binding protein 1194740103947405373Rat
620234Mlycdmalonyl-CoA decarboxylase194744793147463794Rat
41000024LOC120098609uncharacterized LOC120098609194746816747469434Rat
620679Osgin1oxidative stress induced growth inhibitor 1194747175047500517Rat
621844Necab2N-terminal EF-hand calcium binding protein 2194750135147527722Rat
1560237Slc38a8solute carrier family 38, member 8194752278147561443Rat
70935Mbtps1membrane-bound transcription factor peptidase, site 1194756159847612769Rat
1308433Hsdl1hydroxysteroid dehydrogenase like 1194761579447631892Rat
1310542Dnaaf1dynein, axonemal, assembly factor 1194762453447652314Rat
7599081Ndufa2-ps3NADH:ubiquinone oxidoreductase subunit A2, pseudogene 3194764138147642187Rat
1305658Taf1cTATA-box binding protein associated factor, RNA polymerase 1 subunit C194765245147658971Rat
1586236Adad2adenosine deaminase domain containing 2194766528847669433Rat
1308553Kcng4potassium voltage-gated channel modifier subfamily G member 4194767730747689410Rat
68938Wfdc1WAP four-disulfide core domain 1194772019147739121Rat
41175675NEWGENE_40934091transfer RNA alanine (anticodon AGC)194775102647751098Rat
620647Atp2c2ATPase secretory pathway Ca2+ transporting 2194775412047811369Rat
7727982LOC102549202uncharacterized LOC102549202194777280147778184Rat
1308461Meak7MTOR associated protein, eak-7 homolog194781389947836830Rat
1305498Cotl1coactosin-like F-actin binding protein 1194787168947906010Rat
41343333LOC120098610uncharacterized LOC120098610194790608047909029Rat
9363365LOC10369434740S ribosomal protein S25 pseudogene194791995847920912Rat
1561366Klhl36kelch-like family member 36194792159047942627Rat
1561965Usp10ubiquitin specific peptidase 10194797285848014900Rat
620860Crispld2cysteine-rich secretory protein LCCL domain containing 2194805315348111485Rat
620205Zdhhc7zinc finger DHHC-type palmitoyltransferase 7194813930948156673Rat
1304884RGD1304884similar to RIKEN cDNA 6430548M08194816865148216571Rat
1560673Cibar2CBY1 interacting BAR domain containing 2194821761748229418Rat
7729006LOC102551361uncharacterized LOC102551361194825990348273928Rat
1562686Gse1Gse1 coiled-coil protein194827416448629456Rat
40945642LOC120098637uncharacterized LOC120098637194837394348380732Rat
7599182LOC102551937uncharacterized LOC102551937194839030148399861Rat
40985115LOC120098636uncharacterized LOC120098636194842027448429769Rat
1311055Gins2GINS complex subunit 2194862677048639523Rat
41005633LOC1200987245S ribosomal RNA194864268648642804Rat
41345052LOC120098638uncharacterized LOC120098638194864962348658362Rat
1309651RGD1309651similar to 1190005I06Rik protein194866028848686569Rat
1311219Emc8ER membrane protein complex subunit 8194870830448721626Rat
68374Cox4i1cytochrome c oxidase subunit 4i1194872168048727920Rat
7599156LOC102552167uncharacterized LOC102552167194874654548752520Rat
41189202LOC120098524uncharacterized LOC120098524194875422348779657Rat
1312024Irf8interferon regulatory factor 8194879048348812363Rat
41137063LOC120098548uncharacterized LOC120098548194901819549020314Rat
40991085LOC120098547uncharacterized LOC120098547194902047849027118Rat
41300839LOC120098591uncharacterized LOC120098591194903216349036595Rat
9685086FendrrFOXF1 adjacent non-coding developmental regulatory RNA194912722549152779Rat
1584229Foxf1forkhead box F1194915372949157741Rat
1584226Mthfsdmethenyltetrahydrofolate synthetase domain containing194916426649178233Rat
621703Foxc2forkhead box C2194918603449188736Rat
1584212Foxl1forkhead box L1194919625549200682Rat
9204125LOC103694348uncharacterized LOC103694348194931791349323512Rat
41244786LOC120098555uncharacterized LOC120098555194933596649342209Rat
41104378LOC120098552uncharacterized LOC120098552194939241449395149Rat
1587275Nhp2-ps6NHP2 ribonucleoprotein, pseudogene 6194940748849407930Rat
41302779LOC120098608uncharacterized LOC120098608194948884549497782Rat
41142692LOC120098556uncharacterized LOC120098556194949868649500592Rat
11473545LOC108348955uncharacterized LOC108348955194950547849520886Rat
41278188LOC120098576uncharacterized LOC120098576194952168349541434Rat
1584205LOC687560hypothetical protein LOC687560194960581849619235Rat
41215469LOC120098534uncharacterized LOC120098534194961843849622601Rat
41048660LOC120098740U4 spliceosomal RNA194962387749623959Rat
1561069Fbxo31F-box protein 31194962481849656083Rat
11447020Trnam-cau13transfer RNA methionine (anticodon CAU) 13194965650449656576Rat
621315Map1lc3bmicrotubule-associated protein 1 light chain 3 beta194966579549673655Rat
1309494Zcchc14zinc finger CCHC-type containing 14194967418549718004Rat
7526201LOC102550418uncharacterized LOC102550418194976384449778086Rat
41376102LOC120098674small nucleolar RNA SNORA72194976913849769240Rat
1308416Jph3junctophilin 3194979396749855338Rat
1561676Klhdc4kelch domain containing 4194986097549894027Rat
4888596Mir3564microRNA 3564194987360349873714Rat
620639Slc7a5solute carrier family 7 member 5194993522049963823Rat
7581426LOC102550600uncharacterized LOC102550600194996386549972967Rat
2243Car5acarbonic anhydrase 5A194997309250002948Rat
1307464BanpBtg3 associated nuclear protein195000771050082742Rat
1583874Zfp469zinc finger protein 469195028243450324010Rat
1582810Zfpm1zinc finger protein, multitype 1195033435250391029Rat
40994374LOC120098606uncharacterized LOC120098606195036111950366739Rat
41400957LOC120098567uncharacterized LOC120098567195040871650410943Rat
621262Mlnrmotilin receptor195041357050422842Rat
1303257Zc3h18zinc finger CCCH-type containing 18195043486450479855Rat
1582798Il17cinterleukin 17C195048489050486169Rat
620573Cybacytochrome b-245 alpha chain195048759850495669Rat
621292Mvdmevalonate diphosphate decarboxylase195049636650506389Rat
1309658Snai3snail family transcriptional repressor 3195051677150529295Rat
1302950Rnf166ring finger protein 166195052943450539274Rat
1562594Ctu2cytosolic thiouridylase subunit 2195053918450544629Rat
1308822Piezo1piezo-type mechanosensitive ion channel component 1195054458050606812Rat
41385951LOC120093050uncharacterized LOC120093050195058127650606141Rat
9392387LOC103694354uncharacterized LOC103694354195061644350620704Rat
1309211Cdt1chromatin licensing and DNA replication factor 1195062071350625659Rat
1307758Aprtadenine phosphoribosyl transferase195062643650628404Rat
1565391Galnsgalactosamine (N-acetyl)-6-sulfatase195062863950662477Rat
1304906Trappc2ltrafficking protein particle complex subunit 2L195066250750666193Rat
1562761Pabpn1lPABPN1 like195066996550673409Rat
1310547Cbfa2t3CBFA2/RUNX1 partner transcriptional co-repressor 3195067989750750028Rat
41047660LOC120098526uncharacterized LOC120098526195077749550779312Rat
41351853LOC120098525uncharacterized LOC120098525195077770050781579Rat
40945936LOC120098493uncharacterized LOC120098493195078283150806340Rat
6502735LOC100909629uncharacterized LOC100909629195080663950817007Rat
41118193LOC120098494uncharacterized LOC120098494195081683050821350Rat
1586037Acsf3acyl-CoA synthetase family member 3195083511650875557Rat
11378322LOC108348960uncharacterized LOC108348960195085367750862848Rat
41050620LOC120098675small nucleolar RNA SNORA72195085932550859453Rat
1303000Cdh15cadherin 15195090375750927151Rat
1306679Ankrd11ankyrin repeat domain containing 11195094028451098962Rat
41014821LOC120098732small nucleolar RNA U3195111136951111592Rat
11440615Rps13-ps1ribosomal protein S13, pseudogene 1195111186351112717Rat
7650106LOC102551789uncharacterized LOC102551789195111449551116989Rat
727940Spg7SPG7 matrix AAA peptidase subunit, paraplegin195111704551151228Rat
621179Rpl13ribosomal protein L13195115399051156541Rat
40940624LOC120098677small nucleolar RNA MBII-202195115462651154708Rat
1307466Cpne7copine 7195116431651182677Rat
41305979LOC120098588uncharacterized LOC120098588195116944151170978Rat
41368791LOC120098587uncharacterized LOC120098587195117417951186502Rat
1310002Sult5a1sulfotransferase family 5A, member 1195118928751204275Rat
620324Dpep1dipeptidase 1195120983151237004Rat
40968069LOC120098589uncharacterized LOC120098589195121389651215018Rat
1311083Chmp1acharged multivesicular body protein 1A195123815351246433Rat
1561507Spata33spermatogenesis associated 33195124651451258894Rat
1304851Cdk10cyclin-dependent kinase 10195126001251273009Rat
1560840Spata2Lspermatogenesis associated 2-like195126907851273605Rat
1565149Vps9d1VPS9 domain containing 1195127699851290642Rat
1307469Zfp276zinc finger protein (C2H2 type) 276195129100551304240Rat
1311380FancaFA complementation group A195130402151362586Rat
41305797LOC120098676small nucleolar RNA SNORD43195131686151316921Rat
1305837Spire2spire-type actin nucleation factor 2195137336851411920Rat
1309054Tcf25transcription factor 25195141534151449725Rat
1312046Mc1rmelanocortin 1 receptor195145244851455375Rat
628595Tubb3tubulin, beta 3 class III195145718751466243Rat
1309008Def8differentially expressed in FDCP 8 homolog195147478351495638Rat
41276582LOC120098741U5 spliceosomal RNA195147932051479442Rat
1309722Afg3l1AFG3 (ATPase family gene 3)-like 1195150861251535773Rat
1310008Dbndd1dysbindin domain containing 1195153915451548441Rat
1307817Gas8growth arrest specific 8195155277051572323Rat
41242229LOC1200987235S ribosomal RNA195157420351574321Rat
41333231LOC1200986665S ribosomal RNA195157597951576097Rat
41162948LOC1200987175S ribosomal RNA195157774151577859Rat
41019155LOC1200987255S ribosomal RNA195157950151579619Rat
40984105LOC1200987365S ribosomal RNA195158126351581381Rat
41366977LOC1200987485S ribosomal RNA195158302051583138Rat
41264674LOC1200986725S ribosomal RNA195158477351584891Rat
41079711LOC1200986835S ribosomal RNA195158719351587311Rat
40986293LOC1200986935S ribosomal RNA195158894751589065Rat
41274061LOC1200987045S ribosomal RNA195159070751590825Rat
41190846LOC1200987115S ribosomal RNA195159246751592585Rat
41226032LOC1200987125S ribosomal RNA195159423151594349Rat
41389241LOC1200987135S ribosomal RNA195159599151596109Rat
41195681LOC1200987145S ribosomal RNA195159775351597871Rat
41367669LOC1200987155S ribosomal RNA195159951351599631Rat
41016926LOC1200987165S ribosomal RNA195160127351601391Rat
41093667LOC1200987185S ribosomal RNA195160303751603155Rat
41011831LOC1200987195S ribosomal RNA195160479551604913Rat
41350867LOC1200987205S ribosomal RNA195160655551606673Rat
41359396LOC1200987215S ribosomal RNA195160831151608429Rat
41022570LOC1200987225S ribosomal RNA195161007551610193Rat
1596918Rhouras homolog family member U195164140851651249Rat
7670659LOC102546393uncharacterized LOC102546393195166145051671801Rat
7535996LOC102546589uncharacterized LOC102546589195169795751709179Rat
11362865LOC108348963uncharacterized LOC108348963195174090651759396Rat
3529Rab4aRAB4A, member RAS oncogene family195179561351822706Rat
1563235Ccsapcentriole, cilia and spindle-associated protein195182495451843469Rat
11416554LOC108348965uncharacterized LOC108348965195184913851859631Rat
2025Acta1actin, alpha 1, skeletal muscle195188371351886725Rat
1307827Nup133nucleoporin 133195189160651941243Rat
41372170LOC120098745U6 spliceosomal RNA195189813751898243Rat
1311222Abcb10ATP binding cassette subfamily B member 10195195265551982910Rat
41060236LOC120098684small nucleolar RNA SNORA2/SNORA34 family195196412351964259Rat
1310215Taf5lTATA-box binding protein associated factor 5 like195199170452011001Rat
1307980Urb2URB2 ribosome biogenesis homolog195201101952036607Rat
40977524Eif4e-ps8eukaryotic translation initiation factor 4E, pseudogene 8195203974552044162Rat
1563459Rpl26-ps8ribosomal protein L26, pseudogene 8195205520452055870Rat
735056Cox6c-ps1cytochrome c oxidase subunit VIc, pseudogene195219261252193470Rat
1310692Galnt2polypeptide N-acetylgalactosaminyltransferase 2195221322652324816Rat
1310825Pgbd5piggyBac transposable element derived 5195233675152401906Rat
11455539LOC108348970uncharacterized LOC108348970195240782652416683Rat
1589822Cog2component of oligomeric golgi complex 2195249390152532667Rat
2069Agtangiotensinogen195252913952549618Rat
70965Capn9calpain 9195254944852586413Rat
1559896C19h1orf198similar to human chromosome 1 open reading frame 198195260406052629436Rat
41357037LOC120098646uncharacterized LOC120098646195262944652631588Rat
1310186Ttc13tetratricopeptide repeat domain 13195263743152692196Rat
1310264Arv1ARV1 homolog, fatty acid homeostasis modulator195269233752704156Rat
41280196LOC120098615uncharacterized LOC120098615195270526852707891Rat
1309879Fam89afamily with sequence similarity 89, member A195271000352722591Rat
7603772LOC102549725uncharacterized LOC102549725195274944052751686Rat
41338799NEWGENE_40934091transfer RNA alanine (anticodon AGC)195276191052761990Rat
1560667Trim67tripartite motif-containing 67195276399152805906Rat
1562218C19h1orf131similar to human chromosome 1 open reading frame 131195280793252822259Rat
620179Gnpatglyceronephosphate O-acyltransferase195282232652848872Rat
620245Exoc8exocyst complex component 8195285501052857499Rat
1559496SprtnSprT-like N-terminal domain195285759952864864Rat
631375Egln1egl-9 family hypoxia-inducible factor 1195286791452907169Rat
2318551Ssbp1-ps3single stranded DNA binding protein 1, pseudogene 3195291542552922800Rat
7536826LOC102549918uncharacterized LOC102549918195294402852960028Rat
621574Tsnaxtranslin-associated factor X195297584852989886Rat
41007828Rpl27-ps7ribosomal protein L27, pseudogene 7195297947952979898Rat
40964221Rps25-ps3ribosomal protein S25, pseudogene 3195300408853007369Rat
631359Disc1DISC1 scaffold protein195301420153223617Rat
9330218LOC103694360spore coat protein SP65-like195316124653166915Rat
41307791LOC120098564uncharacterized LOC120098564195321695653242202Rat
7580695LOC102557452uncharacterized LOC102557452195330649853313376Rat
1306269Sipa1l2signal-induced proliferation-associated 1 like 2195338979253540466Rat
1307467SetsipSET like protein195356126253562780Rat
41214410LOC120098601uncharacterized LOC120098601195360354853611109Rat
1308644Map10microtubule-associated protein 10195364215653644948Rat
1306192Ntpcrnucleoside-triphosphatase, cancer-related195370149653715260Rat
1305883Pcnx2pecanex 2195371892053869559Rat
11387689LOC108353197involucrin-like195378336553789204Rat
41030524LOC120098635uncharacterized LOC120098635195379140753794413Rat
41399234LOC120098634uncharacterized LOC120098634195381086453817660Rat
1306091Map3k21mitogen-activated protein kinase kinase kinase 21195388003253913560Rat
621447Kcnk1potassium two pore domain channel subfamily K member 1195395941153997726Rat
1589548Slc35f3solute carrier family 35, member F3195410281154371765Rat
7559315Coa6cytochrome c oxidase assembly factor 6195439568254398918Rat
1589526Tarbp1TAR (HIV-1) RNA binding protein 1195439826854449293Rat
1589517Irf2bp2interferon regulatory factor 2 binding protein 2195455940954564714Rat
11368559LOC108348977uncharacterized LOC108348977195462276654631873Rat
41364153LOC120098522uncharacterized LOC120098522195463227154637174Rat
7671054LOC102547567uncharacterized LOC102547567195471022154716821Rat
7712946LOC102547513uncharacterized LOC102547513195471901054728813Rat
7578198LOC102547637uncharacterized LOC102547637195472854054729928Rat
41337730LOC120098520uncharacterized LOC120098520195475330654763471Rat
41091886LOC120098517uncharacterized LOC120098517195480296854815643Rat
7602217LOC102547807uncharacterized LOC102547807195481731254828236Rat
41158916LOC120098540uncharacterized LOC120098540195483040954831873Rat
708467Tomm20translocase of outer mitochondrial membrane 20195492519754935188Rat
41285650LOC120098679small nucleolar RNA SNORA14195493422554934358Rat
1310161Rbm34RNA binding motif protein 34195493651654956810Rat
6489015Haus2-ps1HAUS augmin like complex subunit 2, pseudogene 1195497494854976180Rat
1586125Rpl10a-ps7ribosomal protein L10A, pseudogene 7195500448655007132Rat
1587112Hmgb1l1high mobility group box 1-like 1195504588555047145Rat
41293225LOC120098596gamma-aminobutyric acid receptor-associated protein-like 2195505275655053109Rat
620374Pard3par-3 family cell polarity regulator195508028255630111Rat
41344297LOC120098545uncharacterized LOC120098545195520777155209429Rat
41065529Rpl28-ps7ribosomal protein L28, pseudogene 7195526181655262266Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33735D19Mit11202194737736947377562Ratregion
36972D19Rat21129194997648149976619Ratregion
37006D19Rat6154194771839747718547Ratregion
37050D3Rat22361194748364347483996Ratregion
36709D19Rat8172194434021444340377Ratregion
35028D19Rat2151195322561553225766Ratregion
35807D19Rat7153194538131745381467Ratregion
35973D19Rat3164195259827852598438Ratregion
39632D19Rat100228195516731955167549Ratregion
39944D19Rat58126195193334251933460Ratregion
38034D19Rat38229194620135346201584Ratregion
39430D19Rat62112194602467646024792Ratregion
39516D19Rat60205195321745853217652Ratregion
41262D19Rat57131195528314655283277Ratregion
40858D19Rat63214194621745246217657Ratregion
40962D19Rat61147194610288446103025Ratregion
43134D19Rat107147194642216846422293Ratregion
43135D19Rat106105195324772953247848Ratregion
43136D19Rat105212195137283351373046Ratregion
43137D19Rat103149195157712351577272Ratregion
43137D19Rat103149195158064351580794Ratregion
43137D19Rat103149195158240051582551Ratregion
43137D19Rat103149195158591551586064Ratregion
43137D19Rat103149195159008951590238Ratregion
43137D19Rat103149195159184951591998Ratregion
43137D19Rat103149195159537351595522Ratregion
43137D19Rat103149195159713351597284Ratregion
43137D19Rat103149195159889551599044Ratregion
43137D19Rat103149195160065551600804Ratregion
43137D19Rat103149195160241751602568Ratregion
43137D19Rat103149195160593751606086Ratregion
43137D19Rat103149195160769151607842Ratregion
45648D19Got49227194441881144419029Ratregion
45650D19Got52143194470007444700217Ratregion
45652D19Got48243194509906945099312Ratregion
45653D19Got51251194515635745156608Ratregion
45657D19Got53202194686339246863594Ratregion
45658D19Got55276194847462448474899Ratregion
45660D19Got54210194876351348763723Ratregion
60190D19Got62221194776603147766291Ratregion
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Position Markers

Flank 1: (D19Rat8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21944,340,214 - 44,340,377 (+)MAPPER
Rnor_6.01948,830,712 - 48,830,874NCBI
Rnor_5.01959,631,471 - 59,631,633UniSTS
Celera1943,635,359 - 43,635,521UniSTS
RH 3.4 Map19595.8RGD
RH 3.4 Map19595.8UniSTS
RH 2.0 Map19617.5RGD
SHRSP x BN Map1938.1498RGD
FHH x ACI Map1940.38RGD
Flank 2: (D19Rat57)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21955,283,146 - 55,283,277 (+)MAPPER
Rnor_6.01960,220,451 - 60,220,581NCBI
Rnor_5.01970,892,012 - 70,892,142UniSTS
RGSC_v3.41957,234,802 - 57,235,101RGD
RGSC_v3.41957,234,859 - 57,234,989UniSTS
RGSC_v3.11957,239,862 - 57,240,161RGD
Celera1954,621,043 - 54,621,173UniSTS
SHRSP x BN Map1942.5498RGD
SHRSP x BN Map1942.5498UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cand_genes 1312024 5135221
qtl_cross_pair backcross 5135221
qtl_general explains 19% of the total variance with an additive effect of 162.7 by the MES allele 5135221
qtl_general explains 19% of the total variance with an additive effect of 162.7 by the MES allele 5135221
qtl_general number of animals used: 328 backcross rats 5135221
qtl_general measurement method: blood samples were collected from the jugular vein of 12 weeks old rats anesthetized with ether; number of leukocytes was counted by an automated cell counter and differential leukocyte counts (%) were determined on blood film stained with Wright's stain 5135221
qtl_general lineage: 7 eosinophilic male rats from F9 and F10 generation were backcrossed to MES/Slc 5135221
qtl_general software used: Map Manager QTXb20 5135221
qtl_statistics LRS: 16.4 5135221