GWAS631130_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS631130_H (systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS631130 (human)) Homo sapiens

Symbol: GWAS631130_H
Name: systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS631130 (human)
RGD ID: 406982154
Trait: systolic blood pressure, response to high sodium diet, response to dietary potassium supplementation
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38678,846,449 - 78,846,450RGD_MAPPER_PIPELINEGRCh38
GRCh37679,556,166 - 79,556,167RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs16890334)
Human AssemblyChrPosition (strand)Source
GRCh38678,846,449 - 78,846,450RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298452OSTEAR16_HOsteoarthritis QTL 16 (human)1.850.0016Joint/bone inflammationhip osteoarthritis65725907283259072Human
406983973GWAS632949_Hmean arterial pressure, response to high sodium diet QTL GWAS632949 (human)0.000002mean arterial pressure, response to high sodium dietmean arterial blood pressure (CMO:0000009)67884644978846450Human
406982154GWAS631130_Hsystolic blood pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS631130 (human)1e-10systolic blood pressure, response to high sodium diet, response to dietary potassium supplementationsystolic blood pressure (CMO:0000004)67884644978846450Human
406982152GWAS631128_Hmean arterial pressure, response to high sodium diet, response to dietary potassium supplementation QTL GWAS631128 (human)0.0000005mean arterial pressure, response to high sodium diet, response to dietary potassium supplementationmean arterial blood pressure (CMO:0000009)67884644978846450Human
406983928GWAS632904_Hsystolic blood pressure, response to high sodium diet QTL GWAS632904 (human)4e-09systolic blood pressure, response to high sodium dietsystolic blood pressure (CMO:0000004)67884644978846450Human
406981663GWAS630639_Hsystolic blood pressure, response to low sodium diet QTL GWAS630639 (human)0.0000002systolic blood pressure, response to low sodium dietsystolic blood pressure (CMO:0000004)67884644978846450Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS630639_H GCST002250 Blood pressure measurement (low sodium intervention) 1,850 Han Chinese ancestry individuals C 0.06 2E-7 6.699 rs16890334 4.32 systolic blood pressure (EFO:0006335)
response to low sodium diet (EFO:0005402)
 PMID:24165912
GWAS631128_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals C 0.06 5E-7 6.302 rs16890334 3.2 mean arterial pressure (EFO:0006340)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
GWAS631130_H GCST002252 Blood pressure measurement (high sodium and potassium intervention) 1,836 Han Chinese ancestry individuals C 0.06 1E-10 10 rs16890334 5.38 systolic blood pressure (EFO:0006335)
response to high sodium diet (EFO:0005401)
response to dietary potassium supplementation (EFO:0005403)
 PMID:24165912
GWAS632904_H GCST002249 Blood pressure measurement (high sodium intervention) 1,840 Han Chinese ancestry individuals C 0.06 4E-9 8.398 rs16890334 5.43 systolic blood pressure (EFO:0006335)
response to high sodium diet (EFO:0005401)
 PMID:24165912
GWAS632949_H GCST002249 Blood pressure measurement (high sodium intervention) 1,840 Han Chinese ancestry individuals C 0.06 0.000002 5.699 rs16890334 3.39 mean arterial pressure (EFO:0006340)
response to high sodium diet (EFO:0005401)
 PMID:24165912
Database Acc Id Source(s)
GWAS Catalog GCST002252 GWAS Catalog

RGD Curation Notes
Note Type Note Reference