GWAS698537_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: GWAS698537_H (suberic acid measurement QTL GWAS698537 (human)) Homo sapiens

Symbol: GWAS698537_H
Name: suberic acid measurement QTL GWAS698537 (human)
RGD ID: 407049561
Trait: suberic acid measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381756,068,030 - 56,068,031RGD_MAPPER_PIPELINEGRCh38
GRCh371754,145,391 - 54,145,392RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698537_HHumansuberic acid measurement  IAGPrs17819679405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604222ANKFN1ankyrin repeat and fibronectin type III domain containing 1175604607756517016Human

Position Markers

Peak: (rs17819679)
Human AssemblyChrPosition (strand)Source
GRCh381756,068,030 - 56,068,031RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407049561GWAS698537_Hsuberic acid measurement QTL GWAS698537 (human)0.000006suberic acid measurement175606803056068031Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698537_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000006 5.222 rs17819679 0.4846088 suberic acid measurement (EFO:0010534)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference