GWAS739629_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS739629_H (microscopic colitis QTL GWAS739629 (human)) Homo sapiens

Symbol: GWAS739629_H
Name: microscopic colitis QTL GWAS739629 (human)
RGD ID: 407090653
Trait: microscopic colitis
LOD Score: Not Available
P Value: 4.0E-39
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38631,515,704 - 31,515,705RGD_MAPPER_PIPELINEGRCh38
GRCh37631,483,481 - 31,483,482RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Colitis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9267445)
Human AssemblyChrPosition (strand)Source
GRCh38631,515,704 - 31,515,705RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
407166041GWAS815017_HInguinal hernia QTL GWAS815017 (human)5e-09Inguinal hernia63151570431515705Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
407090653GWAS739629_Hmicroscopic colitis QTL GWAS739629 (human)4e-39microscopic colitis63151570431515705Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS739629_H GCST90204144 Microscopic colitis 2,599 European ancestry cases, 552,343 European ancestry controls C 0.12 4E-39 38.398 rs9267445 1.8 microscopic colitis (EFO:1001295)
 PMID:37768647
GWAS815017_H GCST90027168 Inguinal hernia 13,047 European ancestry cases, 262,499 European ancestry controls G 0.86 5E-9 8.302 rs9267445 1.1 Inguinal hernia (HP:0000023)
 PMID:34382107
Database Acc Id Source(s)
GWAS Catalog GCST90204144 GWAS Catalog

RGD Curation Notes
Note Type Note Reference