GWAS794462_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS794462_H (mean arterial pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS794462 (human)) Homo sapiens

Symbol: GWAS794462_H
Name: mean arterial pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS794462 (human)
RGD ID: 407145486
Trait: mean arterial pressure, response to high sodium diet, response to dietary potassium supplementation
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382173,462,117 - 173,462,118RGD_MAPPER_PIPELINEGRCh38
GRCh372174,326,845 - 174,326,846RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs10930597)
Human AssemblyChrPosition (strand)Source
GRCh382173,462,117 - 173,462,118RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407145476GWAS794452_Hsystolic blood pressure, response to low sodium diet QTL GWAS794452 (human)0.000007systolic blood pressure, response to low sodium dietsystolic blood pressure (CMO:0000004)2173462117173462118Human
407145489GWAS794465_Hsystolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS794465 (human)0.000006systolic blood pressure, response to high sodium diet, response to dietary potassium supplementationsystolic blood pressure (CMO:0000004)2173462117173462118Human
407145244GWAS794220_Hdiastolic blood pressure, response to low sodium diet QTL GWAS794220 (human)0.0000005diastolic blood pressure, response to low sodium dietdiastolic blood pressure (CMO:0000005)2173462117173462118Human
407145486GWAS794462_Hmean arterial pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS794462 (human)1e-08mean arterial pressure, response to high sodium diet, response to dietary potassium supplementationmean arterial blood pressure (CMO:0000009)2173462117173462118Human
407145246GWAS794222_Hdiastolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS794222 (human)4e-08mean arterial pressure, response to low sodium dietmean arterial blood pressure (CMO:0000009)2173462117173462118Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS794220_H GCST002250 Blood pressure measurement (low sodium intervention) 1,850 Han Chinese ancestry individuals T 0.05 5E-7 6.302 rs10930597 3.11 diastolic blood pressure (EFO:0006336)
response to low sodium diet (EFO:0005402)
 PMID:24165912
GWAS794222_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals T 0.05 4E-8 7.398 rs10930597 3.2 diastolic blood pressure (EFO:0006336)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
GWAS794452_H GCST002250 Blood pressure measurement (low sodium intervention) 1,850 Han Chinese ancestry individuals T 0.05 0.000007 5.155 rs10930597 3.72 systolic blood pressure (EFO:0006335)
response to low sodium diet (EFO:0005402)
 PMID:24165912
GWAS794462_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals T 0.05 1E-8 8 rs10930597 3.48 mean arterial pressure (EFO:0006340)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
GWAS794465_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals T 0.05 0.000006 5.222 rs10930597 3.99 systolic blood pressure (EFO:0006335)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
None Available GCST002250 Blood pressure measurement (low sodium intervention) 1,850 Han Chinese ancestry individuals T 0.05 4E-8 7.398 rs10930597 3.37 mean arterial pressure (EFO:0006340)
response to low sodium diet (EFO:0005402)
 PMID:24165912
Database Acc Id Source(s)
GWAS Catalog GCST002252 GWAS Catalog

RGD Curation Notes
Note Type Note Reference