GWAS698536_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS698536_H (suberic acid measurement QTL GWAS698536 (human)) Homo sapiens

Symbol: GWAS698536_H
Name: suberic acid measurement QTL GWAS698536 (human)
RGD ID: 407049560
Trait: suberic acid measurement
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38818,785,247 - 18,785,248RGD_MAPPER_PIPELINEGRCh38
GRCh37818,642,757 - 18,642,758RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698536_HHumansuberic acid measurement  IAGPrs10100475405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603689PSD3pleckstrin and Sec7 domain containing 381852730319084805Human

Position Markers

Peak: (rs10100475)
Human AssemblyChrPosition (strand)Source
GRCh38818,785,247 - 18,785,248RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
407049560GWAS698536_Hsuberic acid measurement QTL GWAS698536 (human)0.000004suberic acid measurement81878524718785248Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698536_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000004 5.398 rs10100475 0.45262715 suberic acid measurement (EFO:0010534)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference