GWAS1045954_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1045954_H (kininogen-1 measurement QTL GWAS1045954 (human)) Homo sapiens

Symbol: GWAS1045954_H
Name: kininogen-1 measurement QTL GWAS1045954 (human)
RGD ID: 407396978
Trait: kininogen-1 measurement
LOD Score: Not Available
P Value: 1E-96
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383186,733,074 - 186,733,075RGD_MAPPER_PIPELINEGRCh38
GRCh373186,450,863 - 186,450,864RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1045954_HHumankininogen-1 measurement  IAGPrs5030049405850206 GWAS_CATALOGPMID:28240269
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603713KNG1kininogen 13186717359186744410Human

Position Markers

Peak: (rs5030049)
Human AssemblyChrPosition (strand)Source
GRCh383186,733,074 - 186,733,075RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407415192GWAS1064168_Hblood protein measurement QTL GWAS1064168 (human)5e-12blood protein measurementblood protein measurement (CMO:0000028)3186733074186733075Human
407417481GWAS1066457_Hblood protein measurement QTL GWAS1066457 (human)2e-59blood protein measurementblood protein measurement (CMO:0000028)3186733074186733075Human
406960388GWAS609364_Hadrenomedullin measurement QTL GWAS609364 (human)3e-34kidney adrenomedullin amount (VT:0010754)kidney adrenomedullin level (CMO:0002916)3186733074186733075Human
407417665GWAS1066641_Hblood protein measurement QTL GWAS1066641 (human)3e-21blood protein measurementblood protein measurement (CMO:0000028)3186733074186733075Human
406955704GWAS604680_Hbcl-2-like protein 2 measurement QTL GWAS604680 (human)1e-24bcl-2-like protein 2 measurement3186733074186733075Human
407396978GWAS1045954_Hkininogen-1 measurement QTL GWAS1045954 (human)1e-96kininogen-1 measurement3186733074186733075Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS604680_H GCST90246630 Bcl-2-like protein 2 levels 10,708 European ancestry individuals T 0.89 1E-24 24 rs5030049 0.222 bcl-2-like protein 2 measurement (EFO:0021928)
 PMID:34648354
GWAS609364_H GCST90246444 Adrenomedullin levels 10,708 European ancestry individuals T 0.89 3E-34 33.523 rs5030049 0.256 adrenomedullin measurement (EFO:0010909)
 PMID:34648354
GWAS1045954_H GCST90101237 Kininogen-1 levels 997 European ancestry individuals ? NR 1E-96 96 rs5030049 N/A kininogen-1 measurement (EFO:0008198)
 PMID:28240269
GWAS1064168_H GCST90087371 Serum levels of protein BCL2L2 5,344 Icelandic ancestry individuals C 0.1193 5E-12 11.302 rs5030049 0.185577 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1066457_H GCST90088814 Serum levels of protein KNG1 5,347 Icelandic ancestry individuals C 0.1193 2E-59 58.699 rs5030049 0.444676 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1066641_H GCST90087796 Serum levels of protein ADM 5,353 Icelandic ancestry individuals C 0.1193 3E-21 20.523 rs5030049 0.263818 blood protein measurement (EFO:0007937)
 PMID:35078996
Database Acc Id Source(s)
GWAS Catalog GCST90101237 GWAS Catalog

RGD Curation Notes
Note Type Note Reference