GWAS1058229_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1058229_H (bactericidal permeability-increasing protein measurement QTL GWAS1058229 (human)) Homo sapiens

Symbol: GWAS1058229_H
Name: bactericidal permeability-increasing protein measurement QTL GWAS1058229 (human)
RGD ID: 407409253
Trait: neutrophil phagocytosis trait   (VT:0002467)    
LOD Score: Not Available
P Value: 7.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382038,338,968 - 38,338,969RGD_MAPPER_PIPELINEGRCh38
GRCh372036,967,370 - 36,967,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1058229_HHumanneutrophil phagocytosis trait  IAGPrs2154187405850206Based on the EFO term IDGWAS_CATALOGPMID:36168886

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1058229_HHumanbactericidal permeability-increasing protein measurement  IAGPrs2154187405850206 GWAS_CATALOGPMID:36168886
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2154187)
Human AssemblyChrPosition (strand)Source
GRCh382038,338,968 - 38,338,969RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407384260GWAS1033236_Hbasophil count QTL GWAS1033236 (human)2e-10basophil quantity (VT:0002607)blood basophil count (CMO:0000034)203833896838338969Human
407409253GWAS1058229_Hbactericidal permeability-increasing protein measurement QTL GWAS1058229 (human)7e-12neutrophil phagocytosis trait (VT:0002467)203833896838338969Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1033236_H GCST90002379 Basophil count 408,112 British individuals A 0.528289 2E-10 9.699 rs2154187 0.014166179 basophil count (EFO:0005090)
PMID:32888494
GWAS1058229_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.344123 7E-12 11.155 rs2154187 0.192285 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST90161970 GWAS Catalog

RGD Curation Notes
Note Type Note Reference