GWAS698533_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS698533_H (suberic acid measurement QTL GWAS698533 (human)) Homo sapiens

Symbol: GWAS698533_H
Name: suberic acid measurement QTL GWAS698533 (human)
RGD ID: 407049557
Trait: suberic acid measurement
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38531,971,963 - 31,971,964RGD_MAPPER_PIPELINEGRCh38
GRCh37531,972,069 - 31,972,070RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698533_HHumansuberic acid measurement  IAGPrs10940988405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735643PDZD2PDZ domain containing 253163913132110932Human

Position Markers

Peak: (rs10940988)
Human AssemblyChrPosition (strand)Source
GRCh38531,971,963 - 31,971,964RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407049557GWAS698533_Hsuberic acid measurement QTL GWAS698533 (human)0.000001suberic acid measurement53197196331971964Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698533_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000001 6 rs10940988 0.8979875 suberic acid measurement (EFO:0010534)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference