GWAS739611_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS739611_H (microscopic colitis QTL GWAS739611 (human)) Homo sapiens

Symbol: GWAS739611_H
Name: microscopic colitis QTL GWAS739611 (human)
RGD ID: 407090635
Trait: microscopic colitis
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381611,095,760 - 11,095,761RGD_MAPPER_PIPELINEGRCh38
GRCh371611,189,617 - 11,189,618RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Colitis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human

Position Markers

Peak: (rs35099084)
Human AssemblyChrPosition (strand)Source
GRCh381611,095,760 - 11,095,761RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407243029GWAS892005_Heosinophilic esophagitis QTL GWAS892005 (human)2e-12eosinophilic esophagitis161109576011095761Human
407090635GWAS739611_Hmicroscopic colitis QTL GWAS739611 (human)2e-08microscopic colitis161109576011095761Human
407243017GWAS891993_Heosinophilic esophagitis QTL GWAS891993 (human)3e-09eosinophilic esophagitis161109576011095761Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS739611_H GCST90204144 Microscopic colitis 2,599 European ancestry cases, 552,343 European ancestry controls C 0.808 2E-8 7.699 rs35099084 1.3 microscopic colitis (EFO:1001295)
 PMID:37768647
GWAS891993_H GCST012381 Eosinophilic esophagitis 1,288 European ancestry male cases, 6,548 European ancestry male controls C 0.222 3E-9 8.523 rs35099084 0.71 eosinophilic esophagitis (EFO:0004232)
 PMID:34506852
GWAS892005_H GCST90027899 Eosinophilic esophagitis 1,930 European ancestry cases, 13,634 European ancestry controls T 0.22 2E-12 11.699 rs35099084 0.72 eosinophilic esophagitis (EFO:0004232)
 PMID:34506852
Database Acc Id Source(s)
GWAS Catalog GCST90204144 GWAS Catalog

RGD Curation Notes
Note Type Note Reference