GWAS699458_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS699458_H (kynurenic acid measurement QTL GWAS699458 (human)) Homo sapiens

Symbol: GWAS699458_H
Name: kynurenic acid measurement QTL GWAS699458 (human)
RGD ID: 407050482
Trait: kynurenic acid measurement
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38813,020,509 - 13,020,510RGD_MAPPER_PIPELINEGRCh38
GRCh37812,878,018 - 12,878,019RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS699458_HHumankynurenic acid measurement  IAGPrs17786052405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602875TRMT9BtRNA methyltransferase 9B (putative)81294567313029777Human
151668675LOC124901889uncharacterized LOC12490188981298524313036996Human

Position Markers

Peak: (rs17786052)
Human AssemblyChrPosition (strand)Source
GRCh38813,020,509 - 13,020,510RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
407050482GWAS699458_Hkynurenic acid measurement QTL GWAS699458 (human)0.000007kynurenic acid measurement81302050913020510Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS699458_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000007 5.155 rs17786052 0.34287503 kynurenic acid measurement (EFO:0010506)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference