GWAS600272_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS600272_H (bactericidal permeability-increasing protein measurement QTL GWAS600272 (human)) Homo sapiens

Symbol: GWAS600272_H
Name: bactericidal permeability-increasing protein measurement QTL GWAS600272 (human)
RGD ID: 406951296
Trait: neutrophil phagocytosis trait   (VT:0002467)    
LOD Score: Not Available
P Value: 5E-231
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382038,322,148 - 38,322,149RGD_MAPPER_PIPELINEGRCh38
GRCh372036,950,550 - 36,950,551RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS600272_HHumanneutrophil phagocytosis trait  IAGPrs6127742405850206Based on the EFO term IDGWAS_CATALOGPMID:34648354

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS600272_HHumanbactericidal permeability-increasing protein measurement  IAGPrs6127742405850206 GWAS_CATALOGPMID:34648354
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352137BPIbactericidal permeability increasing protein203830415638337505Human

Position Markers

Peak: (rs6127742)
Human AssemblyChrPosition (strand)Source
GRCh382038,322,148 - 38,322,149RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406951296GWAS600272_Hbactericidal permeability-increasing protein measurement QTL GWAS600272 (human)5e-231neutrophil phagocytosis trait (VT:0002467)203832214838322149Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407290891GWAS939867_Hbactericidal permeability-increasing protein measurement QTL GWAS939867 (human)5e-28neutrophil phagocytosis trait (VT:0002467)203832214838322149Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS600272_H GCST90246731 Bactericidal permeability-increasing protein levels 10,708 European ancestry individuals A 0.1 5E-231 230.302 rs6127742 0.686 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:34648354
GWAS939867_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.149404 5E-28 27.302 rs6127742 0.415376 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST90246731 GWAS Catalog

RGD Curation Notes
Note Type Note Reference