GWAS696853_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: GWAS696853_H (quinolinic acid measurement QTL GWAS696853 (human)) Homo sapiens

Symbol: GWAS696853_H
Name: quinolinic acid measurement QTL GWAS696853 (human)
RGD ID: 407047877
Trait: quinolinic acid measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382210,521,940 - 210,521,941RGD_MAPPER_PIPELINEGRCh38
GRCh372211,386,664 - 211,386,665RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS696853_HHumanquinolinic acid measurement  IAGPrs6752042405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
70833CPS1carbamoyl-phosphate synthase 12210477685210679107Human

Position Markers

Peak: (rs6752042)
Human AssemblyChrPosition (strand)Source
GRCh382210,521,940 - 210,521,941RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293458PRSTS291_HProstate tumor susceptibility QTL 291 (human)0.012Prostate tumor susceptibility2200715236226715236Human
1643053BW117_HBody Weight QTL 117 (human)2.40.00044Body weight2200715236226715236Human
407047877GWAS696853_Hquinolinic acid measurement QTL GWAS696853 (human)3e-08quinolinic acid measurement2210521940210521941Human
1643254BW125_HBody Weight QTL 125 (human)1.450.005Body weightbody mass index2200715236226715236Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS696853_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 3E-8 7.523 rs6752042 0.40611112 quinolinic acid measurement (EFO:0010528)
PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference