GWAS710641_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS710641_H (glycerol-3-phosphate measurement QTL GWAS710641 (human)) Homo sapiens

Symbol: GWAS710641_H
Name: glycerol-3-phosphate measurement QTL GWAS710641 (human)
RGD ID: 407061665
Trait: glycerol-3-phosphate measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38189,732,376 - 9,732,377RGD_MAPPER_PIPELINEGRCh38
GRCh37189,732,373 - 9,732,374RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS710641_HHumanglycerol-3-phosphate measurement  IAGPrs6506684405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
734458RAB31RAB31, member RAS oncogene family1897083019862551Human

Position Markers

Peak: (rs6506684)
Human AssemblyChrPosition (strand)Source
GRCh38189,732,376 - 9,732,377RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407061665GWAS710641_Hglycerol-3-phosphate measurement QTL GWAS710641 (human)0.000005glycerol-3-phosphate measurement1897323769732377Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS710641_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000005 5.302 rs6506684 0.17971706 glycerol-3-phosphate measurement (EFO:0010488)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference