GWAS871958_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS871958_H (alpha-hydroxybutyric acid measurement QTL GWAS871958 (human)) Homo sapiens

Symbol: GWAS871958_H
Name: alpha-hydroxybutyric acid measurement QTL GWAS871958 (human)
RGD ID: 407222982
Trait: alpha-hydroxybutyric acid measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381233,078,287 - 33,078,288RGD_MAPPER_PIPELINEGRCh38
GRCh371233,231,221 - 33,231,222RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS871958_HHumanalpha-hydroxybutyric acid measurement  IAGPrs10844446405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs10844446)
Human AssemblyChrPosition (strand)Source
GRCh381233,078,287 - 33,078,288RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407222982GWAS871958_Halpha-hydroxybutyric acid measurement QTL GWAS871958 (human)0.000008alpha-hydroxybutyric acid measurement123307828733078288Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS871958_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000008 5.097 rs10844446 0.24103673 alpha-hydroxybutyric acid measurement (EFO:0010458)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference