GWAS697176_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: GWAS697176_H (quinolinic acid measurement QTL GWAS697176 (human)) Homo sapiens

Symbol: GWAS697176_H
Name: quinolinic acid measurement QTL GWAS697176 (human)
RGD ID: 407048200
Trait: quinolinic acid measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38789,214,447 - 89,214,448RGD_MAPPER_PIPELINEGRCh38
GRCh37788,843,761 - 88,843,762RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS697176_HHumanquinolinic acid measurement  IAGPrs13438433405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1601814ZNF804Bzinc finger protein 804B78875970089338528Human

Position Markers

Peak: (rs13438433)
Human AssemblyChrPosition (strand)Source
GRCh38789,214,447 - 89,214,448RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407048200GWAS697176_Hquinolinic acid measurement QTL GWAS697176 (human)0.000005quinolinic acid measurement78921444789214448Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS697176_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000005 5.302 rs13438433 0.42513335 quinolinic acid measurement (EFO:0010528)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference