GWAS932694_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS932694_H (skin hydration measurement QTL GWAS932694 (human)) Homo sapiens

Symbol: GWAS932694_H
Name: skin hydration measurement QTL GWAS932694 (human)
RGD ID: 407283718
Trait: skin hydration measurement
Measurement Type: skin water level   (CMO:0002766)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381024,630,392 - 24,630,393RGD_MAPPER_PIPELINEGRCh38
GRCh371024,919,321 - 24,919,322RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS932694_HHumanskin water level  IAGPrs34485271405850206 GWAS_CATALOGPMID:35313536

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS932694_HHumanskin hydration measurement  IAGPrs34485271405850206 GWAS_CATALOGPMID:35313536
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1322263ARHGAP21Rho GTPase activating protein 21102458361424723887Human

Position Markers

Peak: (rs34485271)
Human AssemblyChrPosition (strand)Source
GRCh381024,630,392 - 24,630,393RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407283718GWAS932694_Hskin hydration measurement QTL GWAS932694 (human)0.000002skin hydration measurementskin water level (CMO:0002766)102463039224630393Human
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS932694_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals G NR 0.000002 5.699 rs34485271 17.49 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104592 GWAS Catalog

RGD Curation Notes
Note Type Note Reference