GWAS699070_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS699070_H (adipic acid mesurement QTL GWAS699070 (human)) Homo sapiens

Symbol: GWAS699070_H
Name: adipic acid mesurement QTL GWAS699070 (human)
RGD ID: 407050094
Trait: adipic acid mesurement
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3896,866,466 - 6,866,467RGD_MAPPER_PIPELINEGRCh38
GRCh3796,866,466 - 6,866,467RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS699070_HHumanadipic acid measurement  IAGPrs10975861405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1316776KDM4Clysine demethylase 4C967208637175648Human

Position Markers

Peak: (rs10975861)
Human AssemblyChrPosition (strand)Source
GRCh3896,866,466 - 6,866,467RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643245BW137_HBody weight QTL 137 (human)2.28Body weight9528914931289149Human
2302773MAMTS18_HMammary tumor susceptibility QTL 18 (human)0.039Mammary tumor susceptibility9528914931289149Human
1357299AASTH47_HAllergic/atopic asthma related QTL 47 (human)0.00028Reversible airflow obstruction9528914931289149Human
2315898GLUCO191_HGlucose level QTL 191 (human)1.83Glucose level9528914931289149Human
2293400PRSTS224_HProstate tumor susceptibility QTL 224 (human)1.62Prostate tumor susceptibility9528914931289149Human
2293433PRSTS223_HProstate tumor susceptibility QTL 223 (human)1.6Prostate tumor susceptibility9528914931289149Human
407050094GWAS699070_Hadipic acid mesurement QTL GWAS699070 (human)0.000009adipic acid mesurement968664666866467Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS699070_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000009 5.046 rs10975861 0.21152282 adipic acid measurement (EFO:0010455)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference