GWAS698230_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS698230_H (glycerol-3-phosphate measurement QTL GWAS698230 (human)) Homo sapiens

Symbol: GWAS698230_H
Name: glycerol-3-phosphate measurement QTL GWAS698230 (human)
RGD ID: 407049254
Trait: glycerol-3-phosphate measurement
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381858,230,488 - 58,230,489RGD_MAPPER_PIPELINEGRCh38
GRCh371855,897,720 - 55,897,721RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698230_HHumanglycerol-3-phosphate measurement  IAGPrs292445405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344203NEDD4LNEDD4 like E3 ubiquitin protein ligase185804422658401540Human

Position Markers

Peak: (rs292445)
Human AssemblyChrPosition (strand)Source
GRCh381858,230,488 - 58,230,489RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407049254GWAS698230_Hglycerol-3-phosphate measurement QTL GWAS698230 (human)0.000009glycerol-3-phosphate measurement185823048858230489Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698230_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000009 5.046 rs292445 0.18596984 glycerol-3-phosphate measurement (EFO:0010488)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference