Eae29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Eae29 (Experimental allergic encephalomyelitis QTL 29) Rattus norvegicus

Symbol: Eae29
Name: Experimental allergic encephalomyelitis QTL 29
RGD ID: 4889451
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis severity score   (CMO:0001419)    
LOD Score: 5.51
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.215,925,877 - 24,697,545RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.015,655,772 - 85,706,974RGD_MAPPER_PIPELINERnor6.0
Rnor_5.017,306,802 - 86,917,075RGDRnor5.0
RGSC_v3.416,253,932 - 25,271,177RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: DA.PVG.1AV1-(D1Rat248-D1Rat10)/Kini 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Il22ra2 is a candidate Gene for Eae29

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. IL-22RA2 Associates with Multiple Sclerosis and Macrophage Effector Mechanisms in Experimental Neuroinflammation. Beyeen AD, etal., J Immunol. 2010 Dec 1;185(11):6883-6890. Epub 2010 Nov 1.
2. Data registered by Dr. Olsson Personal communication between Dr. Olsson and the RGD curators.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
62024Rps12ribosomal protein S1212168085421683010Rat
619706Ptprkprotein tyrosine phosphatase, receptor type, K11673889617236687Rat
2150Arg1arginase 112047587820488422Rat
3947Utrnutrophin167208547224313Rat
61988Hivep2HIVEP zinc finger 2183582058555993Rat
621016Pde7bphosphodiesterase 7B11517400115493267Rat
631382Taar4trace amine-associated receptor 412148105021482093Rat
3181Nmbrneuromedin B receptor191150339146081Rat
631385Taar7htrace amine-associated receptor 7h12137349321374569Rat
631386Taar8btrace amine-associated receptor 8b12130297821307489Rat
631388Taar7gtrace amine-associated receptor 7g12138736021388436Rat
631391Taar8atrace amine associated receptor 8A12133276321333887Rat
631395Taar7dtrace-amine-associated receptor 7d12140932521410401Rat
620523Tcf21transcription factor 2112270135322704212Rat
621621Taar1trace-amine-associated receptor 112151774221518740Rat
631390Taar8ctrace amine-associated receptor 8c12128984321290877Rat
631392Taar7btrace amine-associated receptor 7b12144083221441908Rat
631387Taar7atrace amine-associated receptor 7a12145093321452009Rat
631394Taar7etrace-amine-associated receptor 7e12140171621402792Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112069874620763741Rat
631383Taar9trace amine-associated receptor 912127497221275988Rat
708511Enpp3ectonucleotide pyrophosphatase/phosphodiesterase 312056370020635044Rat
621636Pex3peroxisomal biogenesis factor 3179125087954474Rat
3014Plagl1PLAG1 like zinc finger 1174772957517229Rat
620112Cited2Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 211231242612314869Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12139567621396564Rat
631384Taar6trace amine-associated receptor 612145847521459512Rat
621392Ccn2cellular communication network factor 212080219920805315Rat
619856Trdntriadin12395565124410494Rat
1303141Phactr2phosphatase and actin regulator 2175912547860431Rat
620570Ifngr1interferon gamma receptor 111433316714351799Rat
1303053Fuca2alpha-L-fucosidase 2178859867900777Rat
1304818Hecahdc homolog, cell cycle regulator11252544512575358Rat
1303071Akap7A-kinase anchoring protein 712008719020217799Rat
619747Stx7syntaxin 712119707521237320Rat
1304744Stx11syntaxin 11172934277320060Rat
1308551Adgrg6adhesion G protein-coupled receptor G6188128898954239Rat
1307131Reps1RALBP1 associated Eps domain containing 111269774212775562Rat
1307979Txlnbtaxilin beta11240484512449977Rat
1305053Arhgap18Rho GTPase activating protein 1811840353118637306Rat
3668Sgk1serum/glucocorticoid regulated kinase 112298025723098122Rat
1308509Hbs1lHBS1-like translational GTPase11609252916170082Rat
1306565Map3k5mitogen-activated protein kinase kinase kinase 511468577614904935Rat
1307335Il20rainterleukin 20 receptor subunit alpha11442421514494226Rat
1305031Vta1vesicle trafficking 1190328619080635Rat
1306801Clvs2clavesin 212373566023842685Rat
1305997Olig3oligodendrocyte transcription factor 311408125914083336Rat
1310175Slc2a12solute carrier family 2 member 1212280306822862204Rat
1310326Ccdc28acoiled-coil domain containing 28A11285766812872944Rat
1359185Taar5trace amine-associated receptor 512146992321470936Rat
1309428Slc35d3solute carrier family 35, member D311456548214573581Rat
1308866Map7microtubule-associated protein 711491043315037574Rat
1309903Arfgef3ARFGEF family member 311324557813404319Rat
1308483Pex7peroxisomal biogenesis factor 711458269814646686Rat
1306962Slc18b1solute carrier family 18 member B112162823521670807Rat
1307671Med23mediator complex subunit 2312049031520558461Rat
1311553Hebp2heme binding protein 211319498213201777Rat
1310075Vnn1vanin 112153708421547395Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412217227522415978Rat
1309642Adat2adenosine deaminase, tRNA-specific 2179545207975254Rat
1310294Perpp53 apoptosis effector related to PMP2211354206713554514Rat
1305474L3mbtl3L3MBTL histone methyl-lysine binding protein 311898876319089247Rat
1308889Lama2laminin subunit alpha 211767267518320641Rat
1310033Moxd1monooxygenase, DBH-like 112107512421165348Rat
1311240Taar2trace amine associated receptor 212150029021504259Rat
1303040Ahi1Abelson helper integration site 111576248515891213Rat
1560020MybMYB proto-oncogene, transcription factor11593977115973367Rat
1560849Themisthymocyte selection associated11643390616623889Rat
1308124Nhsl1NHS-like 111295652513188580Rat
1303169Il22ra2interleukin 22 receptor subunit alpha 211435373614377844Rat
1359258Taar7ctrace amine-associated receptor 7C12142936421430440Rat
1309704Bclaf1BCL2-associated transcription factor 111508843615117666Rat
1311264Ltv1LTV1 ribosome biogenesis factor175656737578398Rat
1564024Tmem200atransmembrane protein 200A11932364619408324Rat
1559962Hmgb2-ps6high mobility group box 2, pseudogene 611940916119410260Rat
1560609Vnn3vanin 312157136421583626Rat
1560303Smokl1sperm motility kinase like 111344112013451989Rat
1359566Taar3trace amine-associated receptor 312149153821492566Rat
1586689Calm1-ps2calmodulin 1, pseudogene 211971054019711425Rat
1562920Aig1androgen-induced 1180464308269276Rat
1563977Epb41l2erythrocyte membrane protein band 4.1-like 211986301020037795Rat
1589982Ahcy-ps10adenosylhomocysteinase, pseudogene 1012032070620322406Rat
1590218Aldh8a1aldehyde dehydrogenase 8 family, member A111618394016203385Rat
1589061Rplp0-ps4ribosomal protein lateral stalk subunit P0, pseudogene 411735763717358522Rat
1586664Smlr1small leucine-rich protein 111983739019858906Rat
1587834Samd3sterile alpha motif domain containing 311910076719148241Rat
1586108Zbed4-ps1zinc finger, BED-type containing 4, pseudogene 112390376923906388Rat
1586110Ruvbl1-ps2RuvB-like AAA ATPase 1, pseudogene 211751953517521754Rat
1586112Cptp-ps1ceramide-1-phosphate transfer protein, pseudogene 111413220714138351Rat
1586113Rpl10a-ps13ribosomal protein L10A, pseudogene 1311378048913781254Rat
1586993Sf3b5splicing factor 3b, subunit 5173570407357752Rat
1586115Hsp90aa1-ps2heat shock protein 90 alpha family class A member 1, pseudogene 211249488512496646Rat
1586116Ftl1-ps4ferritin light chain 1, pseudogene 4174167757429173Rat
1586117Plxnb2-ps1plexin B2, pseudogene 1166635766665946Rat
1586118Slc25a53-ps1solute carrier family 25, member 53, pseudogene 1163305346331811Rat
1583256AbraclABRA C-terminal like11265495112665143Rat
1587386Fth1-ps4ferritin heavy chain 1, pseudogene 412363807123638977Rat
1589275Tnfaip3TNF alpha induced protein 311370921113724291Rat
1597456Tbpl1TATA-box binding protein like 112277789222803305Rat
1593146Mrpl30-ps10mitochondrial ribosomal protein L30, pseudogene 1012106800321068796Rat
1593147Ldha-ps21lactate dehydrogenase A, pseudogene 21166243716625798Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12135270821353774Rat
1598009Gje1gap junction protein, epsilon 1190857899088204Rat
1598314Rbs10l2ribosomal protein S10 like 211894812418948790Rat
2319701Zc2hc1bzinc finger, C2HC-type containing 1B175372917565054Rat
2321467Tpt1l1tumor protein, translationally-controlled 1 like 111910738919108208Rat
2321841Ccnb2-ps2cyclin B2, pseudogene 212009973220101236Rat
6486936C1h3orf38similar to human chromosome 3 open reading frame 38186842558685096Rat
6494892Mtfr2mitochondrial fission regulator 211512323215138632Rat
6499508LOC100910237uncharacterized LOC10091023712167994021680668Rat
7499806LOC102547350uncharacterized LOC10254735011482977214845233Rat
7505831LOC102550206uncharacterized LOC10255020611379689813838511Rat
7532311LOC102553363uncharacterized LOC10255336312064633620663699Rat
7511531LOC102552728uncharacterized LOC10255272812007906220087734Rat
7650092LOC102553526uncharacterized LOC10255352612093016520935165Rat
7636934Rpl29-ps7ribosomal protein L29, pseudogene 712150126521502159Rat
7653582LOC102546491uncharacterized LOC10254649111193454012088738Rat
7624072LOC102553457uncharacterized LOC10255345712093516520952028Rat
7654508LOC102547285uncharacterized LOC102547285161154836129261Rat
7576411LOC102552459uncharacterized LOC10255245911078268410845437Rat
7630698LOC102555830uncharacterized LOC10255583012286840122877359Rat
7594200LOC102552210uncharacterized LOC10255221011001495210025253Rat
7620758LOC102546604uncharacterized LOC10254660411207361212099782Rat
7546851LOC102546831uncharacterized LOC10254683111216969212289440Rat
7579399LOC102554376uncharacterized LOC10255437612216858822169892Rat
7601783LOC10254760460S ribosomal protein L27a-like11466327114663713Rat
7603956Rpl29-ps18ribosomal protein L29, pseudogene 1811321719913218439Rat
7583283LOC102546868uncharacterized LOC10254686812353050623533251Rat
7605452LOC102547411uncharacterized LOC10254741111468074314684752Rat
7687370LOC102552144uncharacterized LOC102552144196839259743071Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212466862725877051Rat
7697240Map7l-ps1microtubule-associated protein 7 like, pseudogene 111501409915020672Rat
7744936Amn1-ps1antagonist of mitotic exit network 1, pseudogene 111653730916537787Rat
7745301LOC102552962uncharacterized LOC10255296212034200220349386Rat
7676044LOC102549339uncharacterized LOC10254933911292387212947646Rat
7678966LOC102555465uncharacterized LOC10255546512257657822594738Rat
7709341LOC102549233uncharacterized LOC10254923311287300512890018Rat
9097021Eef1a1-ps14eukaryotic translation elongation factor 1 alpha 1, pseudogene 14171820187186559Rat
9075724LOC103690928U6 snRNA-associated Sm-like protein LSm5 pseudogene11846343218469878Rat
9117395LOC103690921uncharacterized LOC103690921190806609091019Rat
9246970Ect2lepithelial cell transforming 2 like11277570512857538Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12379865323799648Rat
9302186LOC103690933uncharacterized LOC10369093312170462321734218Rat
9343707LOC103690943uncharacterized LOC10369094312448027524481011Rat
11364909LOC108349493uncharacterized LOC10834949311226868712276265Rat
11437209Rpl36a-ps17ribosomal protein L36A, pseudogene 1712111964521120113Rat
11437431LOC108349187uncharacterized LOC10834918712123747721243704Rat
11357155LOC108349492uncharacterized LOC10834949211222771812234666Rat
11363865LOC10834900860S ribosomal protein L7a pseudogene11653594916536761Rat
11439716LOC108349499uncharacterized LOC10834949911557391515579154Rat
11365258LOC108349443uncharacterized LOC10834944312185917221870434Rat
11368884LOC108349236uncharacterized LOC10834923612310406023112500Rat
11430648LOC108349488uncharacterized LOC108349488189768408984115Rat
11452393LOC10834972640S ribosomal protein S6 pseudogene11386791813868679Rat
11452897Rps29l1ribosomal protein S29 like 112126179721262125Rat
11414134LOC108348899uncharacterized LOC10834889912348657323493321Rat
11426093LOC108349489uncharacterized LOC10834948911002570410057894Rat
11385252Rpl36a-ps9ribosomal protein L36A, pseudogene 911975479819755162Rat
11386974LOC108349497uncharacterized LOC10834949711346252713519309Rat
113875701700020N01RiklRIKEN cDNA 1700020N01 gene like12325955723395640Rat
11389337LOC108349494uncharacterized LOC10834949411227933212287765Rat
11401898Trnal-uaa1transfer RNA leucine (anticodon UAA) 1172719807272062Rat
11404601LOC10834876960S ribosomal protein L7a pseudogene11365780113658593Rat
11508573LOC10834872660S ribosomal protein L21 pseudogene12347687823477482Rat
11512463LOC108349469uncharacterized LOC10834946912330225523315783Rat
41235294Trnaa-agc77transfer RNA alanine (anticodon AGC) 7712458968624589766Rat
41355283LOC120098782uncharacterized LOC120098782173507417353786Rat
41355366LOC120100430small nucleolar RNA SNORA17193835239383653Rat
41088638LOC120098790uncharacterized LOC12009879011226686012268679Rat
41277239LOC120100214U7 small nuclear RNA11037918910379250Rat
41284286LOC120098779uncharacterized LOC120098779162008346241934Rat
41357357LOC120098805uncharacterized LOC12009880511688652316887639Rat
41286023LOC120098799uncharacterized LOC12009879911445455814462032Rat
41325772LOC120100129U6 spliceosomal RNA11776047217760578Rat
41115603LOC120098885uncharacterized LOC12009888512276637922777891Rat
41091704LOC120100351small nucleolar RNA SNORA31163083546308480Rat
41146272Rnu11-3RNA, U11 small nuclear 311938143719381570Rat
41175611LOC120100154U6 spliceosomal RNA11506729615067402Rat
41260918LOC120098884uncharacterized LOC12009888412275015822766306Rat
41261236LOC120098786uncharacterized LOC120098786185864828641715Rat
41261521LOC120100131U6 spliceosomal RNA12313135023131456Rat
41261577LOC120098791uncharacterized LOC12009879111228025712285820Rat
41331278LOC120100369small nucleolar RNA SNORA4111567916915679309Rat
41150335LOC120098803uncharacterized LOC12009880311566331615668122Rat
41177791LOC120098806uncharacterized LOC12009880611679110416795556Rat
41124938LOC120100484small nucleolar RNA U1312340034023400445Rat
41289337LOC120098792developmental pluripotency-associated protein 5A-like11243850612441174Rat
41158208LOC120097186uncharacterized LOC12009718611449401614512881Rat
41183125LOC120098836uncharacterized LOC12009883612056147420565071Rat
41183496Sub1-ps3SUB1 regulator of transcription, pseudogene 311426429814265312Rat
41195287Rps2-ps34ribosomal protein S2, pseudogene 3411407029014072753Rat
41195942LOC120098787uncharacterized LOC12009878711084522710887107Rat
41348685LOC120100374small nucleolar RNA SNORA42/SNORA80 family11482858714828721Rat
41071539LOC120100143U6 spliceosomal RNA11832812518328231Rat
41104967LOC120097699cytochrome b-c1 complex subunit 10-like11875161218751912Rat
41228825Atg4b-ps1autophagy related 4B, cysteine peptidase, pseudogene 111655334516558705Rat
41107286LOC120098800uncharacterized LOC12009880011502561015026234Rat
41198301LOC120098802uncharacterized LOC12009880211556374615573829Rat
41230696Snord100small nucleolar RNA, C/D box 10012168226921682343Rat
41295609Rpl13a-ps9ribosomal protein L13A, pseudogene 9184240878425747Rat
41275469LOC120100489U2 spliceosomal RNA11064428310644402Rat
41133462LOC120098794uncharacterized LOC12009879411396290913979037Rat
41202378LOC120098783uncharacterized LOC120098783178489847858411Rat
40944528Cfl1-ps8cofilin 1, pseudogene 8180262218031917Rat
40971154LOC120100212U7 small nuclear RNA11037737810377442Rat
41011483LOC120097411igE-binding protein-like12160060821621842Rat
41340848LOC120098795uncharacterized LOC12009879511410039714118505Rat
40957540LOC120100405small nucleolar RNA SNORA48173470757347218Rat
40957964LOC120098785uncharacterized LOC120098785180216018025425Rat
40983824LOC120098809uncharacterized LOC12009880911971052519718514Rat
41003244LOC120098789ATP-dependent RNA helicase DBP3-like11208324212084262Rat
40933802LOC120098871uncharacterized LOC12009887112234033222351065Rat
41005445LOC120098801uncharacterized LOC12009880111503629615043478Rat
40936004LOC120100161U6 spliceosomal RNA11306786113067967Rat
40987896LOC120098781uncharacterized LOC120098781173467257349946Rat
40969921LOC120098796uncharacterized LOC12009879611423540814243329Rat
40996452LOC120098798uncharacterized LOC12009879811439383514404874Rat
41312082LOC120100169U6 spliceosomal RNA11624352816243631Rat
41024257Rpl23a-ps3ribosomal protein L23a, pseudogene 311615578316163479Rat
41244766Snora33small nucleolar RNA, H/ACA box 3312168260321682729Rat
41312817LOC120098793uncharacterized LOC12009879311376777613771837Rat
41314157LOC120098807uncharacterized LOC12009880711824565718317592Rat
41077590LOC120098893uncharacterized LOC12009889312313267323172438Rat
41078939LOC120098804uncharacterized LOC12009880411672294416736191Rat
41248032Npm1-ps5nucleophosmin 1, pseudogene 511800684618007514Rat
41257596LOC120097350translation initiation factor IF-2-like11898864418992023Rat
41057305LOC120098788uncharacterized LOC12009878811190503611913976Rat
41221841LOC120100424small nucleolar RNA SNORA17160057856005914Rat
41302774LOC120098808uncharacterized LOC12009880811959611119606529Rat
41018580LOC120098780uncharacterized LOC120098780173338417336406Rat
41067050LOC120100438small nucleolar RNA SNORA1712011976620119889Rat
41042371LOC120100344small nucleolar RNA SNORD10112168155721681630Rat
41043647LOC120100398U2 spliceosomal RNA12047052420470672Rat
41021964Trnaa-agc27transfer RNA alanine (anticodon AGC) 27186529468653026Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34449D1Mgh17149186064968606632Ratregion
34662D1Mgh215012234064722340797Ratregion
36137D1Rat516211043533910435501Ratregion
36199D1Rat112911024655010246679Ratregion
36303D1Rat626511933357119333836Ratregion
37296D1Rat14821111576058215760793Ratregion
37364D1Rat15023811524559815245841Ratregion
35467D1Rat717311543162115431794Ratregion
37198D1Rat18622511532110015321325Ratregion
37658D1Rat247216162366426236858Ratregion
36568D1Rat417011148131211481482Ratregion
34878D1Rat313611172494211725077Ratregion
35685D1Rat1012812469741724697545Ratregion
38028D1Rat12110312076315820763261Ratregion
40704D1Rat25220512339999023400201Ratregion
38640D1Rat15320712070439820704605Ratregion
39234D1Rat248229159258775926118Ratregion
42064D1Arb223911381137413811615Ratregion
42077D1Arb332612234059822340924Ratregion
42264D1Rat46311012220216622202271Ratregion
42443D1Rat388219180864688086692Ratregion
42444D1Rat32921711206940612069621Ratregion
42445D1Rat49113911294663112946770Ratregion
42446D1Rat38921111483195914832174Ratregion
42448D1Rat39220011912178019121980Ratregion
42449D1Rat39123811964618819646425Ratregion
42451D1Rat47920412016619620166426Ratregion
42451D1Rat47920412016622220166426Ratregion
40768D1Rat25011711371715813717273Ratregion
40880D1Rat249237178166717816912Ratregion
41808D1Rat328141196554079655550Ratregion
41870D1Rat327230178182617818492Ratregion
43172D1Got6206167655846766052Ratregion
43172D1Got6206167658466766052Ratregion
43173D1Got7127173509927351121Ratregion
43174D1Got8230185281138528343Ratregion
43175D1Mgh16143159258745926029Ratregion
43180D1Got1012811284625212846380Ratregion
43182D1Got1424511345060313450845Ratregion
43183D1Got1517511241507812415253Ratregion
43185D1Got925611332372613323984Ratregion
43187D1Got1815411521867215218826Ratregion
43188D1Got1219611415491514155106Ratregion
43189D1Got2112511531327815313403Ratregion
43191D1Got2318011821206118212241Ratregion
43192D1Got2416511863955918639724Ratregion
43193D1Got1115011653480616534956Ratregion
43194D1Got2517311878235418782525Ratregion
43195D1Got1918611727253717272723Ratregion
43196D1Got2220411851322218513426Ratregion
43197D1Got2620612023483820235046Ratregion
43198D1Got2920212232122222321426Ratregion
43200D1Got2714912298244022982586Ratregion
43201D1Got3114612284279422842940Ratregion
60254D1Got5210165973546597559Ratregion
625791D1Got2021911534181115342030Ratregion
62435D1Uia13274167402216740495Ratregion
66609D1Mco3419311347446913474678Ratregion
1576372D1Ztm1015211524841715248567Ratregion
1576374D1Ztm822211520283215203054Ratregion
1576384D1Ztm923411518893515189169Ratregion
1629050D1Got366125184031288403253Ratregion
1629386D1Wox8215012405052124050671Ratregion
1635008D1Got37228211261573912616017Ratregion
1635563D1Got3019111860661118606702Ratregion
7206012Meis218611231340312313589Ratregion
7193103AA92619218411209946312099647Ratregion
5035839PMC22491P150012010043920100939Ratregion
5038614Vnn111612154381021543926Ratregion
5036055Tcf2112412270160722701731Ratregion
5039254RH12760020011517996615180166Ratregion
5037085RH78408184185548808555064Ratregion
5035500BM38960421911472775414727973Ratregion
5035587RH1286013111231458512314716Ratregion
5035675RH47174134188296218829755Ratregion
7206230Ctgf55712080271020803267Ratregion
5031496AU04813218512440911924409304Ratregion
5026226RH13139919611370943713709633Ratregion
5031612AU04773722611334234313342569Ratregion
5028925RH14284310811994399519944103Ratregion
5028987RH14308324211477311514773357Ratregion
5029031RH14325216711301034413010511Ratregion
5031704AU04742819711312392013124117Ratregion
5026724RH133293180190331469033326Ratregion
5029329RH14438322111295556712955787Ratregion
5029335RH14440519211852949618529688Ratregion
5035436BE10686420911451659314516802Ratregion
5035280BM38606120511490404814904249Ratregion
5035326BM38495320712023996120240168Ratregion
5030197BF40168819312279809822798291Ratregion
5032929RH13699915012179018521790335Ratregion
5027617BB16129212611277531912775445Ratregion
5033169RH13783620612021605120216257Ratregion
5027793RH94761180191452799145458Ratregion
5030471BF39788015111534037815340529Ratregion
5030483BF39791221312051179220512005Ratregion
5025418RH12824020711616967716169884Ratregion
5030671BE10755917512383759223837767Ratregion
5031047BI29713717611280676312806943Ratregion
5054957RH14352314411464627314646417Ratregion
5054961RH14352529811209423512094546Ratregion
5051304RH13455619012080237620802566Ratregion
5056413RH14436420711679337816793585Ratregion
5056425RH14437126012280339622803656Ratregion
5056429RH144373118190314499031567Ratregion
5051941RH94747123167227036722826Ratregion
5055285RH143713100180464868046586Ratregion
5058538AI5557459112080227420802365Ratregion
5059586BE09735616011324656713246727Ratregion
5052460AU04042412012379748523797605Ratregion
5055323RH143735112167925046792616Ratregion
5058982BE10266615811319630313196461Ratregion
5059732BI29183921611850732718507543Ratregion
5058484BI29043720912082262220822833Ratregion
5059192BF38762115712338643023386587Ratregion
5053291RH14256310311483338014833483Ratregion
5059356AW53021018611318796513188151Ratregion
5053765RH142838126183691798369305Ratregion
5050866RH13430318412048817720488361Ratregion
5050410RH13404018312009977920099962Ratregion
5052793RH14227715411277405612775373Ratregion
5052993RH142392168173571547357322Ratregion
5054317RH14315514411589089215891036Ratregion
5050634RH13417018612076870520768891Ratregion
5051487AI83529910911231455512314664Ratregion
5054723RH14338810912151649521516604Ratregion
5043372RH12998819412049044820490642Ratregion
5044808RH13081521911468337814684659Ratregion
5041248RH12874818012404721524047395Ratregion
5043784RH13022518011613351116133691Ratregion
5045192RH13103721812153762621537844Ratregion
5041602RH128951191180464848046675Ratregion
5041706RH12901119911252556112525760Ratregion
5041714RH12901618011832043618320616Ratregion
5044646RH130723220190274459027665Ratregion
5046404RH13173320612107534121075547Ratregion
5046164RH13159521811287439512874613Ratregion
5049292RH13339718711511730415117491Ratregion
5046724RH13191820411589183315892037Ratregion
5049350RH133430190188151148815304Ratregion
5042106RH12924319211986308019863272Ratregion
5042226RH12931215512298031722980472Ratregion
5042482RH12946020811673758916737797Ratregion
5049622RH133586193179750417975234Ratregion
5040382RH128251217175914877591704Ratregion
5040434RH12828118711231379612313983Ratregion
7191235Calm1011971107619711989Ratregion
5042582RH12952219111285776412857955Ratregion
5040950RH12857718111673762116737802Ratregion
5041186RH1287120180468138046992Ratregion
5041202RH12872119611355427313554469Ratregion
5072118RH136661185170833667083551Ratregion
5075848RH13883219211469016014690352Ratregion
5076548RH13924012412017497420175098Ratregion
5074652RH13814014812303553423035682Ratregion
5076574RH13925514412428317024283314Ratregion
5075260RH138492200185223148522514Ratregion
5074782RH13821520012336127623361476Ratregion
5075010RH13834724812460095624601203Ratregion
5077102RH13956222012384796823848188Ratregion
5077250RH13964820011265530312655503Ratregion
5077202RH13962122012076331920763539Ratregion
5077312RH13968418312182160621821789Ratregion
5077464RH13977118912241555222415741Ratregion
5077496RH13978918711643165616431843Ratregion
5077934RH14004420412179052421790728Ratregion
5077934RH14004420412179052421790728Ratregion
5077938RH140046205175971967597401Ratregion
5080066RH14136318511435153614351721Ratregion
5070546RH13456320412162835921628563Ratregion
5080456RH141589216179127317912947Ratregion
5080496RH14161220811508683115087039Ratregion
5078822RH140572184175019217502105Ratregion
5070550RH134566212175657917566003Ratregion
5071964RH13538618411532949915329683Ratregion
5074468RH13803421111791035917910570Ratregion
5073488RH13746518411501989815020082Ratregion
5073492RH13746718411588269915882883Ratregion
5072268RH13675112311278697012787093Ratregion
5071698RH13523318311287166512871848Ratregion
5063426BE10768315811317848713178645Ratregion
5067730AU047570123163813276381450Ratregion
5067900AU04746928112296707722967358Ratregion
5068386AU04717815511985755919857711Ratregion
5069606AU04638619012117504921175233Ratregion
5069776AU02881210411716668417166783Ratregion
5060288AW53112917611584260415842780Ratregion
5061918BE112042155175954737595628Ratregion
5061972BF39701815811938125319381411Ratregion
5062050BI294821150176379097638059Ratregion
5065246BE12127920411587901315879217Ratregion
5063826AW535543169186010108601178Ratregion
5060890BF40125717512301713623017311Ratregion
5062704BF40391012012120440321204523Ratregion
5064412BI30214117411289235612892530Ratregion
5063768AW535138185181419688142153Ratregion
5065506BE109160151171725417172691Ratregion
5065808BE10990915011340307513403225Ratregion
5066258PMC126259P698185540878554185Ratregion
5061196BE09920319611356062313560819Ratregion
5063074BF41028219111899173118991922Ratregion
5063100BF39838021711939844519398661Ratregion
5063146BI30135719212225053922250731Ratregion
5066298PMC140821P116911610473916104908Ratregion
5063284BI301647206174877037487913Ratregion
5066550AU048290140174486597448799Ratregion
5084210AA8494139412406840324068497Ratregion
5086867BM38820316411346814613468310Ratregion
5086871BM387506155181995728199727Ratregion
5082069BF40931620411500897915009183Ratregion
5082109BF409594124184615038461624Ratregion
5087064BQ19428217411350640313506577Ratregion
5087398EST-CFZ9775635211771811217718464Ratregion
5082603BE11984115111447508414475235Ratregion
5086500BQ20563815011316547213165622Ratregion
5088919AU04884822712124385421244081Ratregion
5089105AU04895715012076108520761237Ratregion
5089917AU04944014911508179315081942Ratregion
5083145BF39087216011610502816105188Ratregion
5090697AU04990720311521859815218801Ratregion
5090815AU049979216165973546597568Ratregion
5083919AI40666820211511712415117326Ratregion
5089675AU049296224190744119074635Ratregion
5090607AU049853235171338617134098Ratregion
5084170AA893893138179742527974390Ratregion
5081563AA9261929911209951912099618Ratregion
5081875BE11860119011287287712873067Ratregion
5085094BQ20957716811600277216002940Ratregion
5088477AU04859318412023483820235024Ratregion
5085179BQ195664165178117587811923Ratregion
5088805AU04878326912298230822982576Ratregion
5081052RH14193719011503711815037308Ratregion
5090033AU04951028911787099917871286Ratregion
5090263AU04964714311334243513342578Ratregion
5089023AU04890919511567294415673139Ratregion
5080744RH14175718011324322813243408Ratregion
5084772AI17200614312395586223956005Ratregion
5084896AA85190196188117318811827Ratregion
5085302BQ195873207180525668052773Ratregion
5505089Taar481312148110421481917Ratregion
5505087Taar182612151780821518634Ratregion
5505091Taar990112127503021275931Ratregion
5505093Taar580712147005421470861Ratregion
5505095Taar278512150047221501257Ratregion
5505097Taar389012149165521492545Ratregion
5506300DXS984982611971396219714788Ratregion
5506274D14S1058140611455858114559987Ratregion
5507133UniSTS:22476416011595900715959167Ratregion
5499607MARC_2026-2027:991932441:135311910750919107862Ratregion
5500037UniSTS:23631932512324212223242447Ratregion
5500041UniSTS:23631720011509903415099234Ratregion
5502275RH12424210412363871923638823Ratregion
5503414D1S282795611462526214626218Ratregion
5501123PMC140821P213211616881016168942Ratregion
5505218D10Csu144611448329014483736Ratregion
5505220D10Csu3011510129115101884Ratregion
5502742UMNe5070181268248127512Ratregion
5502742UMNe5070181270328127512Ratregion
Position Markers

Flank 1: (D1Rat248)
Rat AssemblyChrPosition (strand)Source
mRatBN7.215,925,877 - 5,926,118 (+)MAPPER
Rnor_6.015,655,772 - 5,656,012NCBI
Rnor_5.017,306,802 - 7,307,042UniSTS
RGSC_v3.416,253,950 - 6,254,188UniSTS
RGSC_v3.416,253,932 - 6,254,263RGD
RGSC_v3.116,253,950 - 6,254,188RGD
Celera14,440,935 - 4,441,167UniSTS
RH 3.4 Map1105.3RGD
RH 3.4 Map1105.3UniSTS
RH 2.0 Map10.0RGD
SHRSP x BN Map14.7199RGD
Peak: (D1Got11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2116,534,806 - 16,534,956 (+)MAPPER
Rnor_6.0117,250,010 - 17,250,159NCBI
Rnor_5.0118,405,076 - 18,405,225UniSTS
RGSC_v3.4117,120,760 - 17,120,910RGD
RGSC_v3.4117,120,761 - 17,120,910UniSTS
RGSC_v3.1117,120,823 - 17,120,972RGD
Celera114,948,670 - 14,948,819UniSTS
RH 3.4 Map1157.3UniSTS
RH 3.4 Map1157.3RGD
RH 2.0 Map1106.0RGD
Cytogenetic Map1p12UniSTS
Flank 2: (D1Rat10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2124,697,417 - 24,697,545 (+)MAPPER
Rnor_6.0185,706,847 - 85,706,974NCBI
Rnor_5.0186,916,948 - 86,917,075UniSTS
RGSC_v3.4125,271,049 - 25,271,177RGD
RGSC_v3.4125,271,050 - 25,271,177UniSTS
RGSC_v3.1125,273,995 - 25,274,122RGD
Celera123,392,537 - 23,392,664UniSTS
RH 3.4 Map1252.6UniSTS
RH 3.4 Map1252.6RGD
RH 2.0 Map1176.0RGD
SHRSP x BN Map115.98RGD
FHH x ACI Map121.7699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)11532110019121980Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-06 Eae29  Experimental allergic encephalomyelitis QTL 29  Eae29  Experimental Autoimmune Encephalomyelitis QTL 29  Name updated 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general this region was observed in Kini:DA,PVG-G10 4888518
qtl_general measurement method: animals were monitored day 8 until 35 days after immunization and Eae scored on the scale of 0-4; when the disease was severe the rats were killed 4888518
qtl_general region responsible for disease severity phenotypes, cumulative and maximum disease score 4888518
qtl_general inducing agent: myelin oligodendrocyte glycoprotein aa1-125 4888518
qtl_general software used: R/QTL 4888518