GWAS710639_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: GWAS710639_H (glycerol-3-phosphate measurement QTL GWAS710639 (human)) Homo sapiens

Symbol: GWAS710639_H
Name: glycerol-3-phosphate measurement QTL GWAS710639 (human)
RGD ID: 407061663
Trait: glycerol-3-phosphate measurement
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382032,778,437 - 32,778,438RGD_MAPPER_PIPELINEGRCh38
GRCh372031,366,243 - 31,366,244RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS710639_HHumanglycerol-3-phosphate measurement  IAGPrs6141813405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606037DNMT3BDNA methyltransferase 3 beta203276238532809356Human
155753180LOC127893025H3K4me1 hESC enhancer GRCh37_chr20:31365865-31366366203277805932778560Human

Position Markers

Peak: (rs6141813)
Human AssemblyChrPosition (strand)Source
GRCh382032,778,437 - 32,778,438RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407061663GWAS710639_Hglycerol-3-phosphate measurement QTL GWAS710639 (human)0.0000007glycerol-3-phosphate measurement203277843732778438Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS710639_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 7E-7 6.155 rs6141813 0.24431509 glycerol-3-phosphate measurement (EFO:0010488)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference