GWAS631266_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS631266_H (glycerol-3-phosphate measurement QTL GWAS631266 (human)) Homo sapiens

Symbol: GWAS631266_H
Name: glycerol-3-phosphate measurement QTL GWAS631266 (human)
RGD ID: 406982290
Trait: glycerol-3-phosphate measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38399,341,610 - 99,341,611RGD_MAPPER_PIPELINEGRCh38
GRCh37399,060,454 - 99,060,455RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS631266_HHumanglycerol-3-phosphate measurement  IAGPrs7652907405850206 GWAS_CATALOGPMID:23823483
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7652907)
Human AssemblyChrPosition (strand)Source
GRCh38399,341,610 - 99,341,611RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406982290GWAS631266_Hglycerol-3-phosphate measurement QTL GWAS631266 (human)0.000005glycerol-3-phosphate measurement39934161099341611Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS631266_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000005 5.302 rs7652907 0.2964438 glycerol-3-phosphate measurement (EFO:0010488)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference