GWAS699457_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS699457_H (kynurenic acid measurement QTL GWAS699457 (human)) Homo sapiens

Symbol: GWAS699457_H
Name: kynurenic acid measurement QTL GWAS699457 (human)
RGD ID: 407050481
Trait: kynurenic acid measurement
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38711,625,568 - 11,625,569RGD_MAPPER_PIPELINEGRCh38
GRCh37711,665,195 - 11,665,196RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS699457_HHumankynurenic acid measurement  IAGPrs6955807405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602056THSD7Athrombospondin type 1 domain containing 7A71137036511832198Human

Position Markers

Peak: (rs6955807)
Human AssemblyChrPosition (strand)Source
GRCh38711,625,568 - 11,625,569RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407050481GWAS699457_Hkynurenic acid measurement QTL GWAS699457 (human)0.000007kynurenic acid measurement71162556811625569Human
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
1643247BW130_HBody Weight QTL 130 (human)1.280.008Body weightbody mass index7117453493Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS699457_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000007 5.155 rs6955807 0.98015755 kynurenic acid measurement (EFO:0010506)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference