GWAS939866_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS939866_H (bactericidal permeability-increasing protein measurement QTL GWAS939866 (human)) Homo sapiens

Symbol: GWAS939866_H
Name: bactericidal permeability-increasing protein measurement QTL GWAS939866 (human)
RGD ID: 407290890
Trait: neutrophil phagocytosis trait   (VT:0002467)    
LOD Score: Not Available
P Value: 5.0E-33
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382038,329,713 - 38,329,714RGD_MAPPER_PIPELINEGRCh38
GRCh372036,958,115 - 36,958,116RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS939866_HHumanneutrophil phagocytosis trait  IAGPrs59192196405850206Based on the EFO term IDGWAS_CATALOGPMID:36168886

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS939866_HHumanbactericidal permeability-increasing protein measurement  IAGPrs59192196405850206 GWAS_CATALOGPMID:36168886
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352137BPIbactericidal permeability increasing protein203830415638337505Human

Position Markers

Peak: (rs59192196)
Human AssemblyChrPosition (strand)Source
GRCh382038,329,713 - 38,329,714RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407290890GWAS939866_Hbactericidal permeability-increasing protein measurement QTL GWAS939866 (human)5e-33neutrophil phagocytosis trait (VT:0002467)203832971338329714Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS939866_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.141738 5E-33 32.302 rs59192196 0.459773 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST90161970 GWAS Catalog

RGD Curation Notes
Note Type Note Reference