GWAS697927_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS697927_H (systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS697927 (human)) Homo sapiens

Symbol: GWAS697927_H
Name: systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS697927 (human)
RGD ID: 407048951
Trait: systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384113,940,144 - 113,940,145RGD_MAPPER_PIPELINEGRCh38
GRCh374114,861,300 - 114,861,301RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606235ARSJarylsulfatase family member J4113900284113979647Human

Position Markers

Peak: (rs4460079)
Human AssemblyChrPosition (strand)Source
GRCh384113,940,144 - 113,940,145RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
407048951GWAS697927_Hsystolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS697927 (human)0.0000002systolic blood pressure, response to high sodium diet, response to dietary potassium supplementationsystolic blood pressure (CMO:0000004)4113940144113940145Human
407048635GWAS697611_Hmean arterial pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS697611 (human)0.000003mean arterial pressure, response to high sodium diet, response to dietary potassium supplementationmean arterial blood pressure (CMO:0000009)4113940144113940145Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS697611_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals C 0.21 0.000003 5.523 rs4460079 1.58 mean arterial pressure (EFO:0006340)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
GWAS697927_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals C 0.21 2E-7 6.699 rs4460079 2.33 systolic blood pressure (EFO:0006335)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
Database Acc Id Source(s)
GWAS Catalog GCST002252 GWAS Catalog

RGD Curation Notes
Note Type Note Reference