GWAS699691_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS699691_H (alpha-hydroxybutyric acid measurement QTL GWAS699691 (human)) Homo sapiens

Symbol: GWAS699691_H
Name: alpha-hydroxybutyric acid measurement QTL GWAS699691 (human)
RGD ID: 407050715
Trait: alpha-hydroxybutyric acid measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381395,081,843 - 95,081,844RGD_MAPPER_PIPELINEGRCh38
GRCh371395,734,097 - 95,734,098RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS699691_HHumanalpha-hydroxybutyric acid measurement  IAGPrs11620327405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352399ABCC4ATP binding cassette subfamily C member 4 (PEL blood group)139501983595301451Human

Position Markers

Peak: (rs11620327)
Human AssemblyChrPosition (strand)Source
GRCh381395,081,843 - 95,081,844RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289426BW213_HBody weight QTL 213 (human)2.780.0002Body weightBMI1384267977110267977Human
407050715GWAS699691_Halpha-hydroxybutyric acid measurement QTL GWAS699691 (human)0.000002alpha-hydroxybutyric acid measurement139508184395081844Human
2289433BW340_HBody weight QTL 340 (human)3.11Body morphometrywaist circumference1384267977110267977Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS699691_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000002 5.699 rs11620327 0.40619656 alpha-hydroxybutyric acid measurement (EFO:0010458)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference