GWAS747291_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS747291_H (alpha-hydroxybutyric acid measurement QTL GWAS747291 (human)) Homo sapiens

Symbol: GWAS747291_H
Name: alpha-hydroxybutyric acid measurement QTL GWAS747291 (human)
RGD ID: 407098315
Trait: alpha-hydroxybutyric acid measurement
LOD Score: Not Available
P Value: 3.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382168,847,464 - 168,847,465RGD_MAPPER_PIPELINEGRCh38
GRCh372169,703,974 - 169,703,975RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS747291_HHumanalpha-hydroxybutyric acid measurement  IAGPrs11676084405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348478NOSTRINnitric oxide synthase trafficking2168786539168865514Human

Position Markers

Peak: (rs11676084)
Human AssemblyChrPosition (strand)Source
GRCh382168,847,464 - 168,847,465RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407162135GWAS811111_Hbeta-hydroxybutyric acid measurement QTL GWAS811111 (human)0.000007blood 3-hydroxybutyrate amount (VT:0010996)2168847464168847465Human
407098315GWAS747291_Halpha-hydroxybutyric acid measurement QTL GWAS747291 (human)0.0000003alpha-hydroxybutyric acid measurement2168847464168847465Human
597338629GWAS1434703_Hsexual dimorphism measurement QTL GWAS1434703 (human)1e-11sexual dimorphism measurement2168847464168847465Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS747291_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 3E-7 6.523 rs11676084 0.23657537 alpha-hydroxybutyric acid measurement (EFO:0010458)
PMID:23823483
GWAS811111_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000007 5.155 rs11676084 0.21127582 beta-hydroxybutyric acid measurement (EFO:0010465)
PMID:23823483
GWAS1434703_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 1E-11 11 rs11676084 N/A sexual dimorphism measurement (EFO:0021796)
PMID:37277458
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference